Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g2054 ATGGGCATCAAGGGTTTAACCAAGCTTTTAGCTGATAATGCCCCCAAGGGCATGAAGGAGCAGAAGTTCGAAACCTATTTCGGCCGCAAAATCGCAATTGATGCCAGCATGAGTATTTATCAATTTCTTATTGTCGTGGGAAGAAGTGGGACTGAGATGCTGACCAACGAAGCTGGTGAAGTCACTAGCCACTTGCAAGGGATGTTTAACCGGACAATAAGGCTTCTCGAAGCTGGAATTAAGCCAGTCTATGTCTTTGATGGAAAGCCTCCTGATTTGAAAAAACAAGAACTTGCAAAACGTTATTCAAAAAGAGTAGATGCTACCGAGGACCTAGCAGATGCTATCGAGGTTGGCAACAAGGAGGACATTGAGAAATTTAGTAAAAGGACGGTGAAGGTTACAAAGCAGCACAATGATGACTGTAAAAGACTCTTGAGGCTCATGGGAGTGCCTGTGATCGAGGCTCCCTCAGAAGCTGAGGCACAATGTGCTGCGCTTTGCAAGTTAGGAAAGGTTTATGCTGTGGCGTCAGAAGACATGGATTCACTAACATTTGGATCTCCCAGATTTCTTCGTCATTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTGGCTAAGATTTTGGAGGAGCTGAACCTCACCATGGATCAGTTTATCGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAATATCCGAGGTATAGGGGGGCAGACTGCTCTAAAGCTTATCCGTCAACATGGGTCTATAGAAACTATATTAGAGAACATAAATAAAGAGAGGTACCAAATTCCAGATGATTGGCCTTATCAAGAGGCCCGGCAGCTTTTTAAAGAACCACTAGTATGTACTGACGAAGAGCAGCTTGACATTAAGTGGACTACTCCAGATGAAGAAGGCTTATTAACATTTTTGGTGAATGAGAATGGGTTCAACAGTGAAAGAGTGACAAAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGATGGAATCATTTTTCAAGCCCGTCACTAATCCTTCAGTATCCATTAAGCGAAAGGAGACATCAGAAAAGCCTACCAAACAAGCAATAACTAAGAAATCGAAGTCCAGTGGTGGTAAAAGAAAGTAG 1149 42.82 MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRVDATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIETILENINKERYQIPDDWPYQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSIKRKETSEKPTKQAITKKSKSSGGKRK 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37592333 37603938 - CrPI670011_03g020540.1 Cre03g2054 494084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g2054 382 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788(InterPro)
Cre03g2054 382 Gene3D - 223 286 - -
Cre03g2054 382 SMART 53exo3 29 299 IPR002421 GO:0003677(InterPro)|GO:0008409(InterPro)
Cre03g2054 382 SMART HhH_4 221 254 IPR008918 GO:0003677(InterPro)|GO:0003824(InterPro)
Cre03g2054 382 CDD H3TH_FEN1-Euk 222 289 - -
Cre03g2054 382 MobiDBLite consensus disorder prediction 337 356 - -
Cre03g2054 382 MobiDBLite consensus disorder prediction 335 382 - -
Cre03g2054 382 FunFam Flap endonuclease 1 10 222 - -
Cre03g2054 382 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 353 IPR036279 -
Cre03g2054 382 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788(InterPro)
Cre03g2054 382 SMART xpgn3 1 108 IPR006085 GO:0004518(InterPro)
Cre03g2054 382 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Cre03g2054 382 CDD PIN_FEN1 4 332 - -
Cre03g2054 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Cre03g2054 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Cre03g2054 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Cre03g2054 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Cre03g2054 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Cre03g2054 382 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 373 IPR006084 GO:0008409(PANTHER)|GO:0017108(PANTHER)
Cre03g2054 382 Gene3D - 10 222 - -
Cre03g2054 382 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788(InterPro)
Cre03g2054 382 FunFam Flap endonuclease 1 219 286 - -
Cre03g2054 382 SMART xpgineu 147 219 IPR006086 GO:0004518(InterPro)
Cre03g2054 382 Pfam XPG I-region 150 234 IPR006086 GO:0004518(InterPro)
Cre03g2054 382 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g2054 K04799 - - csv:101204273 727.628
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g2054 Cre-Chr3:37592333 Cre10g1583 Cre-Chr10:29874885 6.00E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g15 . . . . . . . . . . . . . . Sed04g0382 . . Bhi02g02229 Tan09g0026 Cmetu02g1464 . . . . . . . . . . . . . Cone5ag0109 Cone1ag1587 Lsi06g00020 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01715 Cam03g1804 Cec03g1851 Cco03g1856 Clacu03g1825 Cmu03g2373 Cre03g2054 . . . Cme02g00001
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g0009 . 105 876 Core DNA Replication Machinery Family AT4G14700 59.1 3.0e-254 875.2
Cre08g0009 . 105 876 Core DNA Replication Machinery Family AT4G12620 61.2 1.6e-263 906.0
Cre08g1518 . 65 425 Core DNA Replication Machinery Family AT2G37560 65.7 3.0e-142 501.9
Cre07g0857 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.8 3.9e-152 535.0
Cre06g1130 . 2 453 Core DNA Replication Machinery Family AT4G29910 60.4 6.1e-153 538.1
Cre11g1348 . 1 283 Core DNA Replication Machinery Family AT1G26840 66.1 4.2e-94 341.7
Cre01g0220 . 61 854 Core DNA Replication Machinery Family AT1G79150 59.6 2.1e-247 852.4
Cre10g1454 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.5 0.0e+00 1350.9
Cre04g2057 . 128 702 Core DNA Replication Machinery Family AT5G46280 81.0 8.9e-269 922.9
Cre02g0837 . 99 845 Core DNA Replication Machinery Family AT2G16440 77.2 0.0e+00 1142.5
Cre11g0844 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1112.4
Cre04g2202 . 7 835 Core DNA Replication Machinery Family AT5G44635 71.2 0.0e+00 1167.9
Cre09g0492 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1219.9
Cre02g2271 . 55 521 Core DNA Replication Machinery Family AT2G29680 61.9 5.8e-163 571.2
Cre02g2271 . 37 482 Core DNA Replication Machinery Family AT1G07270 58.8 2.1e-143 506.1
Cre09g0839 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.0 1.1e-256 882.9
Cre10g2170 . 12 792 Core DNA Replication Machinery Family AT3G09660 73.0 0.0e+00 1094.3
Cre09g1589 . 58 456 Core DNA Replication Machinery Family AT2G14050 85.7 3.5e-197 685.3
Cre09g1588 . 9 238 Core DNA Replication Machinery Family AT2G14050 68.7 2.5e-86 317.0
Cre02g1504 . 1 411 Core DNA Replication Machinery Family AT2G20980 56.4 6.9e-119 424.5
Cre09g0257 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 1.1e-72 270.0
Cre11g1099 . 1 184 Core DNA Replication Machinery Family AT1G19080 69.0 4.3e-71 264.6
Cre11g1099 . 1 184 Core DNA Replication Machinery Family AT3G55490 69.0 4.3e-71 264.6
Cre05g0223 . 6 155 Core DNA Replication Machinery Family AT5G49010 65.3 2.8e-49 192.2
Cre02g1551 . 1 1546 Core DNA Replication Machinery Family AT5G67100 60.7 0.0e+00 1769.6
Cre01g1501 . 24 641 Core DNA Replication Machinery Family AT1G67630 59.5 9.8e-205 710.3
Cre06g0976 . 1 447 Core DNA Replication Machinery Family AT1G67320 64.5 2.9e-183 638.6
Cre08g0134 . 211 654 Core DNA Replication Machinery Family AT5G41880 65.5 1.7e-177 619.4
Cre04g1149 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.5 0.0e+00 1788.9
Cre10g1868 . 1 428 Core DNA Replication Machinery Family AT2G42120 74.8 8.5e-195 676.8
Cre06g0976 . 1 447 Core DNA Replication Machinery Family AT1G67320 64.5 2.9e-183 638.6
Cre09g1984 . 1 127 Core DNA Replication Machinery Family AT1G09815 61.5 5.5e-38 154.1
Cre02g2512 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.5 0.0e+00 2983.0
Cre01g0417 . 62 2110 Core DNA Replication Machinery Family AT1G08260 67.8 0.0e+00 2775.3
Cre02g2512 . 25 2202 Core DNA Replication Machinery Family AT2G27120 68.1 0.0e+00 2947.9
Cre01g0417 . 84 2190 Core DNA Replication Machinery Family AT2G27120 65.2 0.0e+00 2722.6
Cre01g1601 . 726 1192 Core DNA Replication Machinery Family AT5G22110 66.2 6.7e-180 627.5
Cre02g2561 . 273 1004 Core DNA Replication Machinery Family AT5G22010 73.4 1.2e-302 1036.2
Cre10g0592 . 3 332 Core DNA Replication Machinery Family AT1G63160 91.5 2.4e-173 605.1
Cre04g0578 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.2e-178 622.9
Cre11g2009 . 19 337 Core DNA Replication Machinery Family AT1G21690 81.6 2.3e-144 508.8
Cre08g0540 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.1 1.9e-155 545.8
Cre11g0650 . 26 604 Core DNA Replication Machinery Family AT2G06510 68.1 4.8e-244 840.9
Cre10g0366 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.3 4.1e-195 678.3
Cre06g2422 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.1 7.0e-248 853.6
Cre10g0366 . 10 812 Core DNA Replication Machinery Family AT5G45400 50.7 9.6e-227 783.9
Cre06g2422 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.9 3.3e-240 828.2
Cre10g0366 . 5 798 Core DNA Replication Machinery Family AT4G19130 53.7 3.7e-225 778.5
Cre03g2054 . 1 376 Core DNA Replication Machinery Family AT5G26680 85.7 6.4e-184 640.6
Cre05g0360 . 1 1110 Core DNA Replication Machinery Family AT1G08840 52.5 8.0e-300 1026.9
Cre07g1923 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.0 1.4e-115 412.9
Cre02g2464 . 2 762 Core DNA Replication Machinery Family AT1G08130 69.1 1.4e-296 1015.8
Cre02g2464 . 162 762 Core DNA Replication Machinery Family AT1G49250 69.1 2.1e-242 835.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006601 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 2 1 2 1 1 1 1 1 2 2 1 1 3 2 1 37