Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1971 ATGTCCAAAATCTCAGGGGGTTCTGATGATGGTGGGAGCTTTGTGTCTGATGGTGAGAAATTAGAGAATCAATTTAGCCATGGAAGCTCTGAATCCCATCAACACCCTCAGCTTAAAGTTCCCAAGAAGAAAAGAAACTTGCCAGGAACACCAGATCCAGATGCGGATGTTGTCTCGTTATCTCCAGAAACTCTTATGGCAACCAATCGATTCGTGTGTGAAATATGCAACAAGGGATTTCAAAGAGACCAAAACTTGCAACTGCACAGACGAGGTCACAACCTACCATGGAAGTTGAAGCAAAGGACAAGCGGGAGCGAGACAAAGAGGAGGGTGTATGTGTGCCCAGAACCGTCGTGCGTGCACCACGACCCAGCGAGGGCGCTCGGAGACCTCACCGGAATCAAGAAGCATTTCAGTAGAAAGCATGGGGAGAAAAAGTGGAAATGTGAGAAATGCTCCAAAAGATATGCTGTTCAATCTGACTTGAAAGCTCATTCCAAAACCTGTGGCTCCAAGGAATACAAATGTGACTGTGGCACAATCTTTTCCAGAAGAGATAGCTTTATCACCCACAGAGCATTTTGTGATGCCTTAACAGAAGAAAACAACAAATTAGTATCTCATCAAGTAGCAACAACAATGGCTTCCACCGCCATTAATGCGCCTTCCTTTCAACCTCAACCACTTCAACATCTTCTTTCTCAAACCCCCGTCCTTTCGCCGCCATTAACGCTGCCCCACGACCTTATGCCTATTCCTCCAAAACCCTTAAATCTATCGGCTGGTTCCATGTTTTCATCTTCCATTTCTTCCGCCACCGATGGCCACCACTTTCCCTCCCCCTCTGCCCTCATGTCCGCCACCGCTCTGCTGCAGAAGGCGGCACAGATGGGAGCTGCCGTAAGTAGCCGTGGAAACTCCACTCCTTGTTTGAATTCGCCCATGGTCCATGAGAAGAAGGGTTTTGTTACAACCATGGCTCCTTCTTCTTTCTGTGGGATATTGGCTACCAACTGTTTGCAAAAATGTCAAGAAGAAAACATTTTGTCTCAACTACCTTCCAAGGGCAAAGCTGTGGAGATGGAGATGATCGACGACATTCCGATGCTGAATGGAGTGTTCGATGATCAGCCGGTCGTGGAGGCGGCGAGGAAGACGATGACATTAGATTTGTTGGGGGCTGAGGGAGGAAAAGGGATGAAATTTCAAGCACAAGAAAATGTGGGGTTTGGAGGGCTTGTGGAGAATATGACTTATTTTAGAAACCAAGGAGCCATGGGAAGGCAGATTTGGGAGATTTGA 1305 47.28 MSKISGGSDDGGSFVSDGEKLENQFSHGSSESHQHPQLKVPKKKRNLPGTPDPDADVVSLSPETLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSGSETKRRVYVCPEPSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKRYAVQSDLKAHSKTCGSKEYKCDCGTIFSRRDSFITHRAFCDALTEENNKLVSHQVATTMASTAINAPSFQPQPLQHLLSQTPVLSPPLTLPHDLMPIPPKPLNLSAGSMFSSSISSATDGHHFPSPSALMSATALLQKAAQMGAAVSSRGNSTPCLNSPMVHEKKGFVTTMAPSSFCGILATNCLQKCQEENILSQLPSKGKAVEMEMIDDIPMLNGVFDDQPVVEAARKTMTLDLLGAEGGKGMKFQAQENVGFGGLVENMTYFRNQGAMGRQIWEI 434
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 36732042 36739479 + CrPI670011_03g019710.1 Cre03g1971 494001
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1971 434 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Cre03g1971 434 MobiDBLite consensus disorder prediction 1 58 - -
Cre03g1971 434 MobiDBLite consensus disorder prediction 19 35 - -
Cre03g1971 434 FunFam protein indeterminate-domain 12-like 50 119 - -
Cre03g1971 434 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 29 402 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre03g1971 434 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Cre03g1971 434 Gene3D Classic Zinc Finger 127 210 - -
Cre03g1971 434 SMART c2h2final6 71 93 IPR013087 -
Cre03g1971 434 SMART c2h2final6 148 168 IPR013087 -
Cre03g1971 434 SMART c2h2final6 113 143 IPR013087 -
Cre03g1971 434 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 109 143 - -
Cre03g1971 434 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 176 IPR013087 -
Cre03g1971 434 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 174 211 - -
Cre03g1971 434 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 147 171 - -
Cre03g1971 434 SUPERFAMILY beta-beta-alpha zinc fingers 70 168 IPR036236 -
Cre03g1971 434 Pfam Zinc finger, C2H2 type 71 93 IPR013087 -
Cre03g1971 434 Gene3D Classic Zinc Finger 49 117 - -
Cre03g1971 434 FunFam protein indeterminate-domain 5, chloroplastic-like 126 205 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0571 Cre-Chr2:2777064 Cre03g1971 Cre-Chr3:36732042 4.20E-85 dispersed
Cre03g1971 Cre-Chr3:36732042 Cre09g0582 Cre-Chr9:5495427 3.10E-88 dispersed
Cre03g1971 Cre-Chr3:36732042 Cre04g0982 Cre-Chr4:28428145 3.80E-86 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53376 PF00096 zf-C2H2 0.0042 CL0361 Cre TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1971 - - - 0.0