Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0607 ATGGACTTCTTACAGTCTCTGGATCCTCAAATCCTTCTAGGTTTGGCTGTGGCTGTTTTAGCCCTTGCCGTTGGTGCTTTCTATGTATTATCCTCGTCCAAAAAAAGCAAATCCAGAGGTTGCTTGGATCCAGAGGTTTTCAAGGAGTTTAAACTTGTCAAGCGCCTGCAGCTGAGCCATAATGTGGCGAAGTTTACATTTACACTCCCGAATCCTACTTCAGTTCTAGGTCTTCCCATTGGACAACATATAAGTTGCAGGGGCAAGGATGGCCAAGGTGAAGAGGTTATCAAACCGTACACACCTATTACTTTGGATTCTGATGTTGGATATTTTGAATTGGTCATAAAGATGTATCCTCAAGGAAGGATGTCACACCATTTCCGCCAGATGCGTGTAGGCGATTTTCTTGCTGTAAAGGGGCCCAAGGGGCGTTTCAGGTATCAACCCGGCGAGGTCAGAGCATTTGGGATGCTTGCTGGAGGCTCTGGCATTACGCCTATGTATCAAGTTGCTCGAGCAATATTAGAAAATCCAAATGACAAGACGAAGGTACATCTCATTTATGCCAATGTCACCTATGAGGACATTCTCTTAAAGGAGGAGTTGGATCTTCTTACCAAAAGGTACCCGGATAGCTTCAAGCTCTATTATGTCTTAAACCAGCCTCCTGAAGCGTGGGATGGTGGCGTCGGATTCGTATCGAAGGAGATGATTCAAGCCCACTGCCCTGCTCCTGCTTCTGATATTCAGATTCTAAGGTGTGGGCCACCACCAATGAACAAGGCCATGGCTGCTCATCTTGAAGATCTTGGATATACACCTGAGATGCTGTTCATGTTCTGA 846 45.86 MDFLQSLDPQILLGLAVAVLALAVGAFYVLSSSKKSKSRGCLDPEVFKEFKLVKRLQLSHNVAKFTFTLPNPTSVLGLPIGQHISCRGKDGQGEEVIKPYTPITLDSDVGYFELVIKMYPQGRMSHHFRQMRVGDFLAVKGPKGRFRYQPGEVRAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTYEDILLKEELDLLTKRYPDSFKLYYVLNQPPEAWDGGVGFVSKEMIQAHCPAPASDIQILRCGPPPMNKAMAAHLEDLGYTPEMLFMF 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23386556 23391889 + CrPI670011_04g006070.1 Cre04g0607 494911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0607 281 Gene3D - 140 281 IPR039261 -
Cre04g0607 281 PRINTS Cytochrome B5 reductase signature 157 176 - -
Cre04g0607 281 PRINTS Cytochrome B5 reductase signature 251 259 - -
Cre04g0607 281 PRINTS Cytochrome B5 reductase signature 134 148 - -
Cre04g0607 281 PRINTS Cytochrome B5 reductase signature 76 87 - -
Cre04g0607 281 PRINTS Cytochrome B5 reductase signature 98 105 - -
Cre04g0607 281 PRINTS Cytochrome B5 reductase signature 195 206 - -
Cre04g0607 281 FunFam NADH-cytochrome b5 reductase 139 281 - -
Cre04g0607 281 Pfam Oxidoreductase FAD-binding domain 50 148 IPR008333 -
Cre04g0607 281 Pfam Oxidoreductase NAD-binding domain 158 264 IPR001433 GO:0016491(InterPro)
Cre04g0607 281 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 137 278 IPR039261 -
Cre04g0607 281 SUPERFAMILY Riboflavin synthase domain-like 42 150 IPR017938 -
Cre04g0607 281 PANTHER NADH-CYTOCHROME B5 REDUCTASE 19 281 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Cre04g0607 281 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 45 149 IPR017927 GO:0016491(InterPro)
Cre04g0607 281 FunFam NADH-cytochrome b5 reductase 40 139 - -
Cre04g0607 281 Gene3D Translation factors 40 139 - -
Cre04g0607 281 CDD cyt_b5_reduct_like 50 281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0607 K00326 - - csv:101212569 529.635
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2727 Cre-Chr2:40403098 Cre04g0607 Cre-Chr4:23386556 1.10E-118 dispersed
Cre04g0607 Cre-Chr4:23386556 Cre10g1789 Cre-Chr10:32314845 4.80E-135 dispersed
Cre04g0607 Cre-Chr4:23386556 Cre03g1222 Cre-Chr3:13443942 5.70E-43 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g0427 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.6e-51 199.1
Cre09g2485 . 23 138 NADPH P450 reductases AT5G53560 78.4 6.1e-51 197.2
Cre06g1552 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.4e-47 186.0
Cre07g0553 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.9e-44 175.6
Cre05g0427 . 1 132 NADPH P450 reductases AT5G48810 64.9 8.6e-48 186.8
Cre06g1552 . 1 133 NADPH P450 reductases AT5G48810 60.7 2.8e-46 181.8
Cre07g0553 . 2 132 NADPH P450 reductases AT5G48810 62.4 4.0e-45 177.9
Cre09g2485 . 23 138 NADPH P450 reductases AT5G48810 61.9 2.3e-40 162.2
Cre05g0427 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.9e-51 196.8
Cre06g1552 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.9e-47 183.7
Cre07g0553 . 21 132 NADPH P450 reductases AT2G32720 70.5 2.6e-41 165.2
Cre09g2485 . 18 137 NADPH P450 reductases AT2G32720 65.0 9.7e-41 163.3
Cre08g0985 . 1 130 NADPH P450 reductases AT1G26340 54.8 2.9e-37 151.8
Cre04g0607 . 2 281 NADPH P450 reductases AT5G17770 82.1 1.1e-131 466.5
Cre10g1789 . 2 280 NADPH P450 reductases AT5G17770 78.1 8.3e-127 450.3
Cre02g2727 . 526 798 NADPH P450 reductases AT5G17770 73.3 1.0e-116 416.8
Cre05g0427 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.6e-51 199.1
Cre09g2485 . 23 138 NADPH P450 reductases AT5G53560 78.4 6.1e-51 197.2
Cre06g1552 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.4e-47 186.0
Cre07g0553 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.9e-44 175.6
Cre05g0427 . 1 132 NADPH P450 reductases AT5G48810 64.9 8.6e-48 186.8
Cre06g1552 . 1 133 NADPH P450 reductases AT5G48810 60.7 2.8e-46 181.8
Cre07g0553 . 2 132 NADPH P450 reductases AT5G48810 62.4 4.0e-45 177.9
Cre09g2485 . 23 138 NADPH P450 reductases AT5G48810 61.9 2.3e-40 162.2
Cre05g0427 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.9e-51 196.8
Cre06g1552 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.9e-47 183.7
Cre07g0553 . 21 132 NADPH P450 reductases AT2G32720 70.5 2.6e-41 165.2
Cre09g2485 . 18 137 NADPH P450 reductases AT2G32720 65.0 9.7e-41 163.3
Cre08g0985 . 1 130 NADPH P450 reductases AT1G26340 54.8 2.9e-37 151.8
Cre04g0607 . 2 281 NADPH P450 reductases AT5G17770 82.1 1.1e-131 466.5
Cre10g1789 . 2 280 NADPH P450 reductases AT5G17770 78.1 8.3e-127 450.3
Cre02g2727 . 526 798 NADPH P450 reductases AT5G17770 73.3 1.0e-116 416.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86