Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0306 ATGATGGTTAAGGAAAATTTGCTGCAGAGAGTTGATGACAATGCTAAAGAGAATGATTGTTCGAGTATTGGGAATGAAGATTTGGGTTCTCAGTCTCGCCACAGTGTAGGGAAGGAATCCGGGGTCAGTTGTCGTGTGTGTCAATGTATTGAATCTGACAGAAGAGGTGATGCTGTTTTAGGATTTCTGGGCATCACTCCTCCAATTATGGAAGCAAGAAAATGTGATGGGGATTCTAAGCCTGAGAAGCAAAGTGCAGAAAATGTTTATGATGGTTCTGAGCTGAAAAAAGATGTTAAAGGGGATTCTGGTTCAATTAAGTTCATAGGCCCTAATGGGGAGGTTTTCATTTGCAAAGCTGATATCGAAATGGGTTCATGTCATCATGAAGATGTATTAGTGGAGCTTGGGTGTTCTTGCAAGAGTGACCTTGCACTTGTACACTATGCATGTGCTCTCAAGTGGTTTGTCAGCCATGGATCTACAGTTTGTGAAATCTGTGGATGTACTGCAGAAAATATTAGAACTGATGACTTTAGAAAGGTTGTGAGTTCCTTGAAAGAATATGAAGCTTTGAGGGAAAGAACTGTTAGTGGGGAACCTAATCCTATGCAGACTATTGCTGGTACCGATATAGATCCTGATGCTGTTGCTGCTGTCCGCAGGCAGCGGCTAAGTGAAATCTCATTGTGGTTCAGTCCTCATAATTATAGTAGCAACAATAACTCTACTGCAGCCTCCCAGGTTGTTTCTGAACATCTGAATACCGTCTCAGAAAATGTTGTTCATTCCGAAAATCCTGCCACCAGGTGGGCTGTTGAGGGTACTGGAATTCTCCTTGCTACAGGGCTGCTTACTGTTACGCTTGCTTGCCTCATAGCTCCTCGTGTGGGGAAGAAAACTGCGAAAAGTGGCCTTCATATTCTTCTTGGAGGAGTTTGTGCGTTAACAGTTGTGGTTTTCTTCCGCTTTTTTGTGCTAACCAGGATAAAATATGGACCTGCACGATACTGGGCCATTTTGTTCGTCTTTTGGTTCCTGGTGTTTGGTATTTGGGCGTCGAGGACACATGCTGCTCATACGACGTAA 1089 43.43 MMVKENLLQRVDDNAKENDCSSIGNEDLGSQSRHSVGKESGVSCRVCQCIESDRRGDAVLGFLGITPPIMEARKCDGDSKPEKQSAENVYDGSELKKDVKGDSGSIKFIGPNGEVFICKADIEMGSCHHEDVLVELGCSCKSDLALVHYACALKWFVSHGSTVCEICGCTAENIRTDDFRKVVSSLKEYEALRERTVSGEPNPMQTIAGTDIDPDAVAAVRRQRLSEISLWFSPHNYSSNNNSTAASQVVSEHLNTVSENVVHSENPATRWAVEGTGILLATGLLTVTLACLIAPRVGKKTAKSGLHILLGGVCALTVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8610197 8617784 + CrPI670011_04g003060.1 Cre04g0306 494610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0306 362 MobiDBLite consensus disorder prediction 21 36 - -
Cre04g0306 362 PANTHER ZINC FINGER, RING-CH-TYPE 36 351 - -
Cre04g0306 362 MobiDBLite consensus disorder prediction 15 36 - -
Cre04g0306 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 177 IPR013083 -
Cre04g0306 362 ProSiteProfiles Zinc finger RING-CH-type profile. 110 174 IPR011016 GO:0008270(InterPro)
Cre04g0306 362 SMART ringv_2 127 168 IPR011016 GO:0008270(InterPro)
Cre04g0306 362 SUPERFAMILY RING/U-box 135 170 - -
Cre04g0306 362 Pfam RING-variant domain 133 167 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0306 Cre-Chr4:8610197 Cre10g2275 Cre-Chr10:37048316 7.70E-08 dispersed
Cre04g0306 Cre-Chr4:8610197 Cre11g1124 Cre-Chr11:8838846 5.30E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0306 - - - 0.0