Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0718 ATGCCCATTTGCAACTCACCTCACCTCCTCAAAATCGATGTTCATCTTTCTCGAGAAGGTGCTTATAATCTTAAGGAAATCGATTTTCATCTTTCTGACAAGATCGGATTTTCTTATCTGGGTTGTTGCCATGTCGTGATTTTTCTTTATCTGAGGTTCTCCACGGAGTCTCGTTTGCGGAGAAGGGTTAGGCCATTCAGCCGAATGGAAGGGTCTGGTAGCGACCCCGACTCTCATAGAGCTGCTTCCACCAGTAGTAGTTCAAGAAGGTTTGGAATGTTATCTGCCTCGAATATTATTCAGGCTCCGCTTTCTGCGCTGTTAGAGTATTCGGGTCTTCTTCGCGGCCGCCCAAGTCATCAAGAATCTGAGGCATTGATAAGTGCGCGACTGCCTTCGGGGTTTCGAGACCATCTTCGCAGCCAGATTGAAGAATCTTCGGGTGCCACTAATGATGGAGAGGTTTCGATTAGGATAATTGGGGCAGGGGAACCAGAACATGGTAGGGATGGTGCTGGACTAGTAGTTGGGCAAGCAAGGGAAGTTAGTGGTCAGAATGCGGTGTCTTTGCAATCTGTTTCGGGGTTGGCATCTGTGACCTTGGGGTCGGATCTTAGCCAGGGCAATTCTGCTACTGAACGCGGTGCAAGAGATGGCATTCCTCAATCGATAAACGCAAATGCTGATGGAGATGCCTCGGAGGCAGCTGGGGGAAATAGCAGGGATTCTTCTTATCAGAGGTATGATATTCAACAGGCTGCTCGGGGGATTGAGCAGATTCTCCCATTTAGTTTCCTTCTACTGGTGGTCTTCATTCGACAGCATTTGCAAGGTTTCTTTGTGACAATATGGATTGCTGCTTTCATGTACAAGTCAAATGATATTTTGCGAAAACAAACAGCTTTGAAGGGGGAGAGAAAAATCTCTGTTTTGGTTGGCATTTCTCTTGCATTCACTATTCATGTTATTGGTGTGTACTGGTGGTATCAGAATGATGACCTTTTATATCCATTGATCATGCTTCCCCCAAGAGCGATTCCTCCTTTTTGGCATGCTATTTTCATCATCATGGTGAATGACACTTTGGTCCGTCAGGCAGTGATGGTGATCAAGTGTGTTCTATTGATGTATTACAAGAACAGCAGAGGCCGCAATTATCGTAAACAGGGTCAAATGTTAACTTTAGTCGAATATTTGCTGCTACTGTACCGTGCCTTATTGCCTACTCCCGTTTGGTATCGTTTCTTTTTGAACAAAGAGTACGGGAGCCTATTTTCGTCACTGTTGACAGGACTGTACTTAACTTTCAAACTCACATCTGTTGTCGAAAAGGTGCAATCCTTCTTTGCTGCTTTGAAAGCACTGTCACGTAAAGAGGTGCATTATGGGGCATATGCAACGTCAGAGCAGGTCAGCGCAGCTGGTGATTTGTGTGCTATTTGCCAAGAGAAGATGCATGCTCCTATCCTACTCCGATGTAAACACATATTTTGTGAAGATTGTGTATCAGAGTGGTTCGAGCGGGAACGAACGTGCCCATTGTGTAGGGCTTTGGTTAAACCTGCGGATCTCAGGTCATTTGGCGATGGATCAACAACTGCTACTCTGGAGGAAGCAAAAACTGGCGCTCGTGAACTCGGAAAGGGGAATTCGAAATCGACATGTATACATAAATAG 1677 45.56 MPICNSPHLLKIDVHLSREGAYNLKEIDFHLSDKIGFSYLGCCHVVIFLYLRFSTESRLRRRVRPFSRMEGSGSDPDSHRAASTSSSSRRFGMLSASNIIQAPLSALLEYSGLLRGRPSHQESEALISARLPSGFRDHLRSQIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAREVSGQNAVSLQSVSGLASVTLGSDLSQGNSATERGARDGIPQSINANADGDASEAAGGNSRDSSYQRYDIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKISVLVGISLAFTIHVIGVYWWYQNDDLLYPLIMLPPRAIPPFWHAIFIIMVNDTLVRQAVMVIKCVLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRKEVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTTATLEEAKTGARELGKGNSKSTCIHK 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25292403 25302576 - CrPI670011_04g007180.1 Cre04g0718 495022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0718 558 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 453 526 IPR013083 -
Cre04g0718 558 Pfam Ring finger domain 477 516 IPR001841 -
Cre04g0718 558 CDD RING-HC_RNFT1-like 476 516 - -
Cre04g0718 558 MobiDBLite consensus disorder prediction 206 243 - -
Cre04g0718 558 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 75 535 IPR044235 GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:1904294(InterPro)
Cre04g0718 558 ProSiteProfiles Zinc finger RING-type profile. 478 516 IPR001841 -
Cre04g0718 558 ProSitePatterns Zinc finger RING-type signature. 493 502 IPR017907 -
Cre04g0718 558 SUPERFAMILY RING/U-box 473 521 - -
Cre04g0718 558 SMART ring_2 478 515 IPR001841 -
Cre04g0718 558 MobiDBLite consensus disorder prediction 67 89 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0718 Cre-Chr4:25292403 Cre07g0915 Cre-Chr7:8465649 2.70E-153 dispersed
Cre09g2271 Cre-Chr9:41911244 Cre04g0718 Cre-Chr4:25292403 1.60E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0718 - - - 0.0