Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0641 ATGGCTTCAAGACAAGTTCTTCCCCAACAAATCAGAGGCGAGGCAGCGATCGGTGGAGGAAAACAGGCAAAGGGCGCAGCGGCGGCAGATGCTAGGAACCGCCGAGCATTGGGTGATATTGGGAATCTGGTAACTGTTCGAGGAGTTGACGCAAAGGCAAATCGTCCTATTACAAGGAGTTTCTGTGCTCAGTTGCTTGCTAATGCCCAAGCTGCTGCAAAAGCTGAAAATAATAAGAAACAAGTACCTGTTAATGTAGATGGGGCTGCTCCCATTCTTGATGCTGGTGTTATGGCTGTTAAGAAAGCAGGAGCTCCCAAGCCAGCACATAAGAAAGTTGCAATTAAACCGACATCGGAGGTTATCGAGATAAGCTCGGACACAGTCGAAAAAGTTAAAGCCAAGGAAGTCAAATGTGCAAACAAGAAAAAGGAAGGAGAAGGGCCCTCAAAGAAGAAAGCACAGACTCTCACTTCAGTCCTAACTGCTAGAAGCAAGGCTGCCTGTGGTGTATCCAAGAAACCTAAAGAGGAGATTTTTGATATTGATGCTGCAGATGTTGGTAATGAGTTGGCAGCAGTTGAATATGTTGAGGACATTTACACTTTCTATAAAGAAGCCGAGAATGAGAGCAGACCTCATGACTATATGGATTCACAACCTGAGATAAACTCGACCATGAGGGCTATTTTGGTGGATTGGCTGGTTGATGTCCACAACAAATTCGAACTTTCGCCCGAAACTTTCTACCTCACGATCAATATAATCGATCGATTCCTTGCGACAAAAATAGTTCCAAGAAGGGAATTGCAATTGGTGGGCATTGGAGCCATGCTTATAGCCTCCAAATATGAAGAAATTTGGGCGCCTGAGGTAAATGACTTTGTGTGTCTTTCGGATAGAGCTTACACTCATGAACAGATACTAGTGATGGAGAAAAAAATACTTGGCAAGTTGGAATGGACCTTGACTGTTCCTACACCCTACGTTTTCCTCGCTCGATTCATCAAGGCGTCCAAGGACTCCAATCACGAGATGGAAAATCTGGTTTATTTTCTGGCTGAACTTGGTATAATGCATTACAATACGGCAATGATGTATTGCCCGTCCATGATTGCCGCCTCGGCAGTCTATGCGGCTCGATGCACCCTGAAGAAAACCCCTGCTTGGGATGACACCCTCAAACTGCACACTGGTTTCTCAGAACCTCAGATAATTGACTGTGCAAAACTTCTGGTGGGGTTCCATGGGGTAGCAGAGAAGAACAAGCTTCAAGTAATATACCGAAAGTACTCGAGCTCCGAGCGGGGAGCGGTAGCGTTGCTTCAGCCAGCCAAAGCTCTGTTGGCTCTCAATGGTGGTGCTGTCCATTGA 1374 46.0 MASRQVLPQQIRGEAAIGGGKQAKGAAAADARNRRALGDIGNLVTVRGVDAKANRPITRSFCAQLLANAQAAAKAENNKKQVPVNVDGAAPILDAGVMAVKKAGAPKPAHKKVAIKPTSEVIEISSDTVEKVKAKEVKCANKKKEGEGPSKKKAQTLTSVLTARSKAACGVSKKPKEEIFDIDAADVGNELAAVEYVEDIYTFYKEAENESRPHDYMDSQPEINSTMRAILVDWLVDVHNKFELSPETFYLTINIIDRFLATKIVPRRELQLVGIGAMLIASKYEEIWAPEVNDFVCLSDRAYTHEQILVMEKKILGKLEWTLTVPTPYVFLARFIKASKDSNHEMENLVYFLAELGIMHYNTAMMYCPSMIAASAVYAARCTLKKTPAWDDTLKLHTGFSEPQIIDCAKLLVGFHGVAEKNKLQVIYRKYSSSERGAVALLQPAKALLALNGGAVH 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24012467 24014706 - CrPI670011_04g006410.1 Cre04g0641 494945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0641 457 SMART cyclin_7 233 317 IPR013763 -
Cre04g0641 457 SMART cyclin_7 330 414 IPR013763 -
Cre04g0641 457 FunFam G2/mitotic-specific cyclin-1 314 440 - -
Cre04g0641 457 Gene3D - 199 440 - -
Cre04g0641 457 SUPERFAMILY Cyclin-like 188 323 IPR036915 -
Cre04g0641 457 Pfam Cyclin, C-terminal domain 326 444 IPR004367 -
Cre04g0641 457 PANTHER CYCLINS 175 432 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cre04g0641 457 ProSitePatterns Cyclins signature. 228 259 IPR048258 -
Cre04g0641 457 CDD CYCLIN_AtCycB-like_rpt1 176 321 - -
Cre04g0641 457 PIRSF Cyclin_A_B_D_E 1 455 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cre04g0641 457 Pfam Cyclin, N-terminal domain 199 323 IPR006671 -
Cre04g0641 457 SUPERFAMILY Cyclin-like 327 447 IPR036915 -
Cre04g0641 457 Gene3D - 213 324 - -
Cre04g0641 457 SMART Cyclin_C_2 326 445 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2568 Cre-Chr2:38953356 Cre04g0641 Cre-Chr4:24012467 1.90E-111 dispersed
Cre04g0641 Cre-Chr4:24012467 Cre11g2261 Cre-Chr11:34371556 1.70E-68 dispersed
Cre04g0641 Cre-Chr4:24012467 Cre05g1879 Cre-Chr5:30930794 3.20E-43 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0641 K21777 - csv:101217210 752.281