Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1984 ATGTTAAGAGTTTCTTTAGCCATTCATCTTTTTACGTTGATCTTTATTCCCGCATTACAAGTTTCCTGCATTGATGTTATCTACCCGAATGAGCAGAATAATGTTAGACAATCCATGATTTCTCAGATTTGTGCAGATATCGAAGACCGAAATTCATGCATTTCGAACATACAACTTGAGATGGGAAGAAGTGTGAACTCAAGTCCAAGTTCTGTCTTGAGTGCTGCAATTAGAGCAACTCTTAATGAAGCTAGACGAGCCATAGAGTCTATAACAAAGTTCAGCACATTCTCGTTTAGCTACCGTGAAGAAATGGCAATCGAGGACTGCAAGGAGCTTCTTGATTTCTCTGTGTCAGAGCTTGCCTGGTCATTAGCTGAGATGAAAAGGATTCGTGCAGGCAAAAACGAAGCTCCCGACGAAGGGAATCTAAAAGCATGGCTGAGCGCTGCTCTCAGCAACCAAGACACATGCCTTGAAGGCTTTGAAGGCACAGACAGGCATATTGTAGGTTTCATTAGAGGTAGTTTGAAGCAAGTTACACTGCTCATTAGCAATGTCCTGGCATTGTACACTCAATTACACAGCTTACCATTTCAACCCCCGCGGAATGAAACAATAGAGAAAACCAAAAATTCGGAGTTTCCAGATTGGATGATGGATAGCGAGCACAAGCTCGTGAAATCTCATCCACGTAACGTCCATGTTGATGCAGTCGTGGCTTTGGATGGAAGCGGAGATTTCCGTTCTATCACAGAAGCTGTAAATGAAACTCCAAATTATAGCAATAGAAGGTACATCATATATGTGAAGAAGGGAGTCTACAAAGAAAATATCGACATGAAGCGGAAGAAAACCAACATAATGTTTATTGGAGACGGTATTGGAGAAACAATAGTGACGGGAAATCGCAATTTTCTGCAGGGATGGACTACTTTCAGAACTGCAACTGTTGCTGTCTCTGGGAAGGGATTCATAGCAAGAGACATGACATTTCGCAACACGGCTGGACCAGAAAACCATCAAGCAGTGGCACTCCGAGTTGACTCTGATCAATCAGCCTTCTTTCGGTGCAGCTTCGAAGGCCATCAAGACACGCTCTACGTCCACTCCCTACGCCAATTTTACAGGGAATGCAACATATATGGCACCATAGACTACATCTTTGGCAACGGGGCAGCAGTATTCCAAAAATGCAACATCTACACTAGAGTTCCGCTCCCACTCCAGAAGGTCACGATCACGGCACAAGGTCGAAAGTCCCCGCACCAGAGTACGGGGTTTTCAATCCAAGACAGCTTTATTTATGCAACTCAGCCAACGTATCTTGGAAGACCATGGAAGTTATATTCAAGGACTGTCTTCTTGAACACTTACATGAGTGGTTTGGTACAACCTAGAGGATGGCTTGAGTGGTATGGCAATTTTGCTTTAGGCACATTGTGGTATGGAGAATATAAAAACTATGGACCTGGTGCATCCCTTTCGGGTCGGGTCAAATGGCCTGGGTACCACGATATCCGTGACCCTGCCATGGCTAGGTTCTTCACCTCCGAGCACTTCATCGACGGTCGATCATGGTTGCCAAAGACGGGTATAAAGTTCACATTGGGATTGAGTAATTAA 1626 44.28 MLRVSLAIHLFTLIFIPALQVSCIDVIYPNEQNNVRQSMISQICADIEDRNSCISNIQLEMGRSVNSSPSSVLSAAIRATLNEARRAIESITKFSTFSFSYREEMAIEDCKELLDFSVSELAWSLAEMKRIRAGKNEAPDEGNLKAWLSAALSNQDTCLEGFEGTDRHIVGFIRGSLKQVTLLISNVLALYTQLHSLPFQPPRNETIEKTKNSEFPDWMMDSEHKLVKSHPRNVHVDAVVALDGSGDFRSITEAVNETPNYSNRRYIIYVKKGVYKENIDMKRKKTNIMFIGDGIGETIVTGNRNFLQGWTTFRTATVAVSGKGFIARDMTFRNTAGPENHQAVALRVDSDQSAFFRCSFEGHQDTLYVHSLRQFYRECNIYGTIDYIFGNGAAVFQKCNIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSFIYATQPTYLGRPWKLYSRTVFLNTYMSGLVQPRGWLEWYGNFALGTLWYGEYKNYGPGASLSGRVKWPGYHDIRDPAMARFFTSEHFIDGRSWLPKTGIKFTLGLSN 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36849676 36851437 + CrPI670011_03g019840.1 Cre03g1984 494014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1984 541 CDD PMEI-like_3 43 196 - -
Cre03g1984 541 Pfam Pectinesterase 237 524 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cre03g1984 541 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 195 IPR035513 -
Cre03g1984 541 Gene3D - 231 539 IPR012334 -
Cre03g1984 541 ProSitePatterns Pectinesterase signature 2. 381 390 IPR033131 -
Cre03g1984 541 PANTHER PECTINESTERASE 10 530 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cre03g1984 541 SMART PMEI_2 35 190 IPR006501 GO:0004857(InterPro)
Cre03g1984 541 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 195 IPR035513 -
Cre03g1984 541 ProSitePatterns Pectinesterase signature 1. 262 281 IPR018040 -
Cre03g1984 541 SUPERFAMILY Pectin lyase-like 236 538 IPR011050 -
Cre03g1984 541 NCBIfam pectinesterase inhibitor domain 7 195 IPR006501 GO:0004857(InterPro)
Cre03g1984 541 FunFam Pectinesterase 231 539 - -
Cre03g1984 541 Pfam Plant invertase/pectin methylesterase inhibitor 39 190 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1984 Cre-Chr3:36849676 Cre10g0267 Cre-Chr10:1566735 1.10E-132 dispersed
Cre03g1984 Cre-Chr3:36849676 Cre03g1985 Cre-Chr3:36853599 3.20E-103 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1984 K01051 - csv:101202977 1054.66