Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0169 ATGTTGAATTATATTCATCGTCGGAATCTGATCGGAGATCGCGATTTGATGCAGCCATTATTAGTGTTGTCAAAGTCTGATAATAAGTACGACGGATCTGAGATGTTTAACAACACATCAAAAGGGGAAAACGATTCTCACGGAGGAGGAATGAATGTAAATGCACAAAATTTCGTGAAAAATCCACCGGATTCTCTAAGAAGAATCGATCAAATCGCGAAAAACGGCGTAAATTCCGGTAATCCGACGTCGACAGTGAATGCTGAGATTCACTCCAGTCAGCCAGGGGGATCGATTGCGCCAATTCCGACCAGCACATCAGCGACGAACTTGAAGAACCTAAACAATAGCAACAACAGCAACAATAACAACAACAACTCTGGTTTCATGGCGACGAAGGGCGGTGGCAGCGGCGGAAATAATTATCGTTGTGACAGCATGGAGACGCCGGGAGTGGTGATAAAGCCGCACACGGGCGGAGATGTGCGGTGGGATGCGATTAACATGGTGTCGAAAGGAGGGGCTTTGAATCTAAGCCATTTCCAGTTATTGAAGAGGCTTGGTTATGGGGATATTGGAAGCGTTTATTTGGTTGAATTGAGAGGAACTGATACATTTTTCGCCATGAAAGTGATGGATAAAGCTTCATTAGCAAGTAGGAATAAGCTTTTGAGGGCACAAACAGAAAGGGAAATTCTAGGGCTTTTGGATCATCCATTTTTGCCTACTCTCTATTCCTATTTTGAAACAGATAAGTTCTATTGTTTGGTTATGGAGTTTTGTAGTGGTGGTAATCTTCATTCTCTTCGACAAAAGCAACCTAATAAGTATTTTACAGAAGAAGCTGCCAGATTCTATGCATCGGAGGTTCTATTAGCACTGGAATACCTTCATATGTTAGGCATAGTCTATAGAGATTTGAAACCCGAAAATCTCTTAATCCGAGACGAAGGTCACATCATGCTCTCCGATTTCGATCTCTCTCTCCGCTGCTCCGTCAGCCCCACTCTTGTCAAATCCTCCTCCGTCAACGTCAACGGCAGCTCCGCCACCGGCAATACCGGCGCCAATGGCGGAGGCAGCGGTGGTATCCTCGACGACGAGTTCGTCGTCCACGGCTGCATGCAGCCTTCCAACTTCCTCCCTCGCATCCTCCCTTCCAAGAAGAACCGCAAGTCCAAATCCGACTTCGGCCTCTTCGTCGGCGGCTCCCTCCCTGAACTCATGGCCGAGCCTACCAACGTCAGATCTATGTCCTTCGTCGGCACTCACGAGTATCTCGCTCCGGAGATCATCCAAGGCGAAGGCCACGGCAGCGCCGTCGACTGGTGGACCTTCGGAATCTTCCTCTACGAGCTTCTCCACGGAACCACGCCTTTCAAAGGATCTGGAAATAGAGCTACTCTGTTCAACGTCGTCGAACAACCACTCAGATTCCCCGATGCGCCGCAAGTCAGTCTAGCCGCTAGAGATCTGATCAGAGGGCTCCTCGTCAAGGAGCCGCAAAAAAGAATCGCATATCGGAGAGGCGCAACTGAGATTAAACAGCATCCTTTCTTCGACGGAGTGAATTGGGCGTTGGTGAGAAGCGCTATGCCGCCGCACGTCCCGGAGCCGGTCGATTTCTCGCAGTTCGCTAGAAAGAAGAACTGCACCGGAGCGGCGGAAGACAAGAAACCGGTGGAAATACCGGCGGCTACGGCGTCGACCACGGCAACCCCGGCGGCGGCGGAGAATTCTTCGCCTTCTACTGGTAGCGATCCCAATTATGTGGATTTTGAGTACTTCTAG 1791 49.47 MLNYIHRRNLIGDRDLMQPLLVLSKSDNKYDGSEMFNNTSKGENDSHGGGMNVNAQNFVKNPPDSLRRIDQIAKNGVNSGNPTSTVNAEIHSSQPGGSIAPIPTSTSATNLKNLNNSNNSNNNNNNSGFMATKGGGSGGNNYRCDSMETPGVVIKPHTGGDVRWDAINMVSKGGALNLSHFQLLKRLGYGDIGSVYLVELRGTDTFFAMKVMDKASLASRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPNKYFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLIRDEGHIMLSDFDLSLRCSVSPTLVKSSSVNVNGSSATGNTGANGGGSGGILDDEFVVHGCMQPSNFLPRILPSKKNRKSKSDFGLFVGGSLPELMAEPTNVRSMSFVGTHEYLAPEIIQGEGHGSAVDWWTFGIFLYELLHGTTPFKGSGNRATLFNVVEQPLRFPDAPQVSLAARDLIRGLLVKEPQKRIAYRRGATEIKQHPFFDGVNWALVRSAMPPHVPEPVDFSQFARKKNCTGAAEDKKPVEIPAATASTTATPAAAENSSPSTGSDPNYVDFEYF 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4533337 4535458 - CrPI670011_04g001690.1 Cre04g0169 494473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0169 596 MobiDBLite consensus disorder prediction 102 134 - -
Cre04g0169 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 302 314 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g0169 596 Gene3D Transferase(Phosphotransferase) domain 1 395 538 - -
Cre04g0169 596 CDD STKc_phototropin_like 179 541 - -
Cre04g0169 596 MobiDBLite consensus disorder prediction 566 588 - -
Cre04g0169 596 MobiDBLite consensus disorder prediction 553 591 - -
Cre04g0169 596 SUPERFAMILY Protein kinase-like (PK-like) 178 549 IPR011009 -
Cre04g0169 596 FunFam serine/threonine-protein kinase D6PK-like 265 332 - -
Cre04g0169 596 SMART serkin_6 181 520 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g0169 596 FunFam Serine/threonine-protein kinase AGC1-5 179 264 - -
Cre04g0169 596 PANTHER FLIPPASE KINASE 1-RELATED 116 548 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cre04g0169 596 Gene3D Phosphorylase Kinase; domain 1 179 264 - -
Cre04g0169 596 Gene3D Transferase(Phosphotransferase) domain 1 265 334 - -
Cre04g0169 596 ProSiteProfiles Protein kinase domain profile. 181 520 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g0169 596 FunFam Serine/threonine-protein kinase AGC1-7 413 538 - -
Cre04g0169 596 Pfam Protein kinase domain 182 334 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g0169 596 Pfam Protein kinase domain 369 520 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1029 Cre-Chr1:16858212 Cre04g0169 Cre-Chr4:4533337 3.30E-152 dispersed
Cre04g0169 Cre-Chr4:4533337 Cre10g1529 Cre-Chr10:29217918 1.80E-147 dispersed
Cre04g0169 Cre-Chr4:4533337 Cre04g1741 Cre-Chr4:35499566 6.00E-151 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64012 PF00069 Pkinase 1.00E-21 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0169 - - - 0.0