Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0143 ATGGGAGACCCATATTCAAACTCATCAGCAAGTGTTCTAAAATTCAACTCCCTTCACCACCATTTTTCCCCATCACAACCTTCAAATTCTACCCCACACCTCAACATGTCTCACAATTGCTTCTCTTACCCCTACCCGAACCCGCATCCGCCTCCGCCTCCATCTCCACCGCTCCGTGAGGCTCTGCCGCTTCTCGGGCTGATGTCTCCGCCCGAGCAGCGGCAGGAGCAAGAAGAAGAAGACGACGGCGGAGGCGGGAGAGATGAGGAGGAATCGGTGACGGTGGCGTTACACATAGGGCTACCGAGCCCTAGCGCGGCAGAGATAGCATCTTTGATGTGTGGTTCTTCATCTGAGATTGATCATGTTGGTGATGGAGATCATCATAGCAATAGTAATAATAATAATCAAGATCATGATTTAGGGCAGTCCACCAAAACCCTAATAAAGGGGCAGTATTGGATCCCTACTCCTTCTCAAATTCTCATTGGTCCTACTCAATTCTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGCCCAGAGTCCCTCCGGGGCACGCAGCCAACGGGAATGCTACGACTTCCATGTTACTGCTGCGCACCGGGGTGTCGCAACAACATAGACCACCCTCGAGCCAAACCCTTGAAGGACTTCAGAACCCTGCAAACGCATTACAAGCGCAAGCACGGCCTGAAGCCCTTCATGTGTCGAAAGTGCGGTAAGGCGTTTGCCGTGCGCGGGGACTGGCGGACGCACGAGAAGAATTGTGGCAAGCTTTGGTACTGCATTTGTGGCTCGGATTTCAAACACAAGCGCTCTTTGAAGGACCATGTCAAGGCCTTCGGTAACGACCACGCCGCCTATGGTGGGGGCGGGATCGATGGGTTCGGAGACGAGGAAGATGAGCCTGCTTCAGAAGTCGAGCAGGATAATGATGAGTGA 996 52.11 MGDPYSNSSASVLKFNSLHHHFSPSQPSNSTPHLNMSHNCFSYPYPNPHPPPPPSPPLREALPLLGLMSPPEQRQEQEEEDDGGGGRDEEESVTVALHIGLPSPSAAEIASLMCGSSSEIDHVGDGDHHSNSNNNNQDHDLGQSTKTLIKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGNDHAAYGGGGIDGFGDEEDEPASEVEQDNDE 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3703774 3706641 - CrPI670011_04g001430.1 Cre04g0143 494447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0143 331 Gene3D Classic Zinc Finger 167 190 - -
Cre04g0143 331 PANTHER ZINC FINGER PROTEIN WIP2 31 329 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Cre04g0143 331 SMART c2h2final6 168 190 IPR013087 -
Cre04g0143 331 SMART c2h2final6 252 272 IPR013087 -
Cre04g0143 331 SUPERFAMILY beta-beta-alpha zinc fingers 237 272 IPR036236 -
Cre04g0143 331 Gene3D Classic Zinc Finger 215 305 - -
Cre04g0143 331 ProSiteProfiles Zinc finger C2H2 type domain profile. 168 195 IPR013087 -
Cre04g0143 331 MobiDBLite consensus disorder prediction 309 331 - -
Cre04g0143 331 ProSitePatterns Zinc finger C2H2 type domain signature. 170 190 IPR013087 -
Cre04g0143 331 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 251 275 - -
Cre04g0143 331 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 272 IPR013087 -
Cre04g0143 331 SUPERFAMILY beta-beta-alpha zinc fingers 164 190 IPR036236 -
Cre04g0143 331 MobiDBLite consensus disorder prediction 118 142 - -
Cre04g0143 331 MobiDBLite consensus disorder prediction 71 91 - -
Cre04g0143 331 Pfam Zinc finger, C2H2 type 168 187 IPR013087 -
Cre04g0143 331 MobiDBLite consensus disorder prediction 313 331 - -
Cre04g0143 331 FunFam zinc finger protein WIP2-like 167 190 - -
Cre04g0143 331 FunFam Zinc finger protein WIP2 221 303 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0143 Cre-Chr4:3703774 Cre10g1839 Cre-Chr10:32963284 7.00E-101 dispersed
Cre04g0143 Cre-Chr4:3703774 Cre02g2631 Cre-Chr2:39577417 9.50E-98 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53386 None None None None Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0143 - - - 0.0