Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0365 ATGGCGCAGGTTTCTCAGCTGCCTTGCGACGGCGATGGCATTTGCATGCTTTGCCGGGCTAACACTTCCGATATGGAGACGATCACTTGCAAAACTTGCGTTACTCCTTGGCATGTCGATTGTCTGTCAAATCCCCCTGAAACCCTAGCTTGTACTCTTCAATGGGACTGTCCCGACTGTTCACCGCCTCCTGAACATGCATCCCTTCCTCCGCCGTACAATTCTTCACTCCCAACTCTGCCTTCTAATGACCTCATTGCTGCGATTCGAGCCATTGAGGCCGATTCTTCCCTTACTGACGGCGAGAAGGCAAAGAAACGCCAGGAGCTGCTTACCGGAAAGTCACGGTCCGACGAGAATGATCTTAAGAGAAAACAAGGAGACGATGTTTTGGATTTGTTTGATGAGAGATTGAACTGTTCTTTCTGCATTCAGTTACCTGATAGGCCAGTCATTATTACTTATTATCCTCATGGTGAAGAATCACAATTGTCATTTGATCAAACTCTTTGGATTGAAAAGACGACCAATTCGAATGGAACTTTAGCTGAAATCACCAAGTTAGAGAACAATGGTGGCCTGAACAAGATTAACAATGTTGGTCTAAACAAGATTGTGTTACCGATTGGAAAAGAGAGGAAGGGCTGGCAAGCATTTTATACCCTTCTAAATAGCTACCCTTTAACCGCAACATTAACTCCTGTTGTAGACTCTGTTACTGCTGATTACTTTAGGGATCTCGTTCATTTGCAAACTCCATGTGGCCACAATTTTTGCTTAAAATGTTTCCAGAAGTGGATTGGACTAGGAAAGAACACTTGTGCAAAGTGTCGCTGTGTGATTCCTGCTAAAATGGCTAGCCAGCCCCGTATTAATTCCACCCTTGTAGTGGCCATTCGTATGGCTAAATTGTCAAAATCATTTGTTTCTGGAGGACCTCAGAAGGCTTATCATTATGTCCACAATCAAAATAGACCAGATAAAGCCTATACCACTGACCGGGCACAAAAAAAAGGAAAAGCTAATGCTGCGAGTGGAAAAATATTTGTTACAATTCCATCTGATCATTTCGGTCCTATTCCTGCCAAAAATGATCCTGAGAGAAACCAGGGTGTTCTGGTTGGTGAATGCTGGGAGGATAGGCTAGAATGTCGCCAATGGGGTGCTCACTTTCCACATATTGCAGGTATAGCGGGACAGTCAAATATTGGTGCACAATCAGTGGTTCTTTCTGGTGGCTACCAGGATGATGAAGATCATGGGGAGTGGTTCCTCTACACTGGAAGTGGGGGTCGAGACCTTAGTGGGAACAAGCGTACAAGCAAGGATCAGTCTTTTGACCAGAAATTTGAAAAATATAACAAAGCGCTACAAGTTAGTTGCTTGAAAGGTTATCCTGTTAGGGTTGTTAGATCTCACAAAGAAAAGCGTTCCTCATATGCTCCAGAGAAGGGATTGCGTTATGATGGAATTTATAGGATTGAGAAGTGTTGGCGTAAAGTGGGAATTCAGGGCTTTAAAGTATGTCGGTATTTATTTGTTAGATGCGACAATGATCCTGCTCCATGGACAAGCGATGAACATGGAGATCGACCTAGACCCTTACCATCAATTCCAGAGTTGAAAAAAGCGACAAATATTACGGAGAGGAAGGAAGGTCCATCATGGGACTTTGATGAGAAAGATAGCCGGTGGAAGTGGACCAAACCTCCCCCGACAAGCATGAGACCAGTTGAAACCGAAGATTCTGCCTCTGGGAAGAGGTCAAGGAGAAAAATTAGGCAATCTCATGACATGAACGTCCGAGAAAGGTTACTGAAAGAGTTTAGCTGCCTTATTTGTTGGGAGGTGATGAATCTGCCAATTACTACCCCATGTGCCCATAACTTCTGCAAATCATGCTTGGAAGGTGCTTTTGCGGGCAAGACATTCTTGAGAGAGAGAAGCAGTGGTGGACGGAGTCTTAGATCCCGAAAGAATGTCATGACTTGTCCTTGTTGTCCGACGGATATATCAGATTTTCTACAGAATCTTCAGGTAAGCTTGAAGAAGAAGGGGATGAAATCTGAAAAGCTTTGTGAAGAAGAGATAGATAGGGAAGAGGAGAATGAGGGAAAAGATGAAGTGGAAAAAAGAAAGCAAGCAAAGGTGGTGGTTAATGATGGGGAGGAAAAACCAGTCATTTGA 2187 43.94 MAQVSQLPCDGDGICMLCRANTSDMETITCKTCVTPWHVDCLSNPPETLACTLQWDCPDCSPPPEHASLPPPYNSSLPTLPSNDLIAAIRAIEADSSLTDGEKAKKRQELLTGKSRSDENDLKRKQGDDVLDLFDERLNCSFCIQLPDRPVIITYYPHGEESQLSFDQTLWIEKTTNSNGTLAEITKLENNGGLNKINNVGLNKIVLPIGKERKGWQAFYTLLNSYPLTATLTPVVDSVTADYFRDLVHLQTPCGHNFCLKCFQKWIGLGKNTCAKCRCVIPAKMASQPRINSTLVVAIRMAKLSKSFVSGGPQKAYHYVHNQNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPIPAKNDPERNQGVLVGECWEDRLECRQWGAHFPHIAGIAGQSNIGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKYNKALQVSCLKGYPVRVVRSHKEKRSSYAPEKGLRYDGIYRIEKCWRKVGIQGFKVCRYLFVRCDNDPAPWTSDEHGDRPRPLPSIPELKKATNITERKEGPSWDFDEKDSRWKWTKPPPTSMRPVETEDSASGKRSRRKIRQSHDMNVRERLLKEFSCLICWEVMNLPITTPCAHNFCKSCLEGAFAGKTFLRERSSGGRSLRSRKNVMTCPCCPTDISDFLQNLQVSLKKKGMKSEKLCEEEIDREEENEGKDEVEKRKQAKVVVNDGEEKPVI 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11230813 11241658 - CrPI670011_04g003650.1 Cre04g0365 494669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0365 728 SUPERFAMILY RING/U-box 604 672 - -
Cre04g0365 728 MobiDBLite consensus disorder prediction 523 594 - -
Cre04g0365 728 Pfam SAD/SRA domain 369 518 IPR003105 -
Cre04g0365 728 SUPERFAMILY RING/U-box 236 285 - -
Cre04g0365 728 Pfam Zinc finger, C3HC4 type (RING finger) 250 277 IPR018957 GO:0046872(InterPro)
Cre04g0365 728 ProSitePatterns Zinc finger PHD-type signature. 15 60 IPR019786 -
Cre04g0365 728 ProSiteProfiles Zinc finger PHD-type profile. 12 63 IPR019787 -
Cre04g0365 728 Pfam RING-type zinc-finger 611 642 IPR027370 -
Cre04g0365 728 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 71 IPR013083 -
Cre04g0365 728 SMART G9a_1 362 519 IPR003105 -
Cre04g0365 728 MobiDBLite consensus disorder prediction 692 728 - -
Cre04g0365 728 Gene3D - 338 534 IPR036987 -
Cre04g0365 728 MobiDBLite consensus disorder prediction 544 567 - -
Cre04g0365 728 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 331 IPR013083 -
Cre04g0365 728 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 598 721 IPR013083 -
Cre04g0365 728 MobiDBLite consensus disorder prediction 704 728 - -
Cre04g0365 728 SUPERFAMILY FYVE/PHD zinc finger 7 66 IPR011011 -
Cre04g0365 728 MobiDBLite consensus disorder prediction 523 537 - -
Cre04g0365 728 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 712 IPR045134 GO:0010216(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cre04g0365 728 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 338 533 - -
Cre04g0365 728 ProSitePatterns Zinc finger RING-type signature. 626 635 IPR017907 -
Cre04g0365 728 ProSiteProfiles YDG domain profile. 367 515 IPR003105 -
Cre04g0365 728 SUPERFAMILY PUA domain-like 341 538 IPR015947 -
Cre04g0365 728 SMART ring_2 250 277 IPR001841 -
Cre04g0365 728 SMART ring_2 611 667 IPR001841 -
Cre04g0365 728 MobiDBLite consensus disorder prediction 99 122 - -
Cre04g0365 728 ProSiteProfiles Zinc finger RING-type profile. 611 667 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0365 Cre-Chr4:11230813 Cre11g0567 Cre-Chr11:2722797 3.10E-303 dispersed
Cre06g2462 Cre-Chr6:32442417 Cre04g0365 Cre-Chr4:11230813 3.30E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0365 K10638 - csv:101220457 890.952