Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g0365 | ATGGCGCAGGTTTCTCAGCTGCCTTGCGACGGCGATGGCATTTGCATGCTTTGCCGGGCTAACACTTCCGATATGGAGACGATCACTTGCAAAACTTGCGTTACTCCTTGGCATGTCGATTGTCTGTCAAATCCCCCTGAAACCCTAGCTTGTACTCTTCAATGGGACTGTCCCGACTGTTCACCGCCTCCTGAACATGCATCCCTTCCTCCGCCGTACAATTCTTCACTCCCAACTCTGCCTTCTAATGACCTCATTGCTGCGATTCGAGCCATTGAGGCCGATTCTTCCCTTACTGACGGCGAGAAGGCAAAGAAACGCCAGGAGCTGCTTACCGGAAAGTCACGGTCCGACGAGAATGATCTTAAGAGAAAACAAGGAGACGATGTTTTGGATTTGTTTGATGAGAGATTGAACTGTTCTTTCTGCATTCAGTTACCTGATAGGCCAGTCATTATTACTTATTATCCTCATGGTGAAGAATCACAATTGTCATTTGATCAAACTCTTTGGATTGAAAAGACGACCAATTCGAATGGAACTTTAGCTGAAATCACCAAGTTAGAGAACAATGGTGGCCTGAACAAGATTAACAATGTTGGTCTAAACAAGATTGTGTTACCGATTGGAAAAGAGAGGAAGGGCTGGCAAGCATTTTATACCCTTCTAAATAGCTACCCTTTAACCGCAACATTAACTCCTGTTGTAGACTCTGTTACTGCTGATTACTTTAGGGATCTCGTTCATTTGCAAACTCCATGTGGCCACAATTTTTGCTTAAAATGTTTCCAGAAGTGGATTGGACTAGGAAAGAACACTTGTGCAAAGTGTCGCTGTGTGATTCCTGCTAAAATGGCTAGCCAGCCCCGTATTAATTCCACCCTTGTAGTGGCCATTCGTATGGCTAAATTGTCAAAATCATTTGTTTCTGGAGGACCTCAGAAGGCTTATCATTATGTCCACAATCAAAATAGACCAGATAAAGCCTATACCACTGACCGGGCACAAAAAAAAGGAAAAGCTAATGCTGCGAGTGGAAAAATATTTGTTACAATTCCATCTGATCATTTCGGTCCTATTCCTGCCAAAAATGATCCTGAGAGAAACCAGGGTGTTCTGGTTGGTGAATGCTGGGAGGATAGGCTAGAATGTCGCCAATGGGGTGCTCACTTTCCACATATTGCAGGTATAGCGGGACAGTCAAATATTGGTGCACAATCAGTGGTTCTTTCTGGTGGCTACCAGGATGATGAAGATCATGGGGAGTGGTTCCTCTACACTGGAAGTGGGGGTCGAGACCTTAGTGGGAACAAGCGTACAAGCAAGGATCAGTCTTTTGACCAGAAATTTGAAAAATATAACAAAGCGCTACAAGTTAGTTGCTTGAAAGGTTATCCTGTTAGGGTTGTTAGATCTCACAAAGAAAAGCGTTCCTCATATGCTCCAGAGAAGGGATTGCGTTATGATGGAATTTATAGGATTGAGAAGTGTTGGCGTAAAGTGGGAATTCAGGGCTTTAAAGTATGTCGGTATTTATTTGTTAGATGCGACAATGATCCTGCTCCATGGACAAGCGATGAACATGGAGATCGACCTAGACCCTTACCATCAATTCCAGAGTTGAAAAAAGCGACAAATATTACGGAGAGGAAGGAAGGTCCATCATGGGACTTTGATGAGAAAGATAGCCGGTGGAAGTGGACCAAACCTCCCCCGACAAGCATGAGACCAGTTGAAACCGAAGATTCTGCCTCTGGGAAGAGGTCAAGGAGAAAAATTAGGCAATCTCATGACATGAACGTCCGAGAAAGGTTACTGAAAGAGTTTAGCTGCCTTATTTGTTGGGAGGTGATGAATCTGCCAATTACTACCCCATGTGCCCATAACTTCTGCAAATCATGCTTGGAAGGTGCTTTTGCGGGCAAGACATTCTTGAGAGAGAGAAGCAGTGGTGGACGGAGTCTTAGATCCCGAAAGAATGTCATGACTTGTCCTTGTTGTCCGACGGATATATCAGATTTTCTACAGAATCTTCAGGTAAGCTTGAAGAAGAAGGGGATGAAATCTGAAAAGCTTTGTGAAGAAGAGATAGATAGGGAAGAGGAGAATGAGGGAAAAGATGAAGTGGAAAAAAGAAAGCAAGCAAAGGTGGTGGTTAATGATGGGGAGGAAAAACCAGTCATTTGA | 2187 | 43.94 | MAQVSQLPCDGDGICMLCRANTSDMETITCKTCVTPWHVDCLSNPPETLACTLQWDCPDCSPPPEHASLPPPYNSSLPTLPSNDLIAAIRAIEADSSLTDGEKAKKRQELLTGKSRSDENDLKRKQGDDVLDLFDERLNCSFCIQLPDRPVIITYYPHGEESQLSFDQTLWIEKTTNSNGTLAEITKLENNGGLNKINNVGLNKIVLPIGKERKGWQAFYTLLNSYPLTATLTPVVDSVTADYFRDLVHLQTPCGHNFCLKCFQKWIGLGKNTCAKCRCVIPAKMASQPRINSTLVVAIRMAKLSKSFVSGGPQKAYHYVHNQNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPIPAKNDPERNQGVLVGECWEDRLECRQWGAHFPHIAGIAGQSNIGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKYNKALQVSCLKGYPVRVVRSHKEKRSSYAPEKGLRYDGIYRIEKCWRKVGIQGFKVCRYLFVRCDNDPAPWTSDEHGDRPRPLPSIPELKKATNITERKEGPSWDFDEKDSRWKWTKPPPTSMRPVETEDSASGKRSRRKIRQSHDMNVRERLLKEFSCLICWEVMNLPITTPCAHNFCKSCLEGAFAGKTFLRERSSGGRSLRSRKNVMTCPCCPTDISDFLQNLQVSLKKKGMKSEKLCEEEIDREEENEGKDEVEKRKQAKVVVNDGEEKPVI | 728 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 11230813 | 11241658 | - | CrPI670011_04g003650.1 | Cre04g0365 | 494669 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g0365 | 728 | SUPERFAMILY | RING/U-box | 604 | 672 | - | - | |
Cre04g0365 | 728 | MobiDBLite | consensus disorder prediction | 523 | 594 | - | - | |
Cre04g0365 | 728 | Pfam | SAD/SRA domain | 369 | 518 | IPR003105 | - | |
Cre04g0365 | 728 | SUPERFAMILY | RING/U-box | 236 | 285 | - | - | |
Cre04g0365 | 728 | Pfam | Zinc finger, C3HC4 type (RING finger) | 250 | 277 | IPR018957 | GO:0046872(InterPro) | |
Cre04g0365 | 728 | ProSitePatterns | Zinc finger PHD-type signature. | 15 | 60 | IPR019786 | - | |
Cre04g0365 | 728 | ProSiteProfiles | Zinc finger PHD-type profile. | 12 | 63 | IPR019787 | - | |
Cre04g0365 | 728 | Pfam | RING-type zinc-finger | 611 | 642 | IPR027370 | - | |
Cre04g0365 | 728 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 71 | IPR013083 | - | |
Cre04g0365 | 728 | SMART | G9a_1 | 362 | 519 | IPR003105 | - | |
Cre04g0365 | 728 | MobiDBLite | consensus disorder prediction | 692 | 728 | - | - | |
Cre04g0365 | 728 | Gene3D | - | 338 | 534 | IPR036987 | - | |
Cre04g0365 | 728 | MobiDBLite | consensus disorder prediction | 544 | 567 | - | - | |
Cre04g0365 | 728 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 238 | 331 | IPR013083 | - | |
Cre04g0365 | 728 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 598 | 721 | IPR013083 | - | |
Cre04g0365 | 728 | MobiDBLite | consensus disorder prediction | 704 | 728 | - | - | |
Cre04g0365 | 728 | SUPERFAMILY | FYVE/PHD zinc finger | 7 | 66 | IPR011011 | - | |
Cre04g0365 | 728 | MobiDBLite | consensus disorder prediction | 523 | 537 | - | - | |
Cre04g0365 | 728 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 3 | 712 | IPR045134 | GO:0010216(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER) | |
Cre04g0365 | 728 | FunFam | E3 ubiquitin-protein ligase ORTHRUS 2 | 338 | 533 | - | - | |
Cre04g0365 | 728 | ProSitePatterns | Zinc finger RING-type signature. | 626 | 635 | IPR017907 | - | |
Cre04g0365 | 728 | ProSiteProfiles | YDG domain profile. | 367 | 515 | IPR003105 | - | |
Cre04g0365 | 728 | SUPERFAMILY | PUA domain-like | 341 | 538 | IPR015947 | - | |
Cre04g0365 | 728 | SMART | ring_2 | 250 | 277 | IPR001841 | - | |
Cre04g0365 | 728 | SMART | ring_2 | 611 | 667 | IPR001841 | - | |
Cre04g0365 | 728 | MobiDBLite | consensus disorder prediction | 99 | 122 | - | - | |
Cre04g0365 | 728 | ProSiteProfiles | Zinc finger RING-type profile. | 611 | 667 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g0365 | Cre-Chr4:11230813 | Cre11g0567 | Cre-Chr11:2722797 | 3.10E-303 | dispersed | |
Cre06g2462 | Cre-Chr6:32442417 | Cre04g0365 | Cre-Chr4:11230813 | 3.30E-06 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g0365 | K10638 | - | csv:101220457 | 890.952 |