Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0723 ATGGACCAGCTTATCAGTTGGAATAAGGGAGATCCTTGCACAGATAATTGGATTGGAGTAGTATGCAGCTATTCTGATGGAGCTGTCAGGAACTTACGTGTCAAAGAACTCCAGCTATTGTACATGGACCTATCTGGAAAGTTAGCCCCTGAGATCAGCCAACTGTCCGTGCTTGAGAAGTTAAATTTCATGTGGAATAACCTAACTGGTTCAATTCCAAAGGAGATTGGCAGTATTTTGTCGCTGAAACTTTTACTCCTAAATGGAAATAAACTATCTGGTTCTCTTCCGGATGAGCTTGGTAATCTGACAAATCTCAACCGGTTCCAAGTAGATCAGAATCAAATTTCTGGGCCTATCCCAAAATCATATGCCAACTTGATCCGTGTGAAGCACCTCCACTTCAATAACAACACACTAAGTGGTGAAATTCCATCTGAGCTTTCCAAATTACCCAAGCTTATTCACTTGCTTTTGGATAACAATAACTTGTCGGGTTCTCTGCCACCAGAATTTTCGACCTTGCCAATGCTACACATTCTGCAACTTGATAATAACAACTTCGAAGGTGAAATTCCGGCATCTTATGAAAATTTTCCTAAATTAGTGAAATTAAGTCTGAGGAATTGTGGCTTGGAGGGACCGATTCCTAATTTTAGCAAGATAGCAAACCTCAGTTACTTAGATCTTAGCTGGAACCATTTTACTGGACCCATACCACCTTATAACCTCTCTTCTAGGATGACAACAATAATTTTGTCGAACAACCAGCTGAATGGATCTATACCCAGAAGTTTCTCCAATCTTCCTATCCTCCAGAAACTGTCACTTGAGAATAATTTTCTGAATGGTTCTGTACCTTCTGCTCTATGGGAGACAATGTCCTTCGAATCAAGTGCTCGACTTACACTCGATCTTCGGAACAATACGTTCTCTGACATTTCTGGAAGCACAAACCCTCCTGCTAATGTCACCCTAAGGCTTGGAGGAAATCCAATCTGCCAAAATTTGAGCGGACAAAACTCTGACCAGTTCTGTACATCAAAAATGGTAGTGGATGGGCTTCATACAAGCTCAAGGAATTCCAGTAAAACATGTCCGGTTAGCAGTTGTCCAACGGACAGTTTCTTTGAATTAGTGCCAGACACTCCTGACCCATGCTTTTGTGCATCACCCCTTGGGATTGGATATAGGCTGAAGAGTCCAAGTTTTTCCTACTTTCCTCCGTACATGCATTTATTTGAAGTGTATCTGACAAAGGAACTCGGTTTGAATAAGCACCAATTGTTAATCGATTCATACGATTGGGAAGGAGCTCGCCTGAGGATGTATCTGAAGCTTTTTCCATCATTTGATAGTGGCACTCATAAATTGGATATAACTGAGATATTTCTCATTACAGAACAATTTATGTCATGGAATTTTACCCCAAATGACGTGTTTGGCCCATACGAGCTTCTCAACTTCACACTCCCTGACCGTTTTCAGACTGTCATTTTCGAGACAGAGAAGATGGGCATTAGTACAGGCATCCTGGCAGCCATTATAGTTGGATCTGTTTTTTGTATTCTTTTGATCGTAGCAGTAACCGTACTTCTAGTCACTAGGCATTCTAGATACCATCAGGTTTTGTCAAGGAAAAATCTCTCTTCAACGATTGGTCTGAAAATTGATGGTGTAAAAGCATTTTCATTCAAAGAAGTGCAATTGGCTACTGGAAATTTCAACCGCTCAACTCAAGTTGGCCGAGGTGGTTATGGCAAGGTCTATAAAGGCATACTATCAGATAATTCAGTTGTAGCCATCAAGCGTGCAGAAGAAGGATCTTTACAAGGCCAAAAAGAATTTTTGACGGAGATTAAACTCTTATCACGATTGCATCACCGAAACTTAGTATCCCTAATCGGATATTGTGATGAAGAAGGGGAACAAATGCTGGTTTACGAGTTTATGCCGAATGGAACTTTGCGGGACTGGCTTTCTGGTTTTGAGTTTTCTGACAAAAGTAACACTACAGTAAATCTGAATTTTCGTATGAGACTACAAATTGCACTGGGTTCAGCTAAAGGTATACTGTATCTCCACACTGAAGCAAATCCTCCTATATTTCACCGAGACATCAAAGCTAGAAACATACTCCTCGATGCCAAGTTCACGGCCAAAGTGGCTGATTTTGGATTGTCACGTCTTGCTCCTGATCTGGATTTCGAGGGGGATGTTCCTGGACACATATCTACTGTTGTGAAGGGTACCCCTGGTTATCTTGATCCAGAGTACTTTTTAACCCGTAAACTGACAGACAAAAGTGATGTCTATAGCTTAGGAGTTGTGTTCTTGGAGCTCTTGACGGGTATGCACCCTATTTCGCATGGCAAAAACATCGTTCGTGAGGTAAAATTGGCACATCAAATGGGAACAATTCTTTCAATTGTAGACACCAGTTTGGGTTCTTTTGCATCTGAGTGTTTAGAGAGGTTTGTCGCTTTGGCCCTCAGTTGTTGCCATGACCATCCAGAAGAGCGGCCGTCGATGCTGGTTGTGGTGAGGGAGCTGGAGAACATACTAAACATGATGCCCGACGATAGCGGCACCTTGTATTCAGACTTGTCCACAAGATCAAGTGCCAGGCTTCCATCCTCACCGACATCAACGTCCTGCATCACCCGGGACCAGTTTGCATCAGGAAGCATTTCGGGGAGCGATCTCATCAGTGATGTCATGCCAACCATCAGACCTCGATGA 2742 42.38 MDQLISWNKGDPCTDNWIGVVCSYSDGAVRNLRVKELQLLYMDLSGKLAPEISQLSVLEKLNFMWNNLTGSIPKEIGSILSLKLLLLNGNKLSGSLPDELGNLTNLNRFQVDQNQISGPIPKSYANLIRVKHLHFNNNTLSGEIPSELSKLPKLIHLLLDNNNLSGSLPPEFSTLPMLHILQLDNNNFEGEIPASYENFPKLVKLSLRNCGLEGPIPNFSKIANLSYLDLSWNHFTGPIPPYNLSSRMTTIILSNNQLNGSIPRSFSNLPILQKLSLENNFLNGSVPSALWETMSFESSARLTLDLRNNTFSDISGSTNPPANVTLRLGGNPICQNLSGQNSDQFCTSKMVVDGLHTSSRNSSKTCPVSSCPTDSFFELVPDTPDPCFCASPLGIGYRLKSPSFSYFPPYMHLFEVYLTKELGLNKHQLLIDSYDWEGARLRMYLKLFPSFDSGTHKLDITEIFLITEQFMSWNFTPNDVFGPYELLNFTLPDRFQTVIFETEKMGISTGILAAIIVGSVFCILLIVAVTVLLVTRHSRYHQVLSRKNLSSTIGLKIDGVKAFSFKEVQLATGNFNRSTQVGRGGYGKVYKGILSDNSVVAIKRAEEGSLQGQKEFLTEIKLLSRLHHRNLVSLIGYCDEEGEQMLVYEFMPNGTLRDWLSGFEFSDKSNTTVNLNFRMRLQIALGSAKGILYLHTEANPPIFHRDIKARNILLDAKFTAKVADFGLSRLAPDLDFEGDVPGHISTVVKGTPGYLDPEYFLTRKLTDKSDVYSLGVVFLELLTGMHPISHGKNIVREVKLAHQMGTILSIVDTSLGSFASECLERFVALALSCCHDHPEERPSMLVVVRELENILNMMPDDSGTLYSDLSTRSSARLPSSPTSTSCITRDQFASGSISGSDLISDVMPTIRPR 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25370642 25381501 - CrPI670011_04g007230.1 Cre04g0723 495027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0723 913 Gene3D Ribonuclease Inhibitor 1 242 IPR032675 -
Cre04g0723 913 SMART serkin_6 575 858 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g0723 913 Gene3D Transferase(Phosphotransferase) domain 1 651 867 - -
Cre04g0723 913 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 651 866 - -
Cre04g0723 913 Pfam Leucine Rich Repeat 81 103 IPR001611 GO:0005515(InterPro)
Cre04g0723 913 Pfam Leucine Rich Repeat 224 241 IPR001611 GO:0005515(InterPro)
Cre04g0723 913 Pfam Leucine Rich Repeat 153 175 IPR001611 GO:0005515(InterPro)
Cre04g0723 913 Pfam Leucine Rich Repeat 249 269 IPR001611 GO:0005515(InterPro)
Cre04g0723 913 Pfam Leucine Rich Repeat 130 151 IPR001611 GO:0005515(InterPro)
Cre04g0723 913 ProSitePatterns Serine/Threonine protein kinases active-site signature. 702 714 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g0723 913 Gene3D Phosphorylase Kinase; domain 1 546 650 - -
Cre04g0723 913 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 99 192 - -
Cre04g0723 913 Pfam Protein kinase domain 576 847 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g0723 913 PANTHER RECEPTOR-LIKE PROTEIN 55 4 852 - -
Cre04g0723 913 Gene3D Ribonuclease Inhibitor 243 366 IPR032675 -
Cre04g0723 913 ProSiteProfiles Protein kinase domain profile. 575 855 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g0723 913 CDD STKc_IRAK 581 854 - -
Cre04g0723 913 SUPERFAMILY L domain-like 9 340 - -
Cre04g0723 913 SUPERFAMILY Protein kinase-like (PK-like) 560 882 IPR011009 -
Cre04g0723 913 FunFam Leucine-rich repeat protein kinase family protein 539 650 - -
Cre04g0723 913 FunFam Leucine-rich repeat receptor-like kinase 2 98 - -
Cre04g0723 913 ProSitePatterns Protein kinases ATP-binding region signature. 581 603 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0324 Cre-Chr3:1667531 Cre04g0723 Cre-Chr4:25370642 3.10E-181 dispersed
Cre04g0723 Cre-Chr4:25370642 Cre10g1471 Cre-Chr10:28570798 7.90E-94 dispersed
Cre04g0723 Cre-Chr4:25370642 Cre04g0731 Cre-Chr4:25517845 5.90E-65 proximal
Cre07g0772 Cre-Chr7:6051053 Cre04g0723 Cre-Chr4:25370642 4.30E-59 transposed
Cre10g2392 Cre-Chr10:37962893 Cre04g0723 Cre-Chr4:25370642 3.80E-94 wgd
Cre11g1014 Cre-Chr11:7454804 Cre04g0723 Cre-Chr4:25370642 5.90E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64028 PF00069 Pkinase 2.30E-46 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0723 - - - 0.0