Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0167 ATGGGAGACGGCAATAACACCAATAGAGGCCTTGTCTCCGCCAACGCCGCAAACCGGAACACCACCAACAACAGCAACAACGGCAGCCACCACAAGAAGCCCGAGTGGCTGCAGCAGTACGATCTAATTGGGAAGATCGGAGAAGGAACCTATGGCCTCGTGTTCCTTGCTAAAATCAAACCCCCTTCGCCAAGTCGCGGCAAGTCAATTGCCATCAAAAAATTTAAGCAATCTAAGGACGGTGATGGCGTCTCCCCAACTGCCATCCGCGAAATTATGTTACTGCGGGAAATATCACACGAAAATGTTGTCAAGCTTGTAAATGTTCATATCAACCATGCAGATATGTCGCTGTATTTAGCTTTTGATTATGCTGAACACGACCTCTACGAAATCATTAGACATCATCGGGACAAGGCTAACCATCCCCTTAATCAGTACACCGTTAAATCCTTGCTCTGGCAACTTCTCAATGGTTTGAACTATCTCCACAGCAATTGGATCATTCATCGCGATTTAAAGCCATCAAATATTTTGGTTATGGGTGAAGGAGAAGAACAAGGAGTGGTTAAAATAGCTGATTTTGGACTTGCAAGAATATACCAAGCTCCCTTGAAGCCATTATCTGAAAATGGAGTTGTTGTCACCATTTGGTATCGAGCACCTGAACTTCTCCTTGGAGCAAAGCACTATACTAGTGCTGTTGGTAGTAGACTGGGATATATTCTTTTCCCGAGTAAAAACAATTCTTCCTTTATAAAGAAATTAGATATGTGGGCTGTTGGATGTATTTTTGCCGAGCTTTTGACGTTGAAGCCATTATTTCAAGGTCAAGAAGTCAAAGGGACACCAAATCCTTTCCAGCTTGATCAACTCGACAAGATTTTTAAGGTTTTAGGCCATCCCACACTAGAGAAGTGGCCAACACTTGCTAATCTTCCACATTGGCAACAAGATCTACAGCACATCCAGGGGCATAAATATGACAATGCTGGATTGTATAATGTTGTCCACCTTTCTCCAAAAAGTCCTGCATACGATCTTCTGTCCAAAATGCTGGAGTATGATCCTCGAAAGCGTATAACAGCAGCCCAAGCCCTAGAGCATGAGTATTTTCGTTTAGAACCTCTTCCGGGATACAATGCTCTGGTACCGATTCAACCTGGAGAGAAGGTCATTAATTATCCAACTCGCCCTGTGGACACAACCACAGATTTTGAGGGAACAACTAACCTTCAACCTTCACAAACGGTAACATCTGGAAATACTGTAAACATGCAAGGTGCTCATATGGCAAGATCTGTCCCTCGGGCAATGGGAGTTGGCATGCCTAGGATGCCGCATCAGAGCATGGCTGCCTACAACCTTGCATCTCAGGCTGGGATGGGTATGAATCCTGGTGGCATCCCTATGCAGCGAGGTGTCTCTTCCCAAGCTCATCAGCAACAACAGTTAAGGAGAAAAGATCCTGGAATGGGAATGTCTGGTTATCCTCCCCAGCAGAAACAACAAAGACGTGGTTGCAGGAAGGTCTGA 1536 44.92 MGDGNNTNRGLVSANAANRNTTNNSNNGSHHKKPEWLQQYDLIGKIGEGTYGLVFLAKIKPPSPSRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKANHPLNQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVGSRLGYILFPSKNNSSFIKKLDMWAVGCIFAELLTLKPLFQGQEVKGTPNPFQLDQLDKIFKVLGHPTLEKWPTLANLPHWQQDLQHIQGHKYDNAGLYNVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFRLEPLPGYNALVPIQPGEKVINYPTRPVDTTTDFEGTTNLQPSQTVTSGNTVNMQGAHMARSVPRAMGVGMPRMPHQSMAAYNLASQAGMGMNPGGIPMQRGVSSQAHQQQQLRRKDPGMGMSGYPPQQKQQRRGCRKV 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4478264 4490487 + CrPI670011_04g001670.1 Cre04g0167 494471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0167 511 MobiDBLite consensus disorder prediction 471 485 - -
Cre04g0167 511 CDD STKc_CDK8_like 39 372 - -
Cre04g0167 511 FunFam Cyclin-dependent kinase e-1 28 124 - -
Cre04g0167 511 Gene3D Phosphorylase Kinase; domain 1 19 122 - -
Cre04g0167 511 SUPERFAMILY Protein kinase-like (PK-like) 35 373 IPR011009 -
Cre04g0167 511 ProSiteProfiles Protein kinase domain profile. 40 372 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g0167 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g0167 511 Gene3D Transferase(Phosphotransferase) domain 1 123 383 - -
Cre04g0167 511 ProSitePatterns Protein kinases ATP-binding region signature. 46 74 IPR017441 GO:0005524(InterPro)
Cre04g0167 511 PANTHER CELL DIVISION PROTEIN KINASE 39 372 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0016592(PANTHER)
Cre04g0167 511 SMART serkin_6 40 372 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g0167 511 MobiDBLite consensus disorder prediction 467 511 - -
Cre04g0167 511 Pfam Protein kinase domain 40 372 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0167 Cre-Chr4:4478264 Cre08g1663 Cre-Chr8:29127974 1.10E-65 dispersed
Cre04g0167 Cre-Chr4:4478264 Cre01g1537 Cre-Chr1:28587527 1.70E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64011 PF00069 Pkinase 3.90E-62 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0167 K02208 - csv:101203984 933.71