Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1910 ATGCCGCCTTTCCTTCATTTGCCTTGTTCCCCTCTCAAAAGGTTCACTTCACACACCTCAAAATCCTCCATAAACAATGCCCTGTTCAACCCACAACCCAATCTTCAACCATTTTTCTCATTTCTCCAAGAATTTCCCCAAAACATTTTGTCGGTCAAATCCATACACGCCCAGATTATTATCACAAACGCCATATCTGGGGACCAAATTTTGGTTGCAAAGCTTGTTCAGGCGTACTCAGGCTTGGGTTGTTTGGAAAATGCACGGAAAGTGTTTGATAAATTTCCTCAACCAAAAACTCTTCTTTGCAATGCCATGGTTAATGGGTATCTGCAAAATGAGCATTATAATGACAGTATCGAGCTGCTTAAGATGATGAGTCGATGTGATTTGGAATTTGATAGTTATACTTGTAATTTTGCTCTTAAGGCATGCATGTCCTTATTGGATTATGAAATGGGGATGGAAGTGATTAGATTAGCTGTGTGTAAGGGGTTGGCTAGAGGTCGGTTTTTGGGAAGTTCTATTTTGAATTTTTTGGTGAAAACTGGTGATATTATGAGTGCACAATTTTTTTTTCATCAAATGGTTGAGAAAGATGTTGTTTGTTGGAATGTGATGATTGGTGGGTTCATGCAAGAAGGCTTGTTTAGTGAAGGTTATAATGTGTTCCTTGATATGCTTTATAATAAAATTGAGCCCAGTGCTGTGACCATGACAATCTTGATTCAATCCTGTGGGGAGATGAGGAATTTAAAGTTTGGAAAATGTATACATAGCTATGTTCTTGGATTTGGAATGAGTAGTGATACAAGGGTGCTTACCTCATTGATTGATATGTATTGTAAATTGGGTGACGTCGAAAGTGCTCGATGGATTTTTGATACCATGCCCTTGAGGAACTTGGTCTCTTGGAATGTTATGATTTCGGGATATGTTCAAAATGGTTTTCTTGTTGAAACTTTATATCTCTTTCGGATGTTGGTTATGAATGATGGAGGTTTCGATTCAGGTACTGCTGTTAGCCTCATCCAGCTGTGTTCTCGCACGGCTGATTTGGATGGCGGCAAGATTCTTCATGGTTGCATCTACCGAAGGGGACTTGATTTGAATTTGGTTTTGTCTACTGCAATTGTTGACCTATATGCTAAATGTGGATCCCTGGCCTATGCATCTTCTGTTTTTGAAAGAATGAAAAATAAGAATGTGATTTCATGGACTGCCATGCTTGTGGGACTGGCACAGAATGGGCATGCTAGAGATGCCTTAAAGTTATTTTATCGGATGCAAAATGAGAGAGTTACTTTCAATGCCCTCACCTTAGTTAGTTTAGTCCAATGTTGCGCGCTCCTAGGCTTGTTACATGAAGGGAGATGTGTGCATGCTATCTTAACTCGATTTCATTTTGCTTCCGAAGTTGTCGTTATAACAGCCCTCATTGATATGTATGCAAAATGCAGCAAAATAAACTCAGCTGAGAAGGTATTCAAGTATGGTTTTACGCCTAAGGATGTGATATTATATAACGCTATGATTTCGGGCTATGGAATGCACGGTCTTGGGCGTAAAGCACTGTGCATCTACCATCAAATGAATCTAGAAGGACTTCAGCCAAACGAGAGTACCTTTGTTTCTCTGCTATCTGCTTGTAGCCATTCAGGCCTGGTGGAAGAGGGGATCTCTTTGTTTCAAAATATGGAGACAGATCATGACGTAACACCTACCCATAAACTTTACGCTTGTTTTGTAGATCTTCTATGTCGAGCAGGTCGCCTTCGGCAAGCTGAGGAATTAATCAATCAAATGCCTTTCATACCAACCAGTGGCATACTTGAAACTCTGCTGAATGGATGTCTTTTGCACAAGGACATTGAATTAGGTGTAAAATTTGCTGACAGATTACTCTCCTTGGAGTCTAGAAATCCAAGCATCTACATTACCTTGTCAAATATATATGCCGAAGCAAGTCGATGGGATTCCGTAAAGTATGTTCGAGATCTTCGCTCTTCCTATTGGCTCTTTCCACTTACTCGCAGACAGCCCAACAGAGCCCACAACAACCACGGCACTCAACTGCAAACAATCCACAATTATGATGATCCCAATTTCACTGTTCTGCTTTCCGGTCGATCGTTTTCTTTGATGGGGTTTTCATGTTTCTTTGTTCTTGTGAGAAAATCTATGAGTGAAGTGCTTCTCCGAGAGGCGTCTTCTAGAGGTGTAGAAGCCCCTGTAGATAAGGGGAAGAGGAATCAAATTACTGAGTCTCGTGTCCAAGGCGAGAGTGTTCAGGAGAAAGAAGTAGAACGTGTGAGTGCTAATGTAGAGGAGCATGTAAACGTGAACAAGGAAGAGGAGCAGAAGGCTGATGGGGTTCAGGAGCGCCCACGAGCAGAACGGAGAAAGTCGAGGAAGGTTCCGAGGCCAACTAACTTGCCAAACCATTCCCAGGGAGAGCAAGTTGCTGCTGGATGGCCTTCTTGGCTCACGGCAGTTTGTGGAGAGGCTCTCAATGGTTGGATTCCTCGGAAGGCTGATACATTTGAAAAGATTGATAAGATTGGACAAGGAACGTATAGCAATGTGTATAAAGCTAAAGATATACTTACAGGTAAAATTGTTGCACTGAAGAAGGTTCGGTTTGACAATTTGGAACCTGAAAGTGTGAAATTTATGGCTAGAGAGATTCTTATCCTTAGGAGATTAAATCATAACAATGTTGTGAAATTGGAGGGGTTGGTTACATCACGGATGTCTTGTAGTTTATACTTGGTGTTTGAGTACATGGAACATGATTTAGCAGGTCTTGCTGCAAATCCATCGATCAAATTTACGGAATCTCAGGTTAAATGTTTCATGCAACAACTGCTATCTGGACTGGAACACTGTCATAATCGACGGGTGCTTCACCGTGACATTAAAGGATCTAATCTTCTCATTGATAGTGGGGGAGTGCTTAAAATTGCCGACTTTGGATTGGCTTCTTTCTTTGATCCGAATCACAAGCACCCTATGACTAGTCGGGTGGTTACCTTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCAACTGATTATGGAGTAGGTGTAGACCTCTGGAGTGCTGGGTGTATACTGGCTGAGTTATTAGCTGGGAGGCCTATTATGCCTGGCCGTACAGAGGTGGAGCAACTACACAAGATATACAAGCTTTGTGGCTCCCCTTCAGATGAATATTGGAAAAGAGCAAAACTTCCAAATGCAACTTTATTTAAGCCCAGAGAACCTTATAAAAGATGTATAAAGGAGACATTTAAAGATTTCCCCCCATCTTCTCTGCCCCTTATAGAAACGCTTCTTGCAATTGATCCAGCAGAACGAAAGACAGCAACAGATGCATTAAATAGCGAGTTCTTCATGACAGAACCTTTAGCCTGCAAACCCTCCAACCTCCCGAAATATCCTCCCAGTAAGGAGATGGATGCTAGAAGACGGGATGATGAAGCTCGGAGACTAAGAGCAGCTAGTAAAGCCCAGGGAGATGGAGCGAAGAAAACACGCACACGTGTTAGGGCTATTCCAGCTCCCGAAGCCAATGCTGAAATACAAACAAATATTGACAGAAGGCGCTTAATTACACATGCAAATGCAAAGAGCAAAAGTGAAAAGTTTCCCCCACCACATCAGGATGGAGCGCTTGGCTTTACGCTAGGATATTCACGTCATATCGACCCATCTGGTGTTCCTCCCGACATACCGTTCAGCTCGACGCTGTTCACTTATTCTAAGGAACCAGTCCAAGCCTGGTCTGGTCCACTAGTCCCTGGTGCTGGCACTGAGGCTCCTAGGCAGAAGAAGCATGTAGGAGGTGTATCATCAAATCTTCCCACGGTTCATCCAAATTGTTGCGTTGACCTGATTTTTTCCCCCTCGAAAAAGGGGTCTCACCCATCATGA 3936 42.58 MPPFLHLPCSPLKRFTSHTSKSSINNALFNPQPNLQPFFSFLQEFPQNILSVKSIHAQIIITNAISGDQILVAKLVQAYSGLGCLENARKVFDKFPQPKTLLCNAMVNGYLQNEHYNDSIELLKMMSRCDLEFDSYTCNFALKACMSLLDYEMGMEVIRLAVCKGLARGRFLGSSILNFLVKTGDIMSAQFFFHQMVEKDVVCWNVMIGGFMQEGLFSEGYNVFLDMLYNKIEPSAVTMTILIQSCGEMRNLKFGKCIHSYVLGFGMSSDTRVLTSLIDMYCKLGDVESARWIFDTMPLRNLVSWNVMISGYVQNGFLVETLYLFRMLVMNDGGFDSGTAVSLIQLCSRTADLDGGKILHGCIYRRGLDLNLVLSTAIVDLYAKCGSLAYASSVFERMKNKNVISWTAMLVGLAQNGHARDALKLFYRMQNERVTFNALTLVSLVQCCALLGLLHEGRCVHAILTRFHFASEVVVITALIDMYAKCSKINSAEKVFKYGFTPKDVILYNAMISGYGMHGLGRKALCIYHQMNLEGLQPNESTFVSLLSACSHSGLVEEGISLFQNMETDHDVTPTHKLYACFVDLLCRAGRLRQAEELINQMPFIPTSGILETLLNGCLLHKDIELGVKFADRLLSLESRNPSIYITLSNIYAEASRWDSVKYVRDLRSSYWLFPLTRRQPNRAHNNHGTQLQTIHNYDDPNFTVLLSGRSFSLMGFSCFFVLVRKSMSEVLLREASSRGVEAPVDKGKRNQITESRVQGESVQEKEVERVSANVEEHVNVNKEEEQKADGVQERPRAERRKSRKVPRPTNLPNHSQGEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDILTGKIVALKKVRFDNLEPESVKFMAREILILRRLNHNNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTESQVKCFMQQLLSGLEHCHNRRVLHRDIKGSNLLIDSGGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIYKLCGSPSDEYWKRAKLPNATLFKPREPYKRCIKETFKDFPPSSLPLIETLLAIDPAERKTATDALNSEFFMTEPLACKPSNLPKYPPSKEMDARRRDDEARRLRAASKAQGDGAKKTRTRVRAIPAPEANAEIQTNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPSGVPPDIPFSSTLFTYSKEPVQAWSGPLVPGAGTEAPRQKKHVGGVSSNLPTVHPNCCVDLIFSPSKKGSHPS 1311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36136732 36155355 + CrPI670011_03g019100.1 Cre03g1910 493940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1910 1311 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 539 569 IPR002885 -
Cre03g1910 1311 ProSitePatterns Serine/Threonine protein kinases active-site signature. 968 980 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre03g1910 1311 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Cre03g1910 1311 Coils Coil 768 795 - -
Cre03g1910 1311 FunFam Pentatricopeptide repeat (PPR-like) superfamily protein 254 352 - -
Cre03g1910 1311 Gene3D Tetratricopeptide repeat domain 339 454 IPR011990 GO:0005515(InterPro)
Cre03g1910 1311 Gene3D Tetratricopeptide repeat domain 50 170 IPR011990 GO:0005515(InterPro)
Cre03g1910 1311 MobiDBLite consensus disorder prediction 739 820 - -
Cre03g1910 1311 Pfam PPR repeat family 503 551 IPR002885 -
Cre03g1910 1311 Pfam PPR repeat family 199 246 IPR002885 -
Cre03g1910 1311 MobiDBLite consensus disorder prediction 740 800 - -
Cre03g1910 1311 Pfam PPR repeat 376 403 IPR002885 -
Cre03g1910 1311 Pfam PPR repeat 581 602 IPR002885 -
Cre03g1910 1311 Pfam PPR repeat 303 329 IPR002885 -
Cre03g1910 1311 Pfam PPR repeat 477 497 IPR002885 -
Cre03g1910 1311 Pfam PPR repeat 103 130 IPR002885 -
Cre03g1910 1311 Pfam PPR repeat 404 433 IPR002885 -
Cre03g1910 1311 Pfam PPR repeat 275 300 IPR002885 -
Cre03g1910 1311 FunFam Pentatricopeptide repeat-containing protein mitochondrial 354 459 - -
Cre03g1910 1311 Gene3D Phosphorylase Kinase; domain 1 835 930 - -
Cre03g1910 1311 ProSiteProfiles Protein kinase domain profile. 848 1132 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g1910 1311 Gene3D Tetratricopeptide repeat domain 258 330 IPR011990 GO:0005515(InterPro)
Cre03g1910 1311 Gene3D Tetratricopeptide repeat domain 171 257 IPR011990 GO:0005515(InterPro)
Cre03g1910 1311 SMART serkin_6 848 1132 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g1910 1311 Gene3D Transferase(Phosphotransferase) domain 1 931 1171 - -
Cre03g1910 1311 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 218 326 IPR050421 -
Cre03g1910 1311 ProSitePatterns Protein kinases ATP-binding region signature. 854 877 IPR017441 GO:0005524(InterPro)
Cre03g1910 1311 Pfam Protein kinase domain 848 1132 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g1910 1311 FunFam probable serine/threonine-protein kinase At1g54610 931 1172 - -
Cre03g1910 1311 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Cre03g1910 1311 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Cre03g1910 1311 MobiDBLite consensus disorder prediction 1150 1181 - -
Cre03g1910 1311 MobiDBLite consensus disorder prediction 1142 1181 - -
Cre03g1910 1311 FunFam probable serine/threonine-protein kinase At1g54610 835 930 - -
Cre03g1910 1311 CDD STKc_CDK9_like 848 1132 - -
Cre03g1910 1311 SUPERFAMILY Protein kinase-like (PK-like) 843 1136 IPR011009 -
Cre03g1910 1311 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 474 671 - -
Cre03g1910 1311 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 504 538 IPR002885 -
Cre03g1910 1311 Gene3D Tetratricopeptide repeat domain 455 693 IPR011990 GO:0005515(InterPro)
Cre03g1910 1311 NCBIfam pentatricopeptide repeat 507 540 IPR002885 -
Cre03g1910 1311 NCBIfam pentatricopeptide repeat 404 435 IPR002885 -
Cre03g1910 1311 NCBIfam pentatricopeptide repeat 303 329 IPR002885 -
Cre03g1910 1311 NCBIfam pentatricopeptide repeat 202 235 IPR002885 -
Cre03g1910 1311 Pfam E motif 621 666 IPR046848 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0691 Cre-Chr3:5808259 Cre03g1910 Cre-Chr3:36136732 3.30E-191 dispersed
Cre03g1910 Cre-Chr3:36136732 Cre05g0708 Cre-Chr5:6258340 6.40E-230 dispersed
Cre11g2295 Cre-Chr11:34586839 Cre03g1910 Cre-Chr3:36136732 2.50E-47 dispersed
Cre02g1343 Cre-Chr2:19566404 Cre03g1910 Cre-Chr3:36136732 1.40E-07 transposed
Cre11g0723 Cre-Chr11:4363799 Cre03g1910 Cre-Chr3:36136732 3.00E-28 wgd
Cre02g1945 Cre-Chr2:32843622 Cre03g1910 Cre-Chr3:36136732 2.00E-241 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63999 PF00069 Pkinase 2.70E-67 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1910 K08819 - csv:101215893 1085.48