Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1973 ATGGGTTGTGTTGTGAAGTGCGTTTTCATGATTGTTATCTTCATTTCGATGCCTTTTTCATCGCAGAACTCCCACATTTTGATTGCTAACTCATTGTTGAATACAGCAGAGAGCTTCAATGTTAAAGAGCTAGAGAGAGTTTCAGGGGAAGATGAGAGTGGAGGAAATGAACCTTTCATTCTGGAGAGAGTCAGAGCTCTACTTGGACTCAAGAGTTTACAATTGGGAAATCAAAGCCCATCAGATCTTTCACCTTTGCCGTCGCCATTGCCGTCTCCATCACCAGCCGCCACTGCTCCTTCTCCTGTTCCTATGGCAGCTCATCGAGTGCACATTCATGAACATTCCCACCCTCATCAACTCCGCTTGCACAAGAGCCGACCAGTATACAAACCTAAAAGAAAAGAAGATCCAAAAGAAGGAAGAGTCAGAAAAATTCTTGTCGCAGTTCTTGTGTCTGCAGGAGTCACCATTTTGATATGCTCTATTATTGCCTTTTGGGTCTGCAAGAAGTTCAAAGTTCAGAGAGAGGAATCCATGGAGAAGCATTCTGTTAAGAGTGAAAGAGAAGAGAAGACAGCAAGACCAAAATCTGGCCTTGATCTGTTCGATCTCGGTATGCTTGGAATGGATGTAGAAGAACAGACCCATACTTCTGTAAGTGAAAAGGAGTTATCTGTTCATAAAGAGGGGGAAAGGGACCAAGAGACGTTGGATTCAGAATCTGATAATGTAAGTGTTTCTTCAATCAAGGAAATGATGTATGTTCATGAGGAAGATGATAGTAAATCAATACAATGCGTATCTGATGGAACTCATTCCTCACCTGGGGATAGAGTTACTCCTGTTAAATGTTGTTCGTCTGATGATGAGGAATCATTCCATTCTTGTGGTGACTCCAATTTGTCGAATGCTCGCCTTTCAAATGCTTCCGGATCTTCTTCTGCGAATGTGATAACAAATTCTACTTGTTCTGTGCCAACTGTGAACTTATCAAGTAAATTGGAAATACAATGTGATGAATCTAACAAACTATTAACTTCTGACCATTCGCATCTTACCCTTTCTCCTTGTAGTTCAGAACCCAAAATGCAGATGGTTTCCCATTCAGTAGGTTGCCAAAAGAATGTCCTATCTTTATCTCCACCTCCTCCACCGCCACCACCACCGCCTCCGCCAGTCACTGATCGCAGTTCATTTTCCTTCTCTTCACCCTTTTCAACTGGATCTACTTCCTCTTCTGCATTGTTAAGATCCTCATCTCCTGCAATGTCAGATTCTTCTTCGTTATCTCAAATACCATGGAATGATTTGCCATCACCTCAAACTGCTACTAAACCTTCACTACCATCATCTGCTATTCCTCCACCCCCTTCTCCACCTCCAAGTTTGAAAACAAACGCTTACTCTTTCAAAACTCCACCTCCTCCTCCTTCCAAGCTCCCTCAATTCATGGCATTTGGAAAAGAGGGAAATTTGCGGCCAAAACTTAAGCCTCTCCACTGGGACAAAGTAAGAGCTACACCAGATCAATCAATGGTGTGGGACAAGCTAAGATGGAGCTCATTTGAGCTAGATGAAGAAATGATTGAGTCACTATTTGGCTACAACCAACATGATTCAATGAAGAATGGTGATGCTAGCAACAAAAGCCCTTCTCCAAGCAAACATATACTAGAGGCAAAAAGACTTCAGAACCTAACCATTCTCTTAAAAGCCCTGAATCTCTCTACAGAACAAGTTTGTGAAGCCATAGAACAAGGTAGCGGGTTGCGTTTGAGACAACTTGAAGCACTGGTTAAGATGGTACCAACTCAAGAAGAAGAAGCCAAATTGTTAAGCTATGAAGGAGACATCGGTGAATTAGGTTGTACAGAGAAGTTTGTCATAGCAATTCTGAGAATACCATTCGCCTTCCAAAGAATAGAAGCCATGCTTTACAGAGAAACTTTTGAAGATGAAGTGAACCATCTACGGAATTCATTTTCCATACTAGAGGAAGCCTGCAAGGAACTAAGATCCAGCAGACTCTTCCTGAAACTACTAGAAGCCGTGCTAAAAACAGGGAATCGAATGAACGTCGGAACAAGCAGAGGAGGCGCTAGAGCATTTAAACTAGACGCCCTCCTAAAACTCTCCGACGTCAAAGGAACCGACGGCAAAACATCTCTACTCCACTTCGTGGTACAAGAAATAATCCGGTCTGAAGGAATCAGAGTATCGGGTAGCATAATGGGAAAAATCAACCAAAAAAACAAATCAAGAACCATGGAAGAAAGAGAAAACGATTACCGAAGAATGGGGTTAGATCTGGTATCGGGGTTGAGCACGGAACTGCAGAACGTGAAGCGAGCGGCGACGATCGATCTAAAAGTAGTTGGAAGCTCGAGGGGAAATCTGAATGAGGGAATGGGGAAAATGGAGAAACTGGTGGGGAAGGAGTTGAGTGTGGATGAAAGGAGTGGGAATTTCGTGGAAGCCATGAAAGGGTTTGTGGGCTATGTGAAGAAGAGGATGGAGGAAGTGAGGAAGGATGAAGAAAGGGTAATGTCGAGTGTGAGAGAGATTACAGAGTACTTCCATGGAAATGTGAGCAAAGAAGAGACGAATCCGTTGAGGATTTTTGTGATTGTGAGAGATTTTCTTGGAATGTTGGACAATGTCTGTAAGAGCTTCAAGATTGGAAGTTGA 2691 42.88 MGCVVKCVFMIVIFISMPFSSQNSHILIANSLLNTAESFNVKELERVSGEDESGGNEPFILERVRALLGLKSLQLGNQSPSDLSPLPSPLPSPSPAATAPSPVPMAAHRVHIHEHSHPHQLRLHKSRPVYKPKRKEDPKEGRVRKILVAVLVSAGVTILICSIIAFWVCKKFKVQREESMEKHSVKSEREEKTARPKSGLDLFDLGMLGMDVEEQTHTSVSEKELSVHKEGERDQETLDSESDNVSVSSIKEMMYVHEEDDSKSIQCVSDGTHSSPGDRVTPVKCCSSDDEESFHSCGDSNLSNARLSNASGSSSANVITNSTCSVPTVNLSSKLEIQCDESNKLLTSDHSHLTLSPCSSEPKMQMVSHSVGCQKNVLSLSPPPPPPPPPPPPVTDRSSFSFSSPFSTGSTSSSALLRSSSPAMSDSSSLSQIPWNDLPSPQTATKPSLPSSAIPPPPSPPPSLKTNAYSFKTPPPPPSKLPQFMAFGKEGNLRPKLKPLHWDKVRATPDQSMVWDKLRWSSFELDEEMIESLFGYNQHDSMKNGDASNKSPSPSKHILEAKRLQNLTILLKALNLSTEQVCEAIEQGSGLRLRQLEALVKMVPTQEEEAKLLSYEGDIGELGCTEKFVIAILRIPFAFQRIEAMLYRETFEDEVNHLRNSFSILEEACKELRSSRLFLKLLEAVLKTGNRMNVGTSRGGARAFKLDALLKLSDVKGTDGKTSLLHFVVQEIIRSEGIRVSGSIMGKINQKNKSRTMEERENDYRRMGLDLVSGLSTELQNVKRAATIDLKVVGSSRGNLNEGMGKMEKLVGKELSVDERSGNFVEAMKGFVGYVKKRMEEVRKDEERVMSSVREITEYFHGNVSKEETNPLRIFVIVRDFLGMLDNVCKSFKIGS 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36749257 36752344 - CrPI670011_03g019730.1 Cre03g1973 494003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1973 896 ProSiteProfiles Formin homology-2 (FH2) domain profile. 487 896 IPR015425 -
Cre03g1973 896 Coils Coil 648 668 - -
Cre03g1973 896 MobiDBLite consensus disorder prediction 375 482 - -
Cre03g1973 896 SMART it6_source 487 894 IPR015425 -
Cre03g1973 896 MobiDBLite consensus disorder prediction 216 244 - -
Cre03g1973 896 MobiDBLite consensus disorder prediction 79 138 - -
Cre03g1973 896 SUPERFAMILY Formin homology 2 domain (FH2 domain) 500 890 - -
Cre03g1973 896 Gene3D Formin, FH2 domain 486 893 IPR042201 -
Cre03g1973 896 MobiDBLite consensus disorder prediction 397 449 - -
Cre03g1973 896 MobiDBLite consensus disorder prediction 84 100 - -
Cre03g1973 896 MobiDBLite consensus disorder prediction 112 129 - -
Cre03g1973 896 MobiDBLite consensus disorder prediction 216 240 - -
Cre03g1973 896 Pfam Formin Homology 2 Domain 492 885 IPR015425 -
Cre03g1973 896 PANTHER FORMIN-RELATED 62 892 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Cre03g1973 896 MobiDBLite consensus disorder prediction 379 396 - -
Cre03g1973 896 MobiDBLite consensus disorder prediction 450 464 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1973 K28090 - - csv:101208374 1410.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1973 Cre-Chr3:36749257 Cre11g0591 Cre-Chr11:3007334 8.80E-106 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g193 . . . . . . . . Cmo10g01196 Cmo11g01174 . . . . Sed04g0465 . . Bhi02g02104 Tan09g0197 Cmetu02g0328 . Hepe09g1587 . . . . . . . . . . . Cone5ag0041 . Lsi06g00120 . Chy08g01021 . . . . . Bpe05g00226 . . Bma05g00280 . . . Cma10g01113 Cma11g01134 Car10g00964 Car11g00952 Cpe04g00158 . . . . . . . . Cla03g01635 Cam03g1721 Cec03g1767 Cco03g1771 Clacu03g1743 Cmu03g2293 Cre03g1973 . Csa01g02771 . Cme02g00090
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre07g0601 . 181 1055 FH2 protein (formin) Gene Family AT3G25500 51.8 1.6e-191 667.2
Cre11g0591 . 454 930 FH2 protein (formin) Gene Family AT3G25500 66.7 3.1e-166 583.2
Cre02g1531 . 438 894 FH2 protein (formin) Gene Family AT3G25500 60.1 9.0e-142 501.9
Cre03g1973 . 494 891 FH2 protein (formin) Gene Family AT3G25500 51.7 3.3e-104 377.1
Cre07g0601 . 618 1072 FH2 protein (formin) Gene Family AT2G43800 60.3 5.9e-142 502.3
Cre02g1531 . 472 910 FH2 protein (formin) Gene Family AT2G43800 55.1 1.0e-125 448.4
Cre02g1167 . 279 591 FH2 protein (formin) Gene Family AT4G15200 51.9 2.1e-50 197.2
Cre05g1650 . 553 699 FH2 protein (formin) Gene Family AT4G15200 66.7 4.8e-47 186.0
Cre05g1650 . 554 990 FH2 protein (formin) Gene Family AT5G54650 69.2 2.1e-168 590.1
Cre02g1167 . 452 908 FH2 protein (formin) Gene Family AT5G54650 63.2 4.5e-158 555.8
Cre07g0601 . 629 1030 FH2 protein (formin) Gene Family AT5G54650 50.8 3.2e-103 373.6
Cre02g1531 . 31 913 FH2 protein (formin) Gene Family AT5G67470 58.1 6.3e-237 817.8
Cre07g0601 . 610 1072 FH2 protein (formin) Gene Family AT5G67470 58.9 1.1e-135 481.5
Cre11g0591 . 467 912 FH2 protein (formin) Gene Family AT5G67470 60.6 9.4e-132 468.4
Cre03g1973 . 494 893 FH2 protein (formin) Gene Family AT5G67470 50.9 1.7e-104 377.9
Cre05g2663 . 349 832 FH2 protein (formin) Gene Family AT1G59910 51.6 1.0e-125 448.4
Cre07g0601 . 650 1031 FH2 protein (formin) Gene Family AT5G48360 52.6 4.4e-101 366.3
Cre02g1531 . 496 871 FH2 protein (formin) Gene Family AT5G48360 50.5 1.7e-89 327.8
Cre02g1531 . 476 870 FH2 protein (formin) Gene Family AT3G05470 52.0 3.9e-106 383.3
Cre05g1650 . 559 973 FH2 protein (formin) Gene Family AT3G05470 50.5 6.7e-106 382.5
Cre07g0594 . 974 1285 FH2 protein (formin) Gene Family AT1G42980 51.1 2.2e-69 259.6
Cre07g0594 . 1 1292 FH2 protein (formin) Gene Family AT1G31810 67.2 0.0e+00 1225.7
Cre06g2459 . 1393 1714 FH2 protein (formin) Gene Family AT5G07650 74.8 1.7e-129 460.7
Cre01g1538 . 980 1290 FH2 protein (formin) Gene Family AT5G07650 70.1 2.8e-119 426.8
Cre05g1800 . 1086 1408 FH2 protein (formin) Gene Family AT5G07650 64.7 1.2e-109 394.8
Cre06g2103 . 936 1255 FH2 protein (formin) Gene Family AT5G07650 62.6 3.4e-109 393.3
Cre07g0594 . 958 1289 FH2 protein (formin) Gene Family AT5G07650 59.6 4.9e-108 389.4
Cre06g2459 . 1320 1707 FH2 protein (formin) Gene Family AT5G07770 69.2 1.6e-140 496.9
Cre01g1538 . 903 1290 FH2 protein (formin) Gene Family AT5G07770 63.0 7.0e-128 454.9
Cre05g1800 . 1010 1400 FH2 protein (formin) Gene Family AT5G07770 59.2 3.0e-118 422.9
Cre06g2103 . 859 1247 FH2 protein (formin) Gene Family AT5G07770 57.3 4.7e-116 415.6
Cre07g0594 . 894 1283 FH2 protein (formin) Gene Family AT5G07770 55.2 4.0e-115 412.5
Cre05g1800 . 1002 1408 FH2 protein (formin) Gene Family AT3G32400 76.4 2.2e-170 595.9
Cre06g2103 . 866 1256 FH2 protein (formin) Gene Family AT3G32400 69.2 3.0e-148 522.3
Cre06g2459 . 1320 1714 FH2 protein (formin) Gene Family AT3G32400 65.2 9.4e-142 500.7
Cre07g0594 . 894 1288 FH2 protein (formin) Gene Family AT3G32400 65.5 1.4e-140 496.9
Cre01g1538 . 873 1293 FH2 protein (formin) Gene Family AT3G32400 57.8 2.0e-131 466.5
Cre05g1800 . 1 1408 FH2 protein (formin) Gene Family AT2G25050 51.1 0.0e+00 1154.0
Cre06g2103 . 1 1256 FH2 protein (formin) Gene Family AT2G25050 54.3 9.5e-294 1006.9
Cre06g2459 . 1321 1714 FH2 protein (formin) Gene Family AT5G07780 63.0 1.9e-123 439.9
Cre01g1538 . 904 1293 FH2 protein (formin) Gene Family AT5G07780 57.9 5.1e-113 405.2
Cre05g1800 . 1011 1401 FH2 protein (formin) Gene Family AT5G07780 54.0 8.1e-103 371.3
Cre07g0594 . 895 1284 FH2 protein (formin) Gene Family AT5G07780 52.0 1.2e-101 367.5
Cre06g2103 . 866 1255 FH2 protein (formin) Gene Family AT5G07780 53.8 2.0e-101 366.7
Cre06g2459 . 1 1723 FH2 protein (formin) Gene Family AT5G07740 60.9 0.0e+00 1122.5
Cre06g2459 . 1392 1721 FH2 protein (formin) Gene Family AT5G07760 74.4 3.6e-128 456.4
Cre01g1538 . 979 1293 FH2 protein (formin) Gene Family AT5G07760 69.3 6.3e-117 419.1
Cre06g2103 . 935 1255 FH2 protein (formin) Gene Family AT5G07760 64.7 7.5e-110 395.6
Cre05g1800 . 1085 1417 FH2 protein (formin) Gene Family AT5G07760 63.7 3.7e-109 393.3
Cre07g0594 . 968 1295 FH2 protein (formin) Gene Family AT5G07760 59.3 4.2e-105 379.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006698 1 1 1 1 1 1 2 2 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37