Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0127 ATGCTTCCTTCCCATCCTCTTTATCCATTAACATCACATGTGCTTGATTTTGGGAAGAATCACATTGAAGGGAAGCTTCCTGAGGGCGTTGGGGCTTTGAAGAATCTTCAAATTCTCAATCTCAGAAGCAACTTGATTTCTGGTACAGTGTTTTCTGTTGCCTTCCATAATCTGACTGAACTTCTTGTTGTTGATTTGTCAGAAAATTCTCATCTGTTGAGTGATATTCTTAGTGAGATTGGGAAGCTTGAGAAGCTTAAGAAGCTATGGCTTTACAGCTCTGGTTTCTATGTTCTTTCTCAAAACAATCTCACCGGGGAACGCCCTGAAATGTTGGGTTCTTCTTTGAAGAATTTGGTGTCTTTACATGTTTCTGAGAATAAGCTTGTGGGGTCTTTCCCAAATGGGTGTTTGTACTGGAAAAGGCATAGTGGGAAATCTCGTGATTTGAGCCTATCAGGATGGGTTATCAACAATGGGTTTTCTGGGGATTTTACTAAAGGTTTGTGGTCATTGCCTAAGATTAAGCTCATCAGAGCTGAAAACAATGGTTTCTCTGGTGAAATTCTAAAGTCTATATCTATGGCTGCTCAGCTTGATAACAACAGTTTTTCAAGTAAAATACCTCGGGGTCTCGGGTCTATTCGAAGCTTATATCGATTCTCTGCGTTGCTCAATCGCTTTTATGGCAATATTCTTACTCGAGAAATTCCTACTTCCGTTGCAGATCCACCAGTGTTAACTTATCTTGATCTTTCTGATAATAATCTCACTGCTTCATTTCTGCAAGGAAATCCTGATCTTTGTGGCCCTGGATGTGGGAGTTCTAAGTTTAGCCAAGTGTTCATTTTAAGCTTACCGAGCTGTGAACTGATCAACGTAAAGAAACTCGTTAATTTTGGGAGTCATTCGTGGAAGTCGTTGAAAGCTGGGGCCAAGAATTTGGCCAAGATCAGGCACAAAAACGTCATCAAAGGAAGCTTGGCTGACTTGATATGCAGCAATGATTCTTGCCTGAATTGGAATGTGAGACTGAGAATTTCTATTGAGGTTGCTCAAGGACTAGCTTACATTAACAAGGACAATGTCCCACATTTACTTCATCGAAATGCCAAATTGTCGCATATTCTATTGGATGCTGACTTTGTCCTGAAGTTCAAGGATTTCGCTCTTCACCATATCGTTGGAGAGTCGCCAGTTCACTCGACAGTAGCTTCGGAACCTACTCATTCCTGCTGTACTGCATCAGAATATAAATACAACAAAAAGGCAACAGAGCAAATGGATGTGTACAGCTTTGGTGTAGTGTTGCTAGAGCTGGTGACTGGTAGACAAGCCGAGCGTCGTCCAGTGGGTGAGAAGGAAGGTGAACATAGCCAATGGAGCTTCCCAAGTCTTGGACTCAAGCGTCTCGGAACATTGTCAACGACAAATGCTGGAAGCTCTAGACATTGCCCTCCAATGCACTTCTATAATGCCTGA 1482 42.04 MLPSHPLYPLTSHVLDFGKNHIEGKLPEGVGALKNLQILNLRSNLISGTVFSVAFHNLTELLVVDLSENSHLLSDILSEIGKLEKLKKLWLYSSGFYVLSQNNLTGERPEMLGSSLKNLVSLHVSENKLVGSFPNGCLYWKRHSGKSRDLSLSGWVINNGFSGDFTKGLWSLPKIKLIRAENNGFSGEILKSISMAAQLDNNSFSSKIPRGLGSIRSLYRFSALLNRFYGNILTREIPTSVADPPVLTYLDLSDNNLTASFLQGNPDLCGPGCGSSKFSQVFILSLPSCELINVKKLVNFGSHSWKSLKAGAKNLAKIRHKNVIKGSLADLICSNDSCLNWNVRLRISIEVAQGLAYINKDNVPHLLHRNAKLSHILLDADFVLKFKDFALHHIVGESPVHSTVASEPTHSCCTASEYKYNKKATEQMDVYSFGVVLLELVTGRQAERRPVGEKEGEHSQWSFPSLGLKRLGTLSTTNAGSSRHCPPMHFYNA 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3138821 3143594 - CrPI670011_04g001270.1 Cre04g0127 494431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0127 493 Pfam Leucine Rich Repeat 247 260 IPR001611 GO:0005515(InterPro)
Cre04g0127 493 Gene3D Ribonuclease Inhibitor 1 276 IPR032675 -
Cre04g0127 493 Gene3D Transferase(Phosphotransferase) domain 1 277 466 - -
Cre04g0127 493 ProSiteProfiles Protein kinase domain profile. 175 493 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g0127 493 Pfam Protein tyrosine and serine/threonine kinase 325 444 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g0127 493 SUPERFAMILY Protein kinase-like (PK-like) 274 446 IPR011009 -
Cre04g0127 493 SUPERFAMILY RNI-like 12 260 - -
Cre04g0127 493 PANTHER UNNAMED PRODUCT 99 450 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0127 Cre-Chr4:3138821 Cre03g0925 Cre-Chr3:8021185 6.10E-24 dispersed
Cre04g0127 Cre-Chr4:3138821 Cre04g0129 Cre-Chr4:3150143 1.30E-82 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64007 PF07714 PK_Tyr_Ser-Thr 8.80E-15 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0127 - - - 0.0