Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0159 ATGGCTCCAGGAAGCAGTACCTGCAAAGAAGTTGTTGATTCTCATCCTTCAGTTTCAGGTCATGACATAGCAATGTCTAAATCAGAGAATAATTCTACATCCTCAAAAGGCCCACTTGGTTTGAGTGGGAAAATTGGAGTTTATTCAACCAATGGTGTGCAAGAATTGCTTGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGTGCCCGAATGGCCACACATTGTGCTCAAACTGCAAGATCAAAGTTAGCAACTGTTGCCCGACTTGTCGTCATGAACTTGGAAACATTAGGTGCTTGGCACTGGAAAAGGTAGCTGAGTCACTGGAAATCCCCTGCAAATACCAGAATTTAGGCTGTCAAGATATTTTTCCCTACTACAGTAAGCTTAAGCACGAGCAACACTGTCAATACCGTCCTTACAACTGCCCATATGCTGGATCAGAGTGTTCGGTCTCGGGTGACATCCCGTCTCTTGTTGCACATCTCAAAGATGATCACAAGGTTGACATGCATGATGGGTGTACCTTCAATCATCGCTATGTGAAATCAAATCCACACGAAGTTGAAAATGCCACATGGATGCTAACGGTTTTCAACTGCTTTGGAAAGCAGTTCTGCTTGCATTTTGAGGCATTCCAGCTAGGAATGGCACCTGTTTACATGGCGTTTTTACGATTCATGGGTGACGATAACGAAGCAAAGAAGTTCAGCTACAGTTTGGAAGTGGGTGGCAATGGGCGTAAACTGATATGGCAAGGAATCCCGAGGGGCATCCGCGACAGTCACCGAAAAGTTCGTGACAGCCAGGACGGTCTCATTATTCAAAGAAACCTGGCACTGTATTTTTCGGGAGGAGAAAGGCAAGAGCTGAAGCTGAGAATTACAGACAAGTTTGTTAGGCCGACACTCAACAGCAGGGGTTCGCTCCAAGTGCTGAAGAAACTTGGGAGAAACTTCCAAGCTAATATCAAAAATGTTTCCAATGGTTGTCTATAG 1011 45.0 MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKGPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQCPNGHTLCSNCKIKVSNCCPTCRHELGNIRCLALEKVAESLEIPCKYQNLGCQDIFPYYSKLKHEQHCQYRPYNCPYAGSECSVSGDIPSLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGKQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKFSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITDKFVRPTLNSRGSLQVLKKLGRNFQANIKNVSNGCL 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4287043 4290389 + CrPI670011_04g001590.1 Cre04g0159 494463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0159 336 FunFam E3 ubiquitin-protein ligase SINAT5-like 13 110 - -
Cre04g0159 336 SUPERFAMILY TRAF domain-like 112 299 - -
Cre04g0159 336 FunFam E3 ubiquitin-protein ligase SINAT5-like 168 300 - -
Cre04g0159 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 166 IPR013083 -
Cre04g0159 336 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 59 94 IPR049548 -
Cre04g0159 336 SUPERFAMILY RING/U-box 53 100 - -
Cre04g0159 336 ProSiteProfiles Zinc finger SIAH-type profile. 112 172 IPR013010 GO:0008270(InterPro)
Cre04g0159 336 FunFam E3 ubiquitin-protein ligase SINAT3 111 167 - -
Cre04g0159 336 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 167 300 IPR008974 GO:0005515(InterPro)
Cre04g0159 336 MobiDBLite consensus disorder prediction 1 37 - -
Cre04g0159 336 Pfam Sina, TRAF-like domain 203 300 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cre04g0159 336 CDD Sina 173 300 - -
Cre04g0159 336 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 36 300 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Cre04g0159 336 MobiDBLite consensus disorder prediction 21 37 - -
Cre04g0159 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 113 IPR013083 -
Cre04g0159 336 ProSiteProfiles Zinc finger RING-type profile. 59 95 IPR001841 -
Cre04g0159 336 Pfam Sina, zinc finger 108 183 - -
Cre04g0159 336 CDD RING-HC_SIAHs 57 95 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2680 Cre-Chr2:40024067 Cre04g0159 Cre-Chr4:4287043 3.40E-130 dispersed
Cre04g0159 Cre-Chr4:4287043 Cre05g2840 Cre-Chr5:39042782 2.80E-129 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0159 K04506 - rcu:8260973 563.918