Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1947 ATGGATGTTACCAACAATTCAAGAGCACCACCACCACCACCAAAAAACCACTTCCATAACCACAACAATTCCAAATTCCACCAACATTACCACAACCACAATGCAATTCTCAGCTCAAATTCCTTCCTCATTATCATTGCCTCAATCATCTCCATCACCATTCTCCTTGCCATCTTCTTCCTCATCTTCATGCTTCTCCGCCTCAAATCCGCTCGAAACACCGCCACTGCCGCCGCCTCCACCGCCGCACAATCCACCACATTCATCCCTCACACAACCATCAATTTTGACTCAAGCCCAGAAGTGAAGGGGGGTGGGTGCTTATATGGAGGCAATTCTGGGAGAATTCCTCAGTATAGAATCAGGGGAGTTCAAGTTTTCACTTATAAGGAACTGGAATTGGCTACTGACAATTTTAATGAAGCAAATGTGATTGGAAATGGAAGATTAGGGTTTGTGTACAGAGGAGTTCTTGCAGATGGAGCTGTGGTTGCCATTAAAATGCTTCACAGAGATGGCAAGCAGAGGGAACGTGCTTTCAGAATGGAGGTAGATCTCCTAAGCCGCTTGCACTCTCCTTGTTTGGTGGAGTTGCTTGGCTACTGTGCTGACCAACACCATAGGCTTCTGATATTTGAATTTATGCACAATGGTACTCTTCATCATCATCTACATAATCCCAACAGTGAATCTCGGCCATTGGATTGGAAAACTAGAATGAGGATAGCCCTTGATTGTGCCAAGGCACTTGAGTTCCTCCATGAGCATGCAGTTCCATCTGTTATTCATAGAAACTTCAAGTGCACCAATGTTCTACTGGATCAGGATTTCCGAGCCAAGGTGTCGGATTTTGGTTCGGCCAAGATGGGCTCTGACAAGATCAATGGTCAGATATCTACACAAGTCCTGGGAACCACAGGATATCTAGCACCAGAGTATGCTTCAACAGGAAAACTTACAACAAAGTCAGATGTGTACAGCTATGGTGTTGTGCTGCTTGAGCTATTGACCGGTCGAGTGCCGGTCGATATCAAACGGCCGCAGGGCGAGCATGTTCTTGTCTCATGGGCTCTCCCAAGGCTGACTAATAGAGAAAAAGTAGAGAAAATGATTGACCCAGCTATTCAAGGGAAGTACTCAAAAAAGGATCTAATTCAGGTAGCAGCCATTGCAGCCATGTGTGTGCAGCCTGAAGCCGACTACCGGCCTTTGATGACCGACGTTGTGCAGTCACTGGTTCCTCTAGTTAAGAACCCATCATCGTCGTCTCGATTCTTCAATTGA 1284 46.03 MDVTNNSRAPPPPPKNHFHNHNNSKFHQHYHNHNAILSSNSFLIIIASIISITILLAIFFLIFMLLRLKSARNTATAAASTAAQSTTFIPHTTINFDSSPEVKGGGCLYGGNSGRIPQYRIRGVQVFTYKELELATDNFNEANVIGNGRLGFVYRGVLADGAVVAIKMLHRDGKQRERAFRMEVDLLSRLHSPCLVELLGYCADQHHRLLIFEFMHNGTLHHHLHNPNSESRPLDWKTRMRIALDCAKALEFLHEHAVPSVIHRNFKCTNVLLDQDFRAKVSDFGSAKMGSDKINGQISTQVLGTTGYLAPEYASTGKLTTKSDVYSYGVVLLELLTGRVPVDIKRPQGEHVLVSWALPRLTNREKVEKMIDPAIQGKYSKKDLIQVAAIAAMCVQPEADYRPLMTDVVQSLVPLVKNPSSSSRFFN 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36529118 36532143 - CrPI670011_03g019470.1 Cre03g1947 493977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1947 427 FunFam Receptor-like serine/threonine-protein kinase ALE2 215 426 - -
Cre03g1947 427 Gene3D Phosphorylase Kinase; domain 1 112 214 - -
Cre03g1947 427 Gene3D Transferase(Phosphotransferase) domain 1 215 424 - -
Cre03g1947 427 MobiDBLite consensus disorder prediction 1 24 - -
Cre03g1947 427 ProSiteProfiles Protein kinase domain profile. 139 416 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g1947 427 Pfam Protein tyrosine and serine/threonine kinase 143 412 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre03g1947 427 PANTHER OS01G0750732 PROTEIN 9 417 IPR050885 -
Cre03g1947 427 SUPERFAMILY Protein kinase-like (PK-like) 117 412 IPR011009 -
Cre03g1947 427 CDD STKc_IRAK 145 415 - -
Cre03g1947 427 FunFam Somatic embryogenesis receptor kinase 1 112 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1947 Cre-Chr3:36529118 Cre07g0511 Cre-Chr7:2886403 7.70E-84 dispersed
Cre03g1942 Cre-Chr3:36452580 Cre03g1947 Cre-Chr3:36529118 4.50E-43 proximal
Cre07g0627 Cre-Chr7:4058882 Cre03g1947 Cre-Chr3:36529118 9.60E-113 transposed
Cre03g1947 Cre-Chr3:36529118 Cre05g0718 Cre-Chr5:6341480 1.40E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64003 PF07714 PK_Tyr_Ser-Thr 6.20E-44 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1947 - - - 0.0