Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0129 ATGGCTTCCCCCTTCAAACCTCCATTGTTGCTCTTTTTGTCCTTCGCTTTCTTCATTTTGGGTTCTAGTTCATCTGAGGAATCGACCCTTTTGACCTTCAAAGCCTCCATTAAAGATTCAACAAACTCTCTCTCCAACTGGGTTTCTTCTTCTCAGACCCATTTCTGTAATTGGACTGGAATTTCTTGTGCCAACTCTTCTCCTTCTTTGCTTTCGGTTTCCGCCATTGATCTTCAGGGTTTGAACCTTTCTGGGGAAATTTCATCTTCTCTTTGTGAACTCCCTCGTTTGGCCCATCTTAATCTTGCGGATAATCGGTTTAATCAGCCGATTCCTCTTCATCTCTCGCAGTGCAGCTCGTTGGAGACTTTGAATCTGAGTAATAATCTTATTTGGGGAACGATCCCAGATCAGATTTCTCTGTTTGGTTCTTTGCGAGTGCTTGATTTAGGGAAGAATCACATTGAAGGGAAGATTCCTGAGGGCATTGGGGCTTTGAATAATCTACAAATTCTCAATCTCAGAAGCAACTTGATTTCTGGTACAGTTCCTTCTGTTGTCTTTCATAATCTGACTGAACTTCTTGTTGTTGATTTGTCTGAAAATTCTTATCTGTTGAGTGATATTCCTAGTGAGATTGGGAAGCTTGATAAACTCGAGGAGTTATTGCTTCACACCTCTGGTTTCTATGGTGAAATCCCTTCTTCTTTGTTGGGTTTGAGAAGTTTGAGTGTTTTGGATCTTTCACAGAACAATCTCACTGGGAAACTCCCTGAAATGTTGGGTTCTTCTTTGAAGAATTTGGTGTCTTTTGATGTTTCTGAGAATAAGCTTGTGGGGTCTTTCCCAAATGGGTTTTGTAGTGGAAAAGGCCTTGTGAGTCTTAGTGTTCATACCAATTTTTTCACTGGGAGTTTGCCTAATTCCTTGAACCAGTGCTTGAATCTTGAGAGGTTTCAAGTTCAGAACAACGGGTTTTCTGGGGATTTTCCTAAAGCTTTGTGGTCATTGCCTAAGATTAAGCTCATCAGAGCTGAAAACAATGGTTTCTCTGGTGAAATTCCAGAGTCTATATCTATGGCTGCTCAGCTTGAGCAAGTTCAGCTTGATAACAACAGTTTTTCAAGTAAAATACCTCGGGGTCTCGGGTCTATTCGAAGCTTATATCGATTCTCTGTGTCGCTCAATCGCTTTTATGGCGAATTGCCACCAAACTTCTGTGATTCACCATTAATGAGTATAATCAATTTGTCACACAATTCTCTTTCCGGTCGAATTCCCGAGCCGAAAAACTGCAAGAAACTGGTCTCTTTGTCCTTAGCAGGCAATAGTCTTACTGGAGGAATTCCTACTTCCCTTGCAGATCTACCTGTGTTAACTTATCTTGATCTTTCTGATAACAATCTCACTGGTTCGATCCCTCAAGGACTTGAAAACCTAAAGCTTGCACTCTTTAATGTTTCGTTCAATCAACTATCGGGCGCTGTTCCCTTCTCTTTGATTTCGGGGCTACCAGCTTCATTCCTGCAAGGAAATCCTGATCTTTGTGGCCCTGGTTTGCAAACTCCTTGTTCTCAGGGCCATCCAACAAACCATATGTATAGACTTAACAAAATGACATGTGCCCTCATCTCTCTAGCTTCTGTTTTAGGAGTTCTGAGTTTAGCTGCTGGGTTCATTCTGTATTATCGATCCTACAAACCGAAATCCCGAATCGATAACTGGCATTCGGTCTACTTCTATCCTCTTAGAATCAGCGAGCATGAGTTGATCATGGGGATGAATGAGAAAACTGCACAAGGATGTGGAGGAGCTTTTGGCCAAGTGTTCATTTTAAGCTTACCAAGCCGTGAACTGATTGCCGTAAAGAAACTCATTAATTTTGGGAGTCGTTCATGGAAGTCGTTGAAAGCTGAGGTCAAGACATTGGCCAAGATCAGGCACAAAAACATCATCAAAATTCTTGGGTTTTGCCATTCTGATGATGCCATTTTTCTGATTTATGAATTCTTACACAAAGGAAGCTTGGCTGACTTGATATGCAGAAATGACTCTTGTCTCAATTGGAATGTGAGACTGAGAATTGCCATTGAGGTTGCTCAAGGACTAGCTTACATTCACAATGACTATGTCCCACATTTACTTCATCGAAATGTCAAATCGTCCAACATTCTATTGGACGCCGACTTTGTCCCAAAGCTCATGGATTTTGCTCTTCACCATATCATTGGAGAGTCGGCATTTCAGTCGACAGTAGCTTCGGAATCTTCTCATTCCTGCTACATTGCACCAGAATATAAATACAACAAAAAGGCAACAGAGCAAATGGATGTGTACAGCTTTGGTGTAGTGTTGCTAGAGCTGGTGACTGGTAGACAAGCTGAGCGCTCGGAATCAACGGACTCTCTCGACGTCGTCCAGTGGGTGAGAAGGAAGGTGAACATAGCCAATGGAGCTTTCCAAGTCTTGGACTCGAGCATCTCGGAACATTGTCAACGACAAATGCTGGAAGCTCTAGACATTGCCCTCCAATGCACTTCTATAATGCCTGAAAAACGACCGTCGATGCTCGAAGTTGTCAAGGCCCTTCAATTGGTTGGATCAACGACAAACCTTCACGATGCAGCCTTCTCGGTTGCAGAGGATGGTTCGGTTTCAAGCAAAAGACCTCCTCTTGCTCCATGA 2685 42.57 MASPFKPPLLLFLSFAFFILGSSSSEESTLLTFKASIKDSTNSLSNWVSSSQTHFCNWTGISCANSSPSLLSVSAIDLQGLNLSGEISSSLCELPRLAHLNLADNRFNQPIPLHLSQCSSLETLNLSNNLIWGTIPDQISLFGSLRVLDLGKNHIEGKIPEGIGALNNLQILNLRSNLISGTVPSVVFHNLTELLVVDLSENSYLLSDIPSEIGKLDKLEELLLHTSGFYGEIPSSLLGLRSLSVLDLSQNNLTGKLPEMLGSSLKNLVSFDVSENKLVGSFPNGFCSGKGLVSLSVHTNFFTGSLPNSLNQCLNLERFQVQNNGFSGDFPKALWSLPKIKLIRAENNGFSGEIPESISMAAQLEQVQLDNNSFSSKIPRGLGSIRSLYRFSVSLNRFYGELPPNFCDSPLMSIINLSHNSLSGRIPEPKNCKKLVSLSLAGNSLTGGIPTSLADLPVLTYLDLSDNNLTGSIPQGLENLKLALFNVSFNQLSGAVPFSLISGLPASFLQGNPDLCGPGLQTPCSQGHPTNHMYRLNKMTCALISLASVLGVLSLAAGFILYYRSYKPKSRIDNWHSVYFYPLRISEHELIMGMNEKTAQGCGGAFGQVFILSLPSRELIAVKKLINFGSRSWKSLKAEVKTLAKIRHKNIIKILGFCHSDDAIFLIYEFLHKGSLADLICRNDSCLNWNVRLRIAIEVAQGLAYIHNDYVPHLLHRNVKSSNILLDADFVPKLMDFALHHIIGESAFQSTVASESSHSCYIAPEYKYNKKATEQMDVYSFGVVLLELVTGRQAERSESTDSLDVVQWVRRKVNIANGAFQVLDSSISEHCQRQMLEALDIALQCTSIMPEKRPSMLEVVKALQLVGSTTNLHDAAFSVAEDGSVSSKRPPLAP 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3150143 3153636 - CrPI670011_04g001290.1 Cre04g0129 494433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0129 894 Gene3D Ribonuclease Inhibitor 184 262 IPR032675 -
Cre04g0129 894 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 264 527 - -
Cre04g0129 894 PANTHER OS04G0122200 PROTEIN 39 131 IPR051809 -
Cre04g0129 894 Pfam Protein tyrosine and serine/threonine kinase 604 863 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g0129 894 ProSiteProfiles Leucine-rich repeat profile. 458 481 IPR001611 GO:0005515(InterPro)
Cre04g0129 894 Gene3D Ribonuclease Inhibitor 23 183 IPR032675 -
Cre04g0129 894 Gene3D Transferase(Phosphotransferase) domain 1 672 881 - -
Cre04g0129 894 Pfam Leucine rich repeat 434 492 IPR001611 GO:0005515(InterPro)
Cre04g0129 894 Pfam Leucine rich repeat 120 179 IPR001611 GO:0005515(InterPro)
Cre04g0129 894 Pfam Leucine Rich Repeat 242 263 IPR001611 GO:0005515(InterPro)
Cre04g0129 894 SMART LRR_typ_2 191 216 IPR003591 -
Cre04g0129 894 SMART LRR_typ_2 240 264 IPR003591 -
Cre04g0129 894 SMART LRR_typ_2 94 118 IPR003591 -
Cre04g0129 894 SMART LRR_typ_2 142 165 IPR003591 -
Cre04g0129 894 SMART LRR_typ_2 456 480 IPR003591 -
Cre04g0129 894 SMART LRR_typ_2 166 190 IPR003591 -
Cre04g0129 894 SMART LRR_typ_2 265 289 IPR003591 -
Cre04g0129 894 FunFam Leucine-rich repeat family protein 25 184 - -
Cre04g0129 894 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Cre04g0129 894 SUPERFAMILY L domain-like 24 287 - -
Cre04g0129 894 SUPERFAMILY Protein kinase-like (PK-like) 604 869 IPR011009 -
Cre04g0129 894 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 671 871 - -
Cre04g0129 894 Gene3D Phosphorylase Kinase; domain 1 602 671 - -
Cre04g0129 894 ProSiteProfiles Protein kinase domain profile. 595 866 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g0129 894 FunFam probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 585 670 - -
Cre04g0129 894 Gene3D Ribonuclease Inhibitor 263 527 IPR032675 -
Cre04g0129 894 SUPERFAMILY L domain-like 205 528 - -
Cre04g0129 894 ProSiteProfiles Leucine-rich repeat profile. 120 142 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0129 Cre-Chr4:3150143 Cre04g1421 Cre-Chr4:33009925 6.80E-58 dispersed
Cre04g0127 Cre-Chr4:3138821 Cre04g0129 Cre-Chr4:3150143 1.30E-82 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64008 PF00069 Pkinase 5.70E-38 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0129 - - - 0.0