Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0540 ATGGGTTCTTCTGTTGCTGCAATGGGCATGGTTTCAGACTCCAAATTCCATGTTCTTGCTGTTGATGATAGCGTTATCGATAGGAAATTGATTGAAAGGCTCCTTAAAACCTCCTCTTACCAAGTCACTACGGTTGATTCTGGAAGTAAAGCTTTGGAGTTTCTGGGATATGACCCCGGAAATAACTCGATTCCTTCTGTTTCATCTAACCATCATCATCATCATCAGGAAGTGGATGTGAATCTTGTTATTACTGATTACTGTATGCCTGAGATGACTGGCTATGATTTGTTGAAGAAGATCAAGGGGTCTACAGCTCTGAGAAACATACCTGTTGTGATTATGTCATCTGAGAATGTGCCTGCAAGAATCAATAGATGCTTAGAAGAAGGAGCAGAAGAATTCTTCTTGAAACCGGTCCGACTTTCGGATGTCAACCGGCTTAGACCCCACATGTTGAAAACCAAACTCAAATGTGACAAACCAGAAAAAGCAGTAGAAAATGAGCCTGATTCAGGAAGCCAATCCCCAGCACTAGGGCAACAACATCAACAACAACATGAACAAGAACAATTACGACCGCTATCGCAGCAGATCCCGACATCGCTGCAAGATCAAGATCAATTGCAATCTGTACCACTTCTGCCAACACCAACACAGGAGCAAGAACAGTTGCAATTACTCCCGCCAACACCGCCGCAACAATCAAACAACAACAAGAGGAAGGCAATGGAAGATGGACTTTCTCCCGATAGAACAAGGCCTAGATACAATGGTATTACCACCATGGTGTAG 795 43.4 MGSSVAAMGMVSDSKFHVLAVDDSVIDRKLIERLLKTSSYQVTTVDSGSKALEFLGYDPGNNSIPSVSSNHHHHHQEVDVNLVITDYCMPEMTGYDLLKKIKGSTALRNIPVVIMSSENVPARINRCLEEGAEEFFLKPVRLSDVNRLRPHMLKTKLKCDKPEKAVENEPDSGSQSPALGQQHQQQHEQEQLRPLSQQIPTSLQDQDQLQSVPLLPTPTQEQEQLQLLPPTPPQQSNNNKRKAMEDGLSPDRTRPRYNGITTMV 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21041581 21043041 - CrPI670011_04g005400.1 Cre04g0540 494844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0540 264 MobiDBLite consensus disorder prediction 156 192 - -
Cre04g0540 264 SUPERFAMILY CheY-like 14 149 IPR011006 -
Cre04g0540 264 CDD REC_typeA_ARR 18 148 - -
Cre04g0540 264 ProSiteProfiles Response regulatory domain profile. 17 153 IPR001789 GO:0000160(InterPro)
Cre04g0540 264 MobiDBLite consensus disorder prediction 215 243 - -
Cre04g0540 264 Gene3D - 17 249 - -
Cre04g0540 264 SMART REC_2 16 149 IPR001789 GO:0000160(InterPro)
Cre04g0540 264 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 210 IPR045279 GO:0009736(InterPro)
Cre04g0540 264 MobiDBLite consensus disorder prediction 215 264 - -
Cre04g0540 264 MobiDBLite consensus disorder prediction 169 192 - -
Cre04g0540 264 Pfam Response regulator receiver domain 18 144 IPR001789 GO:0000160(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0540 K14492 - - csv:101220999 436.417
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0540 Cre-Chr4:21041581 Cre10g1736 Cre-Chr10:31659739 6.10E-55 dispersed
Cre04g0540 Cre-Chr4:21041581 Cre06g2534 Cre-Chr6:32991425 1.30E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1179 . . . Bda03g00627 Bpe04g01386 . Bma04g01468 Bma10g00231 . . Cma03g00130 Cma07g01364 Car03g00131 Car07g01312 Sed14g0018 . . Bhi03g02471 Tan03g0466 Cmetu08g0497 . Hepe04g0485 . . Cla04g00444 Cam04g0440 Cec04g0555 Cco04g0576 Clacu04g0453 Cmu04g0488 Cre04g0540 Cone3ag0023 . Cone13ag0617 Cone19ag0548 Lsi01g01790 Csa04g01951 . Cme04g02093 . . . . Bpe04g00591 . . . Sed02g0819 Cmo03g00167 Cmo07g01403 . . . Car14g00475 Cpe03g00456 . Bhi11g02832 Tan08g1252 Cmetu04g1441 . Hepe05g0710 . . Cla10g01535 Cam10g1583 Cec10g1628 Cco10g1598 Clacu10g1595 Cmu10g2355 Cre10g1736 Lsi03g01597 Csa03g03727 . Cme08g01358
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g1683 . 256 460 Response Regulator Gene Family AT3G16857 53.8 2.4e-54 210.7
Cre11g0834 . 416 743 Response Regulator Gene Family AT4G31920 51.2 8.8e-80 295.0
Cre06g1238 . 29 284 Response Regulator Gene Family AT4G31920 55.5 1.1e-71 268.1
Cre05g0777 . 16 271 Response Regulator Gene Family AT4G31920 54.1 1.1e-69 261.5
Cre08g1683 . 215 463 Response Regulator Gene Family AT4G31920 50.4 4.8e-62 236.1
Cre05g0777 . 99 286 Response Regulator Gene Family AT1G67710 50.3 1.9e-40 164.1
Cre05g1811 . 93 255 Response Regulator Gene Family AT1G67710 53.8 3.2e-40 163.3
Cre06g2086 . 99 269 Response Regulator Gene Family AT1G67710 50.8 2.0e-37 154.1
Cre06g2086 . 16 390 Response Regulator Gene Family AT2G25180 56.2 3.6e-103 372.9
Cre05g0777 . 18 291 Response Regulator Gene Family AT2G25180 55.9 1.5e-77 287.7
Cre08g1683 . 215 460 Response Regulator Gene Family AT2G25180 55.6 9.8e-69 258.5
Cre06g1238 . 92 325 Response Regulator Gene Family AT2G01760 51.4 8.1e-54 208.0
Cre06g2086 . 79 303 Response Regulator Gene Family AT2G01760 52.4 1.6e-49 193.7
Cre08g1683 . 276 463 Response Regulator Gene Family AT2G01760 51.0 3.9e-48 189.1
Cre08g1683 . 213 462 Response Regulator Gene Family AT5G58080 50.6 7.3e-62 235.7
Cre06g1238 . 30 255 Response Regulator Gene Family AT4G16110 66.7 2.3e-79 293.9
Cre05g0777 . 18 242 Response Regulator Gene Family AT4G16110 67.0 8.9e-79 292.0
Cre05g1811 . 12 233 Response Regulator Gene Family AT4G16110 60.2 2.2e-61 234.2
Cre08g1683 . 214 439 Response Regulator Gene Family AT4G16110 54.5 1.0e-58 225.3
Cre06g2086 . 17 249 Response Regulator Gene Family AT4G16110 53.0 9.6e-57 218.8
Cre11g0834 . 421 669 Response Regulator Gene Family AT4G16110 51.7 1.9e-52 204.5
Cre06g2534 . 16 177 Response Regulator Gene Family AT3G48100 69.3 1.4e-53 206.5
Cre05g2664 . 29 162 Response Regulator Gene Family AT3G48100 71.6 3.2e-50 195.3
Cre09g1785 . 11 152 Response Regulator Gene Family AT3G48100 60.6 4.6e-41 164.9
Cre04g0540 . 10 156 Response Regulator Gene Family AT3G48100 57.1 2.3e-40 162.5
Cre05g2843 . 4 170 Response Regulator Gene Family AT3G48100 52.7 2.5e-39 159.1
Cre10g1736 . 3 156 Response Regulator Gene Family AT3G48100 52.6 2.8e-38 155.6
Cre07g0902 . 21 152 Response Regulator Gene Family AT3G48100 56.8 8.9e-37 150.6
Cre05g2664 . 1 201 Response Regulator Gene Family AT1G59940 60.0 4.4e-55 212.2
Cre06g2534 . 32 177 Response Regulator Gene Family AT1G59940 66.4 5.7e-47 185.3
Cre10g1736 . 5 154 Response Regulator Gene Family AT1G59940 56.7 2.3e-40 163.3
Cre09g1785 . 5 153 Response Regulator Gene Family AT1G59940 58.4 4.0e-40 162.5
Cre04g0540 . 11 154 Response Regulator Gene Family AT1G59940 56.3 9.8e-39 157.9
Cre05g2843 . 11 156 Response Regulator Gene Family AT1G59940 58.2 1.3e-38 157.5
Cre07g0902 . 16 151 Response Regulator Gene Family AT1G59940 60.3 4.9e-38 155.6
Cre05g2664 . 28 185 Response Regulator Gene Family AT1G10470 71.5 8.2e-54 207.6
Cre06g2534 . 32 161 Response Regulator Gene Family AT1G10470 72.3 2.8e-46 182.6
Cre10g1736 . 5 162 Response Regulator Gene Family AT1G10470 54.4 6.7e-40 161.4
Cre09g1785 . 5 158 Response Regulator Gene Family AT1G10470 57.1 3.3e-39 159.1
Cre04g0540 . 17 154 Response Regulator Gene Family AT1G10470 59.4 2.8e-38 156.0
Cre05g2843 . 11 178 Response Regulator Gene Family AT1G10470 51.2 1.4e-37 153.7
Cre07g0902 . 21 151 Response Regulator Gene Family AT1G10470 61.1 1.8e-37 153.3
Cre06g2534 . 16 177 Response Regulator Gene Family AT3G48100 69.3 1.4e-53 206.5
Cre05g2664 . 29 162 Response Regulator Gene Family AT3G48100 71.6 3.2e-50 195.3
Cre09g1785 . 11 152 Response Regulator Gene Family AT3G48100 60.6 4.6e-41 164.9
Cre04g0540 . 10 156 Response Regulator Gene Family AT3G48100 57.1 2.3e-40 162.5
Cre05g2843 . 4 170 Response Regulator Gene Family AT3G48100 52.7 2.5e-39 159.1
Cre10g1736 . 3 156 Response Regulator Gene Family AT3G48100 52.6 2.8e-38 155.6
Cre07g0902 . 21 152 Response Regulator Gene Family AT3G48100 56.8 8.9e-37 150.6
Cre06g2534 . 28 166 Response Regulator Gene Family AT5G62920 74.8 1.1e-50 196.8
Cre05g2664 . 25 175 Response Regulator Gene Family AT5G62920 66.9 1.0e-48 190.3
Cre09g1785 . 11 152 Response Regulator Gene Family AT5G62920 60.6 3.9e-40 161.8
Cre04g0540 . 12 156 Response Regulator Gene Family AT5G62920 57.2 1.1e-39 160.2
Cre10g1736 . 10 156 Response Regulator Gene Family AT5G62920 55.1 7.4e-39 157.5
Cre05g2843 . 11 173 Response Regulator Gene Family AT5G62920 51.2 2.4e-37 152.5
Cre06g2534 . 32 182 Response Regulator Gene Family AT1G19050 71.4 7.1e-51 197.6
Cre05g2664 . 23 185 Response Regulator Gene Family AT1G19050 58.5 7.6e-45 177.6
Cre04g0540 . 11 156 Response Regulator Gene Family AT1G19050 54.8 3.1e-38 155.6
Cre05g2843 . 8 161 Response Regulator Gene Family AT1G19050 53.2 3.1e-38 155.6
Cre10g1736 . 8 156 Response Regulator Gene Family AT1G19050 53.0 9.0e-38 154.1
Cre07g0902 . 21 152 Response Regulator Gene Family AT1G19050 60.6 2.0e-37 152.9
Cre09g1785 . 7 155 Response Regulator Gene Family AT1G19050 53.0 3.4e-37 152.1
Cre04g0540 . 8 264 Response Regulator Gene Family AT2G41310 53.1 2.4e-60 229.2
Cre10g1736 . 1 157 Response Regulator Gene Family AT2G41310 71.3 2.0e-54 209.5
Cre09g1785 . 1 154 Response Regulator Gene Family AT2G41310 63.9 1.4e-47 186.8
Cre08g0534 . 7 158 Response Regulator Gene Family AT2G41310 59.1 1.0e-42 170.6
Cre05g2664 . 25 158 Response Regulator Gene Family AT2G41310 59.2 1.9e-41 166.4
Cre06g2534 . 29 162 Response Regulator Gene Family AT2G41310 61.0 1.9e-41 166.4
Cre07g0902 . 15 152 Response Regulator Gene Family AT2G41310 55.6 6.2e-40 161.4
Cre04g0540 . 8 264 Response Regulator Gene Family AT3G57040 53.1 1.9e-63 239.6
Cre10g1736 . 1 157 Response Regulator Gene Family AT3G57040 73.9 6.4e-56 214.5
Cre05g2843 . 4 160 Response Regulator Gene Family AT3G57040 64.8 2.0e-49 193.0
Cre09g1785 . 8 154 Response Regulator Gene Family AT3G57040 66.7 2.6e-49 192.6
Cre08g0534 . 11 174 Response Regulator Gene Family AT3G57040 56.4 2.1e-43 172.9
Cre05g2664 . 25 158 Response Regulator Gene Family AT3G57040 59.4 2.8e-43 172.6
Cre06g2534 . 28 171 Response Regulator Gene Family AT3G57040 58.2 1.2e-41 167.2
Cre07g0902 . 18 152 Response Regulator Gene Family AT3G57040 56.7 4.2e-39 158.7
Cre06g2534 . 26 188 Response Regulator Gene Family AT1G74890 70.3 2.6e-53 205.7
Cre05g2664 . 25 187 Response Regulator Gene Family AT1G74890 61.2 6.2e-47 184.5
Cre05g2843 . 5 161 Response Regulator Gene Family AT1G74890 55.4 2.2e-39 159.5
Cre04g0540 . 12 172 Response Regulator Gene Family AT1G74890 52.1 2.8e-39 159.1
Cre09g1785 . 11 147 Response Regulator Gene Family AT1G74890 58.4 1.4e-38 156.8
Cre10g1736 . 8 154 Response Regulator Gene Family AT1G74890 54.4 2.4e-38 156.0
Cre07g0902 . 21 148 Response Regulator Gene Family AT1G74890 60.2 5.9e-37 151.4
Cre07g0902 . 21 153 Response Regulator Gene Family AT2G40670 70.1 2.2e-47 185.7
Cre05g2664 . 26 159 Response Regulator Gene Family AT2G40670 56.9 4.5e-40 161.4
Cre10g1736 . 6 156 Response Regulator Gene Family AT2G40670 54.6 7.7e-40 160.6
Cre06g2534 . 32 163 Response Regulator Gene Family AT2G40670 60.0 3.3e-38 155.2
Cre04g0540 . 13 156 Response Regulator Gene Family AT2G40670 51.7 8.0e-37 150.6
Cre07g0902 . 21 153 Response Regulator Gene Family AT3G56380 70.9 9.4e-48 186.8
Cre06g2534 . 18 163 Response Regulator Gene Family AT3G56380 57.8 3.2e-40 161.8
Cre05g2664 . 23 159 Response Regulator Gene Family AT3G56380 52.9 4.2e-40 161.4
Cre10g1736 . 6 156 Response Regulator Gene Family AT3G56380 52.6 1.0e-38 156.8
Cre09g1785 . 11 155 Response Regulator Gene Family AT3G56380 54.8 6.8e-38 154.1
Cre08g1683 . 256 460 Response Regulator Gene Family AT3G16857 53.8 2.4e-54 210.7
Cre06g1238 . 30 255 Response Regulator Gene Family AT4G16110 66.7 2.3e-79 293.9
Cre05g0777 . 18 242 Response Regulator Gene Family AT4G16110 67.0 8.9e-79 292.0
Cre05g1811 . 12 233 Response Regulator Gene Family AT4G16110 60.2 2.2e-61 234.2
Cre08g1683 . 214 439 Response Regulator Gene Family AT4G16110 54.5 1.0e-58 225.3
Cre06g2086 . 17 249 Response Regulator Gene Family AT4G16110 53.0 9.6e-57 218.8
Cre11g0834 . 421 669 Response Regulator Gene Family AT4G16110 51.7 1.9e-52 204.5
Cre11g0834 . 416 743 Response Regulator Gene Family AT4G31920 51.2 8.8e-80 295.0
Cre06g1238 . 29 284 Response Regulator Gene Family AT4G31920 55.5 1.1e-71 268.1
Cre05g0777 . 16 271 Response Regulator Gene Family AT4G31920 54.1 1.1e-69 261.5
Cre08g1683 . 215 463 Response Regulator Gene Family AT4G31920 50.4 4.8e-62 236.1
Cre05g0777 . 99 286 Response Regulator Gene Family AT1G67710 50.3 1.9e-40 164.1
Cre05g1811 . 93 255 Response Regulator Gene Family AT1G67710 53.8 3.2e-40 163.3
Cre06g2086 . 99 269 Response Regulator Gene Family AT1G67710 50.8 2.0e-37 154.1
Cre06g2086 . 16 390 Response Regulator Gene Family AT2G25180 56.2 3.6e-103 372.9
Cre05g0777 . 18 291 Response Regulator Gene Family AT2G25180 55.9 1.5e-77 287.7
Cre08g1683 . 215 460 Response Regulator Gene Family AT2G25180 55.6 9.8e-69 258.5
Cre06g1238 . 92 325 Response Regulator Gene Family AT2G01760 51.4 8.1e-54 208.0
Cre06g2086 . 79 303 Response Regulator Gene Family AT2G01760 52.4 1.6e-49 193.7
Cre08g1683 . 276 463 Response Regulator Gene Family AT2G01760 51.0 3.9e-48 189.1
Cre08g1683 . 213 462 Response Regulator Gene Family AT5G58080 50.6 7.3e-62 235.7
Cre01g1541 . 598 1143 Response Regulator Gene Family AT5G61380 50.5 1.3e-140 497.3
Cre04g0965 . 38 205 Response Regulator Gene Family AT5G60100 68.6 3.6e-54 209.5
Cre09g2496 . 53 185 Response Regulator Gene Family AT5G60100 62.4 6.8e-45 178.7
Cre04g0965 . 67 205 Response Regulator Gene Family AT5G24470 55.4 3.8e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000219 2 6 2 4 4 5 9 5 5 3 5 5 8 5 5 8 5 6 7 5 5 5 6 6 6 5 4 13 7 2 163
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53401 PF00072 Response_reg 1.30E-18 CL0304 Cre TR