Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0637 ATGAGGGAAGAACACTCGAATTGGTTCTCTAGGTGGGAAGAGGAGCTTCCATCTCCAGATGAATTGATGCCTCTTTCTCAAACCCTAATAACCCCCGATCTAGCTTTGGCTTTTGATATTCAGAATCCCAGCAATAGCAGTCCGCCGTTGCCTTGTCCATCTCCGCCGCTTTCGAATCCTCTGCCTGGCTCTGGCAACGGAATTGCGCAGCCCAACTCGGCGGATTTCGGCGATTCTGCCGATTTGGGCTCCGGCGCCGCCAGCGACGAGCCGGCTCGGACCCTCAAGCGACCACGCCTTGTTTGGACGCCTCAACTCCACAAGCGATTCGTCGATGCTGTTGCTCATTTAGGGATAAAAAATGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGATGGCTTGACCAGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGCCTCTATCTCAAGCGGATGCAGGGGTTGTCCTCCGGCGGCGGCGGCGGCGGTGGTGGCTTGGTTGCTTCCTCCGATCCCGCCACTGACCATTTGTTTGCTAGCTCCCCAGTTCCACCCCATTTGCTTCACTCTGCTCGCACCAGTTCAGACCATTTCTTGCCCTTTGTTCCCATGGCCACTCTGCAGCAGCACCACCATCACCAGCAGCAGATGGCCGCTGCTGCTGCTGTCGCCGTCCATCCACAGCTCCAGCCGCCTTATCATCGGCAGGTCGGGCATTTCGGGTCACCGCCGAATGGCCAGTTTGAGCATCCATTTTTAGCTAGACAGTCCCAGCCTATCCATAGAATGGGAGCACCAGTGCCTAATTCAGTTCCTAATTACATAGAGGATTTGGAATCAGCCAATGCCAGTGGAGGAAGAAAAGTTCTCACCTTATTTCCTACTGGGGATGATTGA 906 54.64 MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPSNSSPPLPCPSPPLSNPLPGSGNGIAQPNSADFGDSADLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGGGGGGLVASSDPATDHLFASSPVPPHLLHSARTSSDHFLPFVPMATLQQHHHHQQQMAAAAAVAVHPQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGAPVPNSVPNYIEDLESANASGGRKVLTLFPTGDD 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23986529 23987434 - CrPI670011_04g006370.1 Cre04g0637 494941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0637 301 Gene3D - 94 156 - -
Cre04g0637 301 MobiDBLite consensus disorder prediction 1 91 - -
Cre04g0637 301 MobiDBLite consensus disorder prediction 1 18 - -
Cre04g0637 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Cre04g0637 301 FunFam Two-component response regulator 93 156 - -
Cre04g0637 301 Pfam Myb-like DNA-binding domain 100 149 IPR001005 -
Cre04g0637 301 MobiDBLite consensus disorder prediction 46 60 - -
Cre04g0637 301 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677(InterPro)
Cre04g0637 301 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 5 256 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g0637 301 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2302 Cre-Chr2:36539536 Cre04g0637 Cre-Chr4:23986529 1.10E-28 dispersed
Cre04g0637 Cre-Chr4:23986529 Cre10g1770 Cre-Chr10:32074803 4.30E-105 dispersed
Cre04g0637 Cre-Chr4:23986529 Cre03g0444 Cre-Chr3:2838756 8.50E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53408 PF00249 Myb_DNA-binding 2.20E-08 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0637 - - - 0.0