Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0452 ATGCCTACGACCATTTTGGGTGTTGGTCAAACTGTGGTTGGAGAAGCCTATAACCCTAAGAGTGCAGGGCCGAACTCTGGAGTGAGCAATAATAATAAAAATGATCAGAAGGGGTTGCCGTCGTGGCCGCCACGGACGGCAGAGAGTGAGATTATGATGAGAAAGAAGTCAACGGCGCCACCGTTTCTGTTGAAGACTTACAAGGTGGTGGAGGATCCGGCGACGGACGAGGTGATATCGTGGAACGACGACGGGACGGCGTTTGTGGTTTGGCAGACGGTGGAGTTTGCTAAAGATGTTTTGCCGAAGCTGTTTAAGCATTGCAATTTCTCTAGCTTTGTTCGTCAACTTAATACCTATGGATTTCGAAAGGTGACGACAACAAGGTGGGAGTTTTGCAACGACAAATTTCAAAAGGGTGAAAAGGAAAAGCTCTGCGAAATACGAAGAAGAAAGACATGTACCAACAAGCAACAACATGAGATTGATGAAGATCAAAGATCCTCCTCTTCGAACTCATCATCTTCACAATACAATACTCTAATGGATGAGAACAAGAGGTTGAAGAAGGAAAATGGAGCCTTAAGCTCAGAGCTTGTAAGCATGAAAAACAAGTGTAGAGAGCTTTTTGATTTGGTGGCTAAGTATGAAAATATTTCAAAGAAAGAAGAGGAAGATGAGAGGCCAAAGCTGTTTGGAGTAAGGTTGGAAGAAGGGGAGAGAGAGAGGAAGAGAAAAAGGGCAGAAGAGATTAGTGAAACTGCAACTTTTTTACTATCTCAATCATGCAAATGA 795 43.65 MPTTILGVGQTVVGEAYNPKSAGPNSGVSNNNKNDQKGLPSWPPRTAESEIMMRKKSTAPPFLLKTYKVVEDPATDEVISWNDDGTAFVVWQTVEFAKDVLPKLFKHCNFSSFVRQLNTYGFRKVTTTRWEFCNDKFQKGEKEKLCEIRRRKTCTNKQQHEIDEDQRSSSSNSSSSQYNTLMDENKRLKKENGALSSELVSMKNKCRELFDLVAKYENISKKEEEDERPKLFGVRLEEGERERKRKRAEEISETATFLLSQSCK 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16562941 16569418 - CrPI670011_04g004520.1 Cre04g0452 494756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0452 264 Coils Coil 178 205 - -
Cre04g0452 264 Pfam HSF-type DNA-binding 62 151 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g0452 264 MobiDBLite consensus disorder prediction 16 45 - -
Cre04g0452 264 MobiDBLite consensus disorder prediction 157 179 - -
Cre04g0452 264 MobiDBLite consensus disorder prediction 22 39 - -
Cre04g0452 264 Gene3D - 53 153 IPR036388 -
Cre04g0452 264 SMART hsfneu3 58 151 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g0452 264 FunFam Heat stress transcription factor B-4 54 152 - -
Cre04g0452 264 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 45 225 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cre04g0452 264 PRINTS Heat shock factor (HSF) domain signature 62 85 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g0452 264 PRINTS Heat shock factor (HSF) domain signature 113 125 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g0452 264 PRINTS Heat shock factor (HSF) domain signature 100 112 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g0452 264 SUPERFAMILY Winged helix DNA-binding domain 58 151 IPR036390 -
Cre04g0452 264 ProSitePatterns HSF-type DNA-binding domain signature. 101 125 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0452 K09419 - - csv:101214829 366.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0452 Cre-Chr4:16562941 Cre10g1708 Cre-Chr10:31288798 4.80E-60 dispersed
Cre04g0452 Cre-Chr4:16562941 Cre05g0981 Cre-Chr5:9052955 5.70E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1462 . Blo12g00576 . . . . . . . . Cma03g00056 . Car03g00046 . Sed02g0844 Cpe10g01200 . Bhi03g02582 Tan03g0376 Cmetu04g0111 . Hepe04g0401 . . Cla04g00354 Cam04g0366 Cec04g0460 Cco04g0481 Clacu04g0365 Cmu04g0415 Cre04g0452 Cone3ag0046 Cone10ag0035 . . . . . Cme04g02057 . . . . . . . . . Cmo03g00056 . . . . . . . Bhi11g02893 . . . . . . Cla10g01503 Cam10g1552 Cec10g1593 Cco10g1566 Clacu10g1561 Cmu10g2324 Cre10g1708 Lsi03g01558 Csa03g03764 Chy04g01608 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g0597 . 37 237 HSF AT4G17750 59.6 1.9e-62 237.3
Cre09g0695 . 57 297 HSF AT4G17750 51.4 1.8e-60 230.7
Cre08g1648 . 42 242 HSF AT4G17750 55.0 1.7e-58 224.2
Cre03g0980 . 13 192 HSF AT4G17750 50.8 7.0e-44 175.6
Cre08g1547 . 14 118 HSF AT4G17750 69.5 3.9e-39 159.8
Cre09g2219 . 368 490 HSF AT4G17750 61.8 3.9e-39 159.8
Cre05g2189 . 20 118 HSF AT4G17750 69.7 2.6e-38 157.1
Cre05g0597 . 38 242 HSF AT5G16820 57.0 5.1e-60 229.2
Cre07g0420 . 41 258 HSF AT5G16820 52.2 9.7e-59 224.9
Cre09g0695 . 58 269 HSF AT5G16820 54.2 2.4e-57 220.3
Cre08g1648 . 43 253 HSF AT5G16820 51.1 3.8e-55 213.0
Cre04g2010 . 40 222 HSF AT5G16820 50.3 5.7e-43 172.6
Cre06g1660 . 10 176 HSF AT5G16820 51.6 6.3e-42 169.1
Cre10g0400 . 13 515 HSF AT1G32330 53.0 3.1e-121 432.6
Cre05g0597 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cre09g0695 . 46 265 HSF AT1G32330 51.8 6.3e-58 222.2
Cre08g1648 . 31 223 HSF AT1G32330 54.6 3.8e-55 213.0
Cre08g1547 . 20 117 HSF AT1G32330 72.4 3.3e-38 156.8
Cre07g0420 . 41 262 HSF AT3G02990 52.2 9.1e-62 235.0
Cre05g0597 . 38 241 HSF AT3G02990 57.6 2.7e-61 233.4
Cre09g0695 . 58 280 HSF AT3G02990 52.2 1.2e-58 224.6
Cre08g1648 . 43 242 HSF AT3G02990 51.7 4.9e-55 212.6
Cre06g1660 . 10 172 HSF AT3G02990 50.3 4.0e-41 166.4
Cre05g0597 . 25 298 HSF AT2G26150 50.5 3.3e-69 259.2
Cre09g0695 . 46 264 HSF AT2G26150 54.5 2.5e-64 243.0
Cre10g0400 . 8 243 HSF AT2G26150 55.7 3.3e-61 232.6
Cre03g0980 . 5 156 HSF AT2G26150 52.0 1.1e-40 164.5
Cre02g2132 . 2 189 HSF AT4G18880 52.7 9.6e-52 201.4
Cre05g0397 . 6 353 HSF AT4G13980 56.9 1.6e-103 373.6
Cre05g0597 . 26 218 HSF AT5G43840 54.4 1.7e-55 213.4
Cre08g1648 . 31 234 HSF AT5G43840 50.5 1.2e-45 180.6
Cre09g0695 . 46 382 HSF AT3G22830 53.5 4.3e-92 335.5
Cre07g0420 . 16 350 HSF AT3G22830 50.9 2.1e-86 316.6
Cre08g1648 . 31 253 HSF AT3G22830 54.1 1.7e-64 243.8
Cre10g0400 . 29 242 HSF AT3G22830 58.9 1.2e-62 237.7
Cre09g0695 . 45 357 HSF AT3G51910 51.3 1.6e-71 266.5
Cre07g0420 . 26 322 HSF AT3G51910 52.5 2.0e-69 259.6
Cre08g1648 . 31 223 HSF AT3G51910 56.0 4.1e-54 208.8
Cre08g1648 . 31 230 HSF AT3G63350 52.5 2.8e-50 196.1
Cre02g2132 . 5 140 HSF AT3G63350 56.6 5.5e-38 155.2
Cre09g0695 . 59 251 HSF AT1G67970 50.3 4.0e-44 176.0
Cre04g1306 . 2 296 HSF AT4G36990 52.0 2.2e-71 266.2
Cre08g1547 . 17 115 HSF AT5G62020 67.7 2.0e-38 156.8
Cre09g2219 . 391 712 HSF AT4G11660 51.8 2.3e-79 293.1
Cre08g1547 . 16 121 HSF AT4G11660 71.7 4.1e-44 176.0
Cre04g1306 . 2 107 HSF AT4G11660 71.7 3.8e-42 169.5
Cre03g1504 . 20 119 HSF AT4G11660 68.0 1.1e-38 157.9
Cre10g0400 . 33 126 HSF AT4G11660 69.1 1.8e-36 150.6
Cre04g0452 . 30 237 HSF AT2G41690 53.7 1.6e-49 193.4
Cre10g1708 . 14 222 HSF AT2G41690 55.3 1.1e-47 187.2
Cre08g1547 . 9 373 HSF AT1G46264 52.2 8.5e-89 324.3
Cre05g2189 . 1 238 HSF AT1G46264 63.8 2.2e-81 299.7
Cre03g1504 . 19 200 HSF AT1G46264 51.9 3.2e-51 199.5
Cre10g0400 . 33 138 HSF AT1G46264 73.6 3.9e-41 166.0
Cre10g1708 . 21 118 HSF AT1G46264 69.4 5.8e-37 152.1
Cre02g2132 . 5 105 HSF AT1G46264 67.3 7.6e-37 151.8
Cre05g0597 . 37 237 HSF AT4G17750 59.6 1.9e-62 237.3
Cre09g0695 . 57 297 HSF AT4G17750 51.4 1.8e-60 230.7
Cre08g1648 . 42 242 HSF AT4G17750 55.0 1.7e-58 224.2
Cre03g0980 . 13 192 HSF AT4G17750 50.8 7.0e-44 175.6
Cre08g1547 . 14 118 HSF AT4G17750 69.5 3.9e-39 159.8
Cre09g2219 . 368 490 HSF AT4G17750 61.8 3.9e-39 159.8
Cre05g2189 . 20 118 HSF AT4G17750 69.7 2.6e-38 157.1
Cre05g0597 . 38 242 HSF AT5G16820 57.0 5.1e-60 229.2
Cre07g0420 . 41 258 HSF AT5G16820 52.2 9.7e-59 224.9
Cre09g0695 . 58 269 HSF AT5G16820 54.2 2.4e-57 220.3
Cre08g1648 . 43 253 HSF AT5G16820 51.1 3.8e-55 213.0
Cre04g2010 . 40 222 HSF AT5G16820 50.3 5.7e-43 172.6
Cre06g1660 . 10 176 HSF AT5G16820 51.6 6.3e-42 169.1
Cre10g0400 . 13 515 HSF AT1G32330 53.0 3.1e-121 432.6
Cre05g0597 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cre09g0695 . 46 265 HSF AT1G32330 51.8 6.3e-58 222.2
Cre08g1648 . 31 223 HSF AT1G32330 54.6 3.8e-55 213.0
Cre08g1547 . 20 117 HSF AT1G32330 72.4 3.3e-38 156.8
Cre07g0420 . 41 262 HSF AT3G02990 52.2 9.1e-62 235.0
Cre05g0597 . 38 241 HSF AT3G02990 57.6 2.7e-61 233.4
Cre09g0695 . 58 280 HSF AT3G02990 52.2 1.2e-58 224.6
Cre08g1648 . 43 242 HSF AT3G02990 51.7 4.9e-55 212.6
Cre06g1660 . 10 172 HSF AT3G02990 50.3 4.0e-41 166.4
Cre05g0597 . 25 298 HSF AT2G26150 50.5 3.3e-69 259.2
Cre09g0695 . 46 264 HSF AT2G26150 54.5 2.5e-64 243.0
Cre10g0400 . 8 243 HSF AT2G26150 55.7 3.3e-61 232.6
Cre03g0980 . 5 156 HSF AT2G26150 52.0 1.1e-40 164.5
Cre02g2132 . 2 189 HSF AT4G18880 52.7 9.6e-52 201.4
Cre05g0397 . 6 353 HSF AT4G13980 56.9 1.6e-103 373.6
Cre05g0597 . 26 218 HSF AT5G43840 54.4 1.7e-55 213.4
Cre08g1648 . 31 234 HSF AT5G43840 50.5 1.2e-45 180.6
Cre09g0695 . 46 382 HSF AT3G22830 53.5 4.3e-92 335.5
Cre07g0420 . 16 350 HSF AT3G22830 50.9 2.1e-86 316.6
Cre08g1648 . 31 253 HSF AT3G22830 54.1 1.7e-64 243.8
Cre10g0400 . 29 242 HSF AT3G22830 58.9 1.2e-62 237.7
Cre09g0695 . 45 357 HSF AT3G51910 51.3 1.6e-71 266.5
Cre07g0420 . 26 322 HSF AT3G51910 52.5 2.0e-69 259.6
Cre08g1648 . 31 223 HSF AT3G51910 56.0 4.1e-54 208.8
Cre08g1648 . 31 230 HSF AT3G63350 52.5 2.8e-50 196.1
Cre02g2132 . 5 140 HSF AT3G63350 56.6 5.5e-38 155.2
Cre09g0695 . 59 251 HSF AT1G67970 50.3 4.0e-44 176.0
Cre04g1306 . 2 296 HSF AT4G36990 52.0 2.2e-71 266.2
Cre08g1547 . 17 115 HSF AT5G62020 67.7 2.0e-38 156.8
Cre09g2219 . 391 712 HSF AT4G11660 51.8 2.3e-79 293.1
Cre08g1547 . 16 121 HSF AT4G11660 71.7 4.1e-44 176.0
Cre04g1306 . 2 107 HSF AT4G11660 71.7 3.8e-42 169.5
Cre03g1504 . 20 119 HSF AT4G11660 68.0 1.1e-38 157.9
Cre10g0400 . 33 126 HSF AT4G11660 69.1 1.8e-36 150.6
Cre04g0452 . 30 237 HSF AT2G41690 53.7 1.6e-49 193.4
Cre10g1708 . 14 222 HSF AT2G41690 55.3 1.1e-47 187.2
Cre08g1547 . 9 373 HSF AT1G46264 52.2 8.5e-89 324.3
Cre05g2189 . 1 238 HSF AT1G46264 63.8 2.2e-81 299.7
Cre03g1504 . 19 200 HSF AT1G46264 51.9 3.2e-51 199.5
Cre10g0400 . 33 138 HSF AT1G46264 73.6 3.9e-41 166.0
Cre10g1708 . 21 118 HSF AT1G46264 69.4 5.8e-37 152.1
Cre02g2132 . 5 105 HSF AT1G46264 67.3 7.6e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003188 2 2 1 0 0 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 1 2 2 2 3 1 1 2 1 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53396 PF00447 HSF_DNA-bind 2.90E-32 CL0123 Cre TF