Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0461 ATGGGAAGAGGAAGAGTCGAGATCAAGAAGATTGAGAATATCAACAGCAGACAAGTTACTTTCTCTAAACGCCGTAATGGGTTGATGAAAAAGGCCAAAGAATTATCAGTTCTTTGTGATGCTGAAGTCGCCATTGTTGTCTTCTCCAGCACTGGAAGGCTTTATGAATTCTCCAGCACTAGCATGGAACATACACTTTCAAGGTACAGAGGACAGGGCATGGAGTTGGATTTTCCAAAAGAGACTTTGGACCACCCAACACAACTGCCACCATCTGATTCTGATGCAAAGTCGTCCGAGGAGGAGATCGCAAGGCTAAAGTTAGCATATATGCAGATGAGAGGCCAGGAACTGGATAGTTTGAGCTTTATAGACCTACAAAACTTAGAAAATCAGTTGCGGGAAGGGATCATATCTATCAAAGACAAGAAGGAGACATTACTTTTGGAGCAGCTCCAAAGGTGTAGGTCACAGCTAGAGGAGTTTCAGCAGAGAAACAATGCAACACTCCTGGAGTCCAGCCCCCTTCAGAGATCCTACTTTTCGGATTCGAAAACCGCTTCTACGAACGAGACTGAGGCCGAGACCGAGGCAGAGGAAAATGACCCCTCAGAAATTTCCTTGCATCTGGGGTTGTCATTGGATGGTCGACAAAAAAGGAAACGATCGGTTGAAGGTGCGAGCAACGACACAACATGCAGTCAAGTAGACTTGGGAAGGGGATGA 726 45.73 MGRGRVEIKKIENINSRQVTFSKRRNGLMKKAKELSVLCDAEVAIVVFSSTGRLYEFSSTSMEHTLSRYRGQGMELDFPKETLDHPTQLPPSDSDAKSSEEEIARLKLAYMQMRGQELDSLSFIDLQNLENQLREGIISIKDKKETLLLEQLQRCRSQLEEFQQRNNATLLESSPLQRSYFSDSKTASTNETEAETEAEENDPSEISLHLGLSLDGRQKRKRSVEGASNDTTCSQVDLGRG 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17708323 17711916 - CrPI670011_04g004610.1 Cre04g0461 494765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0461 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g0461 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g0461 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g0461 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 190 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre04g0461 241 MobiDBLite consensus disorder prediction 173 241 - -
Cre04g0461 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g0461 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g0461 241 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cre04g0461 241 SUPERFAMILY SRF-like 2 71 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g0461 241 Coils Coil 96 116 - -
Cre04g0461 241 Pfam K-box region 100 167 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre04g0461 241 MobiDBLite consensus disorder prediction 173 191 - -
Cre04g0461 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g0461 241 MobiDBLite consensus disorder prediction 81 100 - -
Cre04g0461 241 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g0461 241 FunFam MADS-box transcription factor MADS-MC 13 82 - -
Cre04g0461 241 Coils Coil 126 172 - -
Cre04g0461 241 Gene3D - 13 79 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g0461 241 MobiDBLite consensus disorder prediction 227 241 - -
Cre04g0461 241 ProSiteProfiles K-box domain profile. 89 180 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1549 Cre-Chr1:28671527 Cre04g0461 Cre-Chr4:17708323 9.80E-13 dispersed
Cre04g0461 Cre-Chr4:17708323 Cre10g1367 Cre-Chr10:27326804 1.70E-35 dispersed
Cre04g0461 Cre-Chr4:17708323 Cre04g2020 Cre-Chr4:37497982 7.30E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53397 PF01486 K-box 6.10E-11 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0461 - - - 0.0