Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0540 ATGGGTTCTTCTGTTGCTGCAATGGGCATGGTTTCAGACTCCAAATTCCATGTTCTTGCTGTTGATGATAGCGTTATCGATAGGAAATTGATTGAAAGGCTCCTTAAAACCTCCTCTTACCAAGTCACTACGGTTGATTCTGGAAGTAAAGCTTTGGAGTTTCTGGGATATGACCCCGGAAATAACTCGATTCCTTCTGTTTCATCTAACCATCATCATCATCATCAGGAAGTGGATGTGAATCTTGTTATTACTGATTACTGTATGCCTGAGATGACTGGCTATGATTTGTTGAAGAAGATCAAGGGGTCTACAGCTCTGAGAAACATACCTGTTGTGATTATGTCATCTGAGAATGTGCCTGCAAGAATCAATAGATGCTTAGAAGAAGGAGCAGAAGAATTCTTCTTGAAACCGGTCCGACTTTCGGATGTCAACCGGCTTAGACCCCACATGTTGAAAACCAAACTCAAATGTGACAAACCAGAAAAAGCAGTAGAAAATGAGCCTGATTCAGGAAGCCAATCCCCAGCACTAGGGCAACAACATCAACAACAACATGAACAAGAACAATTACGACCGCTATCGCAGCAGATCCCGACATCGCTGCAAGATCAAGATCAATTGCAATCTGTACCACTTCTGCCAACACCAACACAGGAGCAAGAACAGTTGCAATTACTCCCGCCAACACCGCCGCAACAATCAAACAACAACAAGAGGAAGGCAATGGAAGATGGACTTTCTCCCGATAGAACAAGGCCTAGATACAATGGTATTACCACCATGGTGTAG 795 43.4 MGSSVAAMGMVSDSKFHVLAVDDSVIDRKLIERLLKTSSYQVTTVDSGSKALEFLGYDPGNNSIPSVSSNHHHHHQEVDVNLVITDYCMPEMTGYDLLKKIKGSTALRNIPVVIMSSENVPARINRCLEEGAEEFFLKPVRLSDVNRLRPHMLKTKLKCDKPEKAVENEPDSGSQSPALGQQHQQQHEQEQLRPLSQQIPTSLQDQDQLQSVPLLPTPTQEQEQLQLLPPTPPQQSNNNKRKAMEDGLSPDRTRPRYNGITTMV 264
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 21041581 21043041 - CrPI670011_04g005400.1 Cre04g0540 494844
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0540 264 MobiDBLite consensus disorder prediction 156 192 - -
Cre04g0540 264 SUPERFAMILY CheY-like 14 149 IPR011006 -
Cre04g0540 264 CDD REC_typeA_ARR 18 148 - -
Cre04g0540 264 ProSiteProfiles Response regulatory domain profile. 17 153 IPR001789 GO:0000160(InterPro)
Cre04g0540 264 MobiDBLite consensus disorder prediction 215 243 - -
Cre04g0540 264 Gene3D - 17 249 - -
Cre04g0540 264 SMART REC_2 16 149 IPR001789 GO:0000160(InterPro)
Cre04g0540 264 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 210 IPR045279 GO:0009736(InterPro)
Cre04g0540 264 MobiDBLite consensus disorder prediction 215 264 - -
Cre04g0540 264 MobiDBLite consensus disorder prediction 169 192 - -
Cre04g0540 264 Pfam Response regulator receiver domain 18 144 IPR001789 GO:0000160(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0540 Cre-Chr4:21041581 Cre10g1736 Cre-Chr10:31659739 6.10E-55 dispersed
Cre04g0540 Cre-Chr4:21041581 Cre06g2534 Cre-Chr6:32991425 1.30E-41 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53401 PF00072 Response_reg 1.30E-18 CL0304 Cre TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0540 K14492 - csv:101220999 436.417