Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0706 ATGGCAGAATTAGATCAAGAAGTAGTTGACCCTCCTCCCTTCTTTCTCTGTCCCATCTCTTTGCAAATCATGAAAGACCCCGTCACGATTGCCTCCGGCATAACCTACGACCGAGAAAACATTGAGAAATGGTTGTTTTCCGACAAACACAAGACATGCCCTGTCTCACAGGTCGTCTTGTCGGATTTCAACATCACTCCCAACCATACTTTAAGACGAGTTATTCAAGCTTGGTGCACAGTCAACGCTTGTAGTGGCGTCGAGAGGATGCCAACACCCAAACCTCCGGTCGACCGGAAACAAGTCGTTAGGATTCTCGCTGATGCCAAGTTATCTCCTTTCTCTCAGCAGAATTGTCTTCGTCGTCTTCGATCTATCGCTGCGGCGAATGAAACTAATAAACGTTGCATGGAATCTGCTGGAGCTGTGGAGTTCTTGGCTGGGCTTGTGTGTAGTTCTACAACCAACGTGGAGTCTGGCTTTGAAGATTACGCGTTTGACGACATGTCGGCAAACTTGGGGGATGAGGCTTTGAGCATTCTTCACAAACTCCAGATCTCCGAATCCGCTCTCAAATTTCTGCTCTCCAACAATGGCGGCATCTTCATCTCCACCTTAACCAAAATCTTGCAAAACCGAAGCTATTCCTCCCGAGCGTATTCAATAATGCTTCTCAATTCAATGTTCGAAGTCGCAGATCAGGTTCAAATCCTCAGTCTCACCGCCGATTTCTTCATCGAAATCGTCCAAATCCTTAAAGATCAGATCTCCAAACAAGCCTCGAAATCGGCATTGAAATTGCTAATCGGTGTCTGTTCGAGTTCCAGAAACAGAGTAAAGGCGGTTCAAGCCGGTGCAGTTCCGGTTCTGATCGATCTCCTTCTCGATCTCGATTCGTCGGAGAAGCGTTTGTGCGAGATGATTCTCGTGGTGCTTGATCTGCTGTGTGGTTGCGCCGATGGCAGGGCGGAGCTGTTGAATCACGCGGCGGGGATCGCCGTCGTGTCGAAGAAGATTTTGAGAGTTTCGTCGCTCGGAAGTGAGAAGGCGGTTGGGATCTTATGGTCCGTTGCGAGATTCTCGGCGAGCCAAACCGTCGTTCAGGAAATGCTGCGGCTGGGAGTTGTGACGAAGCTTTGTTTTCTGCTTCAAGTGGTCGACGCCGGAGCGAAAGCGAAAGAGAAAGCTAAAGAGATTCTGAAGCTTCATGGTCGGCCATGGCGGAATTCTTCTTGTTTGCCTTCGAGTCTGCGATCATCTTATCCACAACATTAG 1275 48.86 MAELDQEVVDPPPFFLCPISLQIMKDPVTIASGITYDRENIEKWLFSDKHKTCPVSQVVLSDFNITPNHTLRRVIQAWCTVNACSGVERMPTPKPPVDRKQVVRILADAKLSPFSQQNCLRRLRSIAAANETNKRCMESAGAVEFLAGLVCSSTTNVESGFEDYAFDDMSANLGDEALSILHKLQISESALKFLLSNNGGIFISTLTKILQNRSYSSRAYSIMLLNSMFEVADQVQILSLTADFFIEIVQILKDQISKQASKSALKLLIGVCSSSRNRVKAVQAGAVPVLIDLLLDLDSSEKRLCEMILVVLDLLCGCADGRAELLNHAAGIAVVSKKILRVSSLGSEKAVGILWSVARFSASQTVVQEMLRLGVVTKLCFLLQVVDAGAKAKEKAKEILKLHGRPWRNSSCLPSSLRSSYPQH 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25036341 25038864 - CrPI670011_04g007060.1 Cre04g0706 495010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0706 424 ProSiteProfiles U-box domain profile. 10 85 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre04g0706 424 SMART Ubox_2 14 78 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre04g0706 424 PANTHER WDSAM1 PROTEIN 7 416 IPR045185 GO:0061630(InterPro)
Cre04g0706 424 SUPERFAMILY RING/U-box 3 84 - -
Cre04g0706 424 Gene3D - 99 406 IPR011989 -
Cre04g0706 424 CDD RING-Ubox_PUB 12 63 IPR045210 -
Cre04g0706 424 Pfam U-box domain 12 80 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre04g0706 424 SUPERFAMILY ARM repeat 103 389 IPR016024 -
Cre04g0706 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 87 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2552 Cre-Chr2:38751617 Cre04g0706 Cre-Chr4:25036341 1.90E-95 dispersed
Cre03g1524 Cre-Chr3:30057219 Cre04g0706 Cre-Chr4:25036341 2.10E-54 dispersed
Cre04g0706 Cre-Chr4:25036341 Cre05g0351 Cre-Chr5:3200009 5.70E-55 dispersed
Cre04g0706 Cre-Chr4:25036341 Cre10g1945 Cre-Chr10:34150534 1.30E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0706 - - - 0.0