Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre03g1911 | ATGACACCCATTTTGAGTTATGTTGTGTCCAAATGGCAAGCGTTGTCCACTTCTGATCATGCCTCTGTTGTTTCCATTAACTTGTTTGTGGCACTTCTCTGTGCTTGTATTGTGATTGGTCATCTTCTTGAGGAGACCCGGTGGATGAACGAGTCCATCACTGCACTGTTGATTGGTCTGTTTACTGGAGTCATCATTTTACTGGTCAGTGGTGGGAAAAGTTCGCATCTATTGCTCTTTAGCGAAGACACATTCTTCATTTATCTTCTGCCACCGATTATATTCAACGCTGGGTTTCAGGTGAAAAAGAAGCAGTTCTTTGTTAACTTTATGACCATTATGCTGTTTGGTGCAATTGGTACATTAGTCTCTTGTTTTATCATCTCGTTAGGAGCTTTTCAGTTCTTTAAGAAAATGGATGTTGGATCATTGGATATTGCTGATGTTTTAGCAATTGGAGCTATATTTGCCGCAACAGATTCTGTATGCACATTGCAGATATTAAATCAGGATGAAACCCCTCTACTTTACAGTCTAGTATTTGGGGAAGGTGTAGTAAATGATGCCACATCTGTAGTGCTTTTCAATGCAATTCAGAGCTTAGATCTCAGTAATGTTGATGCAAGAGTTGCTTTACATTTTATTGGGAGCTTTTTTTATCTATTTTCAACAAGCACTTTACTCGGAGTATTTGTTGGCCTGCTGAGTGCTTATGTAATCAAAAAGTTATATTTTGGCAGGCACTCGACAGATCGTGAGGTTGCTCTTATGATACTCATGGCATATCTTTCATATATGCTGGCTGAATTATTAGATTTGAGTGGCATTCTCACAGTGTTCTTTTGTGGAATTGTAATGTCACATTATACCTGGCATAACGTGACTGAGAGCTCAAGAGTTACCACCAAGCATGCTTTTGCTACCTTATCCTTCATTTCTGAGACGTTTATCTTCGTTTATGTCGGCATGGATGCATTGGACATTGAGAAGTGGAGCTTTGTTAGTGATAGTCCGGGGACATCAGTTGCTGTGAGCGCAATATTATTAGGCCTGGTCATGGTTGGAAGAGCTGCCTTTGTTTTTCCATTATCATTTATATCAAATTTAGCTAAAAAATCGGCAGGCGAGAAAATAACCTTCAGGGAACAAGTTATCATTTGGTGGGCTGGTCTCATGAGAGGTGCTGTTTCTATTGCTCTAGCTTATCATCAGTTCACCCGAGCTGGGCACACTCAACTACGAGGGAATGCAATGATGATCACTAGTACCATAACTGTTGTCCTCTTCAGCACAATGGTGTTTGGATTATTGACCAAGCCTCTTATTAACTGTTTGCTACCTCAACTAAAACACACCACCAGCATGCTATCGGACCCTGCGACTCCAAAATCATTCTCGGTTCCACTACTTGGAAGCGCACAGGAGTCGGAGCTGGATCTTGACAGTCTCCACGTTCCTCGTCCAAGCAGTATACGTGCACTCCTTGCAACTCCTACGCACACCGTTCATCGCTACTGGCGAAAGTTCGATGATGCTGTCATGCGTCCAATGTTTGGGGGCCGGGGTTTTGTTCCCTTTGTTCCAGGATCCCCAACCGAAAGGGGTGGACACTGA | 1614 | 42.44 | MTPILSYVVSKWQALSTSDHASVVSINLFVALLCACIVIGHLLEETRWMNESITALLIGLFTGVIILLVSGGKSSHLLLFSEDTFFIYLLPPIIFNAGFQVKKKQFFVNFMTIMLFGAIGTLVSCFIISLGAFQFFKKMDVGSLDIADVLAIGAIFAATDSVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSLDLSNVDARVALHFIGSFFYLFSTSTLLGVFVGLLSAYVIKKLYFGRHSTDREVALMILMAYLSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFISETFIFVYVGMDALDIEKWSFVSDSPGTSVAVSAILLGLVMVGRAAFVFPLSFISNLAKKSAGEKITFREQVIIWWAGLMRGAVSIALAYHQFTRAGHTQLRGNAMMITSTITVVLFSTMVFGLLTKPLINCLLPQLKHTTSMLSDPATPKSFSVPLLGSAQESELDLDSLHVPRPSSIRALLATPTHTVHRYWRKFDDAVMRPMFGGRGFVPFVPGSPTERGGH | 537 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 36178578 | 36183454 | + | CrPI670011_03g019110.1 | Cre03g1911 | 493941 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre03g1911 | 537 | Gene3D | - | 145 | 197 | - | - | |
| Cre03g1911 | 537 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 17 | 527 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0090333(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
| Cre03g1911 | 537 | Pfam | Sodium/hydrogen exchanger family | 32 | 443 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| Cre03g1911 | 537 | NCBIfam | sodium/hydrogen exchanger 3 | 24 | 447 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cre03g1911 | 537 | PRINTS | Na+/H+ exchanger signature | 84 | 95 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cre03g1911 | 537 | PRINTS | Na+/H+ exchanger signature | 98 | 112 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cre03g1911 | 537 | PRINTS | Na+/H+ exchanger signature | 113 | 121 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cre03g1911 | 537 | PRINTS | Na+/H+ exchanger signature | 153 | 163 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre01g0381 | Cre-Chr1:3201816 | Cre03g1911 | Cre-Chr3:36178578 | 1.30E-168 | dispersed | |
| Cre01g1031 | Cre-Chr1:16993170 | Cre03g1911 | Cre-Chr3:36178578 | 4.00E-33 | dispersed | |
| Cre03g1911 | Cre-Chr3:36178578 | Cre09g0604 | Cre-Chr9:5694866 | 1.80E-194 | dispersed | |
| Cre03g1911 | Cre-Chr3:36178578 | Cre06g1300 | Cre-Chr6:6936222 | 9.30E-220 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre03g1911 | - | - | - | 0.0 |