Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1985 ATGGGTTATAGAGATGATGATTCTCAGAACAAGAAAAGATACGCCATCATCGGTGTCTCGTCCATGTTACTAGTGGCGATGGTGGTGGCGGTGACGGTTGGCGTTAACCTAAACCAAGACGAAACGAGCGAACCGGCTACAGGAAACAAAGCCCATGAAATATCTGCTTCAGTGAAAGCCATTAAAGCCATTTGTCAACCTACTGATTATAAACAAGAATGTGTTGCTAGTCTCAAGGCTGCTGGCAACAACTCTTCAGACCCAAAGGAATTGGTTCAAGCTGGCTTCAAGGCTGCCATGAAGTTGATCCAAGCTGCTGCTAATAAATCTGTCACCTTGAAAGAGCTTGAGAAAGACCCTAGAACCTCCAAGGCCCTTGCTGGTTGTAAAGAGCTAATGGATTTTGCTGTTGACGAGCTTAAATACTCGATGAACAAGCTCGGCGAGTTTGATATTAGTAAACTCGATGAGATGTTGATCGATATTAAGATCTGGCTCAGTGCTACCATTACTTATCAGGAAACTTGCTTGGATGGGTTCGAGAACACAACCGGAAATGCGGCAGAGAAGATGAAGAAGGCATTGAAGACATCAATGCGGTTGAGCAGCAATGGGTTGGCCATGGTGTCGCAAATTTCGTCCATGTTGACAGAGTTGCAGATTCCAGGGATCAGCCGAAGGCGACTTCTCGAGATTCCGGTTCTTGGGCACGACGATTACCCCGACTGGGCGAACCCCGGGATGCGACGACTCCTAGCTGCCGGGACGAAAGTGAAGCCAAACGTTGTGGTGGCCAAGGATGGAAGTGGTCAGTTCAGGACCATTCAAGAGGCTCTTGACAAAGTTCCAAAGAGGAAGAACAATGCAACCTTTGTGATTCATATCAAGGCAGGAGTGTACAAGGAATATCTCATCATCAAAAAATCTCTCACCCATTTGATGCTCATTGGTGATGGCCCCAAAAAGACCATTATCACTGGAAGTAAAAACTTCATTGATGGCACACCCACCTTCAAAACTGCAACGGTTGCTGTGACAGCAGAACACTTCATGGCAAGAGATATCGGGTTCGAAAACACGGCAGGGCCACATAAGCACCAAGCAGTTGCACTACGGGTCCAAGCCGACAAAGCCGTATTCTACAACTGCGAAATGCATGGCTACCAAGACACTCTCTATGTCCACACCATGCGTCAGTTCTACCGCGATTGCACCATCTCCGGCACCATCGACTTCATCTTCGGTGATGCAGCTGCCATCTTCCAAAGTTGCACCTTCCTAGTCCGCAAGCCCCTTCCAAACCAACAATGCATCGTAACGGCACACGGACGCAAAGAACGCCGCCAACCATCCGCCCTCATCATCCAAAACTGTTCGTTCAAGGCCGACACCGACCTCGCCCCAGTACAAAAACAGTTCCGATCCTTCCTTGGGCGACCATGGAAGGAATATTCGAGAACAATCATCATGGAATCATACATTGGTGATTTGATTCAACCAGAAGGGTGGTTGCCATGGGCTGGAGACTGGGGTTTGAAGACATGTTTTTACACCGAGTTCAACAATTATGGGCCAGGATCTGATAAGTCAAAGAGGGTGAAATGGAGAGGGATTAAGACCATTACGCCACAACATGCTTTGGATTTTACTGCCGGAAGGTTTGTTATGGGGGATAGATGGATTAAGCCCACCGGAGTTCCATATGTCTCCGGCATGACCAGGACCGGCGGCGCGGCTGCAACAGGCGGAGCTGCTCATTGA 1761 48.5 MGYRDDDSQNKKRYAIIGVSSMLLVAMVVAVTVGVNLNQDETSEPATGNKAHEISASVKAIKAICQPTDYKQECVASLKAAGNNSSDPKELVQAGFKAAMKLIQAAANKSVTLKELEKDPRTSKALAGCKELMDFAVDELKYSMNKLGEFDISKLDEMLIDIKIWLSATITYQETCLDGFENTTGNAAEKMKKALKTSMRLSSNGLAMVSQISSMLTELQIPGISRRRLLEIPVLGHDDYPDWANPGMRRLLAAGTKVKPNVVVAKDGSGQFRTIQEALDKVPKRKNNATFVIHIKAGVYKEYLIIKKSLTHLMLIGDGPKKTIITGSKNFIDGTPTFKTATVAVTAEHFMARDIGFENTAGPHKHQAVALRVQADKAVFYNCEMHGYQDTLYVHTMRQFYRDCTISGTIDFIFGDAAAIFQSCTFLVRKPLPNQQCIVTAHGRKERRQPSALIIQNCSFKADTDLAPVQKQFRSFLGRPWKEYSRTIIMESYIGDLIQPEGWLPWAGDWGLKTCFYTEFNNYGPGSDKSKRVKWRGIKTITPQHALDFTAGRFVMGDRWIKPTGVPYVSGMTRTGGAAATGGAAH 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36853599 36855537 + CrPI670011_03g019850.1 Cre03g1985 494015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1985 586 SMART PMEI_2 56 208 IPR006501 GO:0004857(InterPro)
Cre03g1985 586 ProSitePatterns Pectinesterase signature 2. 406 415 IPR033131 -
Cre03g1985 586 Pfam Plant invertase/pectin methylesterase inhibitor 59 208 IPR006501 GO:0004857(InterPro)
Cre03g1985 586 FunFam Pectinesterase 255 572 - -
Cre03g1985 586 SUPERFAMILY Pectin lyase-like 256 571 IPR011050 -
Cre03g1985 586 CDD PMEI-like_3 63 214 - -
Cre03g1985 586 FunFam Pectinesterase 57 213 - -
Cre03g1985 586 Pfam Pectinesterase 261 558 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cre03g1985 586 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 213 IPR035513 -
Cre03g1985 586 ProSitePatterns Pectinesterase signature 1. 287 306 IPR018040 -
Cre03g1985 586 Gene3D - 255 572 IPR012334 -
Cre03g1985 586 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 213 IPR035513 -
Cre03g1985 586 NCBIfam pectinesterase inhibitor domain 54 212 IPR006501 GO:0004857(InterPro)
Cre03g1985 586 PANTHER PECTINESTERASE 13 563 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1985 Cre-Chr3:36853599 Cre05g0766 Cre-Chr5:6754181 9.90E-199 dispersed
Cre03g1984 Cre-Chr3:36849676 Cre03g1985 Cre-Chr3:36853599 3.20E-103 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1985 K01051 - csv:101207393 1074.31