Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g0143 | ATGGGAGACCCATATTCAAACTCATCAGCAAGTGTTCTAAAATTCAACTCCCTTCACCACCATTTTTCCCCATCACAACCTTCAAATTCTACCCCACACCTCAACATGTCTCACAATTGCTTCTCTTACCCCTACCCGAACCCGCATCCGCCTCCGCCTCCATCTCCACCGCTCCGTGAGGCTCTGCCGCTTCTCGGGCTGATGTCTCCGCCCGAGCAGCGGCAGGAGCAAGAAGAAGAAGACGACGGCGGAGGCGGGAGAGATGAGGAGGAATCGGTGACGGTGGCGTTACACATAGGGCTACCGAGCCCTAGCGCGGCAGAGATAGCATCTTTGATGTGTGGTTCTTCATCTGAGATTGATCATGTTGGTGATGGAGATCATCATAGCAATAGTAATAATAATAATCAAGATCATGATTTAGGGCAGTCCACCAAAACCCTAATAAAGGGGCAGTATTGGATCCCTACTCCTTCTCAAATTCTCATTGGTCCTACTCAATTCTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGCCCAGAGTCCCTCCGGGGCACGCAGCCAACGGGAATGCTACGACTTCCATGTTACTGCTGCGCACCGGGGTGTCGCAACAACATAGACCACCCTCGAGCCAAACCCTTGAAGGACTTCAGAACCCTGCAAACGCATTACAAGCGCAAGCACGGCCTGAAGCCCTTCATGTGTCGAAAGTGCGGTAAGGCGTTTGCCGTGCGCGGGGACTGGCGGACGCACGAGAAGAATTGTGGCAAGCTTTGGTACTGCATTTGTGGCTCGGATTTCAAACACAAGCGCTCTTTGAAGGACCATGTCAAGGCCTTCGGTAACGACCACGCCGCCTATGGTGGGGGCGGGATCGATGGGTTCGGAGACGAGGAAGATGAGCCTGCTTCAGAAGTCGAGCAGGATAATGATGAGTGA | 996 | 52.11 | MGDPYSNSSASVLKFNSLHHHFSPSQPSNSTPHLNMSHNCFSYPYPNPHPPPPPSPPLREALPLLGLMSPPEQRQEQEEEDDGGGGRDEEESVTVALHIGLPSPSAAEIASLMCGSSSEIDHVGDGDHHSNSNNNNQDHDLGQSTKTLIKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGNDHAAYGGGGIDGFGDEEDEPASEVEQDNDE | 331 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3703774 | 3706641 | - | CrPI670011_04g001430.1 | Cre04g0143 | 494447 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g0143 | 331 | Gene3D | Classic Zinc Finger | 167 | 190 | - | - | |
Cre04g0143 | 331 | PANTHER | ZINC FINGER PROTEIN WIP2 | 31 | 329 | IPR043584 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER) | |
Cre04g0143 | 331 | SMART | c2h2final6 | 168 | 190 | IPR013087 | - | |
Cre04g0143 | 331 | SMART | c2h2final6 | 252 | 272 | IPR013087 | - | |
Cre04g0143 | 331 | SUPERFAMILY | beta-beta-alpha zinc fingers | 237 | 272 | IPR036236 | - | |
Cre04g0143 | 331 | Gene3D | Classic Zinc Finger | 215 | 305 | - | - | |
Cre04g0143 | 331 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 168 | 195 | IPR013087 | - | |
Cre04g0143 | 331 | MobiDBLite | consensus disorder prediction | 309 | 331 | - | - | |
Cre04g0143 | 331 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 170 | 190 | IPR013087 | - | |
Cre04g0143 | 331 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 251 | 275 | - | - | |
Cre04g0143 | 331 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 252 | 272 | IPR013087 | - | |
Cre04g0143 | 331 | SUPERFAMILY | beta-beta-alpha zinc fingers | 164 | 190 | IPR036236 | - | |
Cre04g0143 | 331 | MobiDBLite | consensus disorder prediction | 118 | 142 | - | - | |
Cre04g0143 | 331 | MobiDBLite | consensus disorder prediction | 71 | 91 | - | - | |
Cre04g0143 | 331 | Pfam | Zinc finger, C2H2 type | 168 | 187 | IPR013087 | - | |
Cre04g0143 | 331 | MobiDBLite | consensus disorder prediction | 313 | 331 | - | - | |
Cre04g0143 | 331 | FunFam | zinc finger protein WIP2-like | 167 | 190 | - | - | |
Cre04g0143 | 331 | FunFam | Zinc finger protein WIP2 | 221 | 303 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g0143 | Cre-Chr4:3703774 | Cre10g1839 | Cre-Chr10:32963284 | 7.00E-101 | dispersed | |
Cre04g0143 | Cre-Chr4:3703774 | Cre02g2631 | Cre-Chr2:39577417 | 9.50E-98 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53386 | None | None | None | None | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g0143 | - | - | - | 0.0 |