Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0696 ATGAACGACTTGATGACCAAATCGTTCACCAGCTATGTGGATCTGAAGAAGGCAGCCATGAAAGATCTCGACCTCGAAGCTGGTTTAGAAATGCCATCGTCCGCTACCGGAGACAACGGTGACATGGGTCTTTTTCTCGAAGAAGCTGAGAAGGTGAAAATGGAGATGGGTTCAATTAGAGAGATTTTAGTTAAACTCCAACAAGCTAATGAGGAGACCAAATCTGCTCACAAACCCGAAACTCTCAAATTGCTTCGTAATACGATCAATGTCGACATCGTCACCGTCCTGAAAAAGGCGCGATTGATCCGATCTCAGCTTGAGGAAATGGACCGTGCCAATGCTGCAAAGAAACGTCTTTCTGGCAGCAAAGAAGGCACTGCCATTTACCGGACGAGAATTGCGGTGACAAACGGGCTGCGGAAGAAGCTAAAGGAATTGATGATGGAGTTTCAGAGCTTGAGGCAGAGGATGATGACGGAGTACAAGGAAACGGTCGGGCGACGGTATTTCACAGTGACGGGGGAGCATCCAGAGGAGGAGGTGATAGAGAAGATAATATCCAATGGAGGAGAGGAGTTTTTGGGGAGGGCAATAGAGGAGCACGGGCGGGGGAAAGTGGCGGAGACGGTGGTGGAGATACAAGACCGACACGGGGCGGCGAAGGAGATAGAGAAGAGTTTGCTAGAGCTACACCAAGTGTTTTTGGATATGGCAGTGATGGTTGAAGCACAAGGGGAAAAAATGGATGATATTGAACATCATGTGATGAATGCTTCACAATATGTTAGGGATGGGACTAAGGATTTGAAGACTGCAAAAGATTTGCAAAGGAACAGTAGGAAATGTATGTGTTTTGGGATTTTTCTTTTGCTTCTGATTATTTTGGTTGTTGTTATTCCTATTGCTGTTAGTTTTGGAAGTTCTTGA 930 46.02 MNDLMTKSFTSYVDLKKAAMKDLDLEAGLEMPSSATGDNGDMGLFLEEAEKVKMEMGSIREILVKLQQANEETKSAHKPETLKLLRNTINVDIVTVLKKARLIRSQLEEMDRANAAKKRLSGSKEGTAIYRTRIAVTNGLRKKLKELMMEFQSLRQRMMTEYKETVGRRYFTVTGEHPEEEVIEKIISNGGEEFLGRAIEEHGRGKVAETVVEIQDRHGAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVMNASQYVRDGTKDLKTAKDLQRNSRKCMCFGIFLLLLIILVVVIPIAVSFGSS 309
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 24920787 24921791 - CrPI670011_04g006960.1 Cre04g0696 495000
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0696 309 CDD SNARE_syntaxin1-like 210 272 - -
Cre04g0696 309 Pfam SNARE domain 248 299 IPR000727 -
Cre04g0696 309 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 39 169 - -
Cre04g0696 309 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
Cre04g0696 309 FunFam Syntaxin 132 204 304 - -
Cre04g0696 309 SUPERFAMILY t-snare proteins 41 266 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cre04g0696 309 Gene3D - 37 166 - -
Cre04g0696 309 SMART tSNARE_6 206 273 IPR000727 -
Cre04g0696 309 SMART SynN_4 37 163 IPR006011 GO:0016020(InterPro)
Cre04g0696 309 CDD SynN 42 198 IPR006011 GO:0016020(InterPro)
Cre04g0696 309 Pfam Syntaxin 45 246 IPR006011 GO:0016020(InterPro)
Cre04g0696 309 PANTHER SYNTAXIN 48 294 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cre04g0696 309 ProSitePatterns Syntaxin / epimorphin family signature. 217 257 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cre04g0696 309 Coils Coil 137 157 - -
Cre04g0696 309 Gene3D - 206 307 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0696 Cre-Chr4:24920787 Cre10g1939 Cre-Chr10:34055389 7.40E-60 dispersed
Cre04g0696 Cre-Chr4:24920787 Cre04g1143 Cre-Chr4:30039475 4.30E-60 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0696 K08486 - csv:101220775 565.459