Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0728 ATGAGGCTACAATCCCTTTTTGCAGCATCATCTTTACTCTTACTCATATATTTTCTCTCCTTCATTGCGGCTGATCTAAACTCAGACCGGCAAGCTCTTCTGGAGTTTATTTCAACAGTTCCCCATGGTCGGAAAATTAACTGGGATCCATCTACCCCGGTATGCACTACATGGGTTGGCGTCACTTGCACTTCAGACCTCTCTAATGTGCTTGCTCTCAGGCTGCCTGCTGTTGGACTGTATGGTCCGATCCCGGCCAATACACTTGGAAAGTTAGATGCCCTTAGAACTTTGAGTCTTCGATCTAATAATCTTAATGGAAATCTTCCATCAGATGTGCTATCCCTTCCCTCCCTAAAGTTTATATATCTTCAACACAATAATTTTTCTGGTAAAATACCTTCTTCCCTGTCGCCTAGCCTTACCTTCCTTGATCTGTCCTTCAACTCTCTCACTGGAAACATTCCGAAATCAATACAAAATGTAACGCACCTCACTGGCCTCAACGTCCAAAACAACTCCCTGACCGGATCCATTCCTGATATAGGTCGCCTAAAGCTTAAGCAATTGAACTTGAGCTACAACCATCTTAGCGGTCCCATTCCTGCTTCACTGCAATCATTTCCTACTTCTTCCTTTGAAGGGAACTCACTGCTATGTGGCTCGCCACTTAAAAATTGCTCAGTCGGTGCCCCCTTACCTTCTCCGTCTCCTGTTTCTTTGCCCCCACCAAAGAAAAAGAGCAAAAAGAAAATAAATATTGGAGCTATTGTTGCCATCGCCTTAGGTGGTGCTGCGGTGCTCTTCCTCCTCATGTTATTGATTGTTGTCTGCTGTATGAAGCGAAAAGATGGTGAAGGTAGTGCTGCTGCTGTGAAAGGAAAGGGTAAAAGGACTGAGCAACCGAAGGAGGATTTCGGAAGCGGGGTACAAGAGCCTGAGAAAAATAGGCTGGTTTTCTTTGAAGGATGTTCTTATAATTTTGATCTTGAGGACTTGTTAAGGGCGTCTGCTGAAGTGCTTGGAAAAGGGAGTTATGGAACTACTTACAAGGCAATCTTGGAGGAAGGAGTAACAGTGGTAGTAAAGAGGTTGAAGGAAGTGGTGGCTGGGAAAAAGGAATTTGATCAACAGATGGAGATTGTTGGGAGGATGGGCCAGCATCCAAACGTCGTGCCTCTCCGTGCCTATTACTATTCAAAAGATGAGAAGCTTTTGGTTTACGACTATGCCGTTGCTGGAAGCTTTTCAGCATTACTCCGTGGAAGCCGAGAAGGTGGACGAGCGCCACCGGACTGGGAAACAAGATTGAAGGTTTCCTTGGGGTGTGCCAAAGGGCTTGCACATATCCATTCAGCAAGTGGGGGGAAATTCATCCATGGCAACATAAAGTCCTCTAACATCCTTCTCACACAAGACCTGAATGGTTGTATTTCAGATTTTGGCCTGACTCCTTTGATGAACTCCCCTGCCATTCCCTCTAGAAGCGTAGGTTATCGTGCTCCAGAGGTGATCGAGACTCGAAAATCAACTCAAAAGTCAGATGTTTACAGTTTTGGAGTTGTTTTGCTAGAGATGTTGACTGGGAAAGCACCATCCCAATCACCCGGCCGCGATGATGTTATGGACCTTCCGAGATGGGTCCAGTCTGTGGTAAGAGAGGAATGGACATCTGAGGTGTTTGATGTAGAGCTAATGAAGTATCAGAACATTGAAGAAGAGCTTGTTCAAATGCTCCAAATAGCGATGGCTTGCGTGTCTCGAGTGCCAGATATGAGACCAACGATGGAAGAAGTAGTTAGGATGATCGAGGAAATCCGACAATTAGACTCAGGAACTCGACCATCATCAGAAGATAACAAAGCTGGGGACGGGGACGATGACTTGAACACTCAGACCTTCTCTTTCCTGCCGATCCTGATCTTCATCCCCTCGTCGATCGCAAACCCTTTTGATTTCTCAAGGTTTTTCTCTCATTTTCCGCCTTTTCTTGCGTTCTGTGTTGGCCCTGTAGCTGAAGATATGTTCCATTGGCAAGCGACCATTATGGGACCATCTGATAGTCCTTATTCAGGAGGTGTTTTTCTTGTCAATATTCATTTTCCTCCAGATTATCCTTTCAAGCCCCCCAAGGTTGCTTTTAGGACCAAAGTGTTTCACCCAAATATCAATAGCAATGGAAGCATTTGTCTTGACATCCTTAAAGAACAGTGGAGCCCTGCGCTTACGATTTCCAAGGTACTGCTTTCCATATGCTCATTGCTGACTGATCCAAACCCAGACGACCCTCTTGTACCAGAGATCGCGCACATGTACAAGACCGACCGAACCAAATATGAAGCGAGTGCACGGAGCTGGACTCAGAAGTATGCGATGGGTTGA 2382 45.68 MRLQSLFAASSLLLLIYFLSFIAADLNSDRQALLEFISTVPHGRKINWDPSTPVCTTWVGVTCTSDLSNVLALRLPAVGLYGPIPANTLGKLDALRTLSLRSNNLNGNLPSDVLSLPSLKFIYLQHNNFSGKIPSSLSPSLTFLDLSFNSLTGNIPKSIQNVTHLTGLNVQNNSLTGSIPDIGRLKLKQLNLSYNHLSGPIPASLQSFPTSSFEGNSLLCGSPLKNCSVGAPLPSPSPVSLPPPKKKSKKKINIGAIVAIALGGAAVLFLLMLLIVVCCMKRKDGEGSAAAVKGKGKRTEQPKEDFGSGVQEPEKNRLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTTYKAILEEGVTVVVKRLKEVVAGKKEFDQQMEIVGRMGQHPNVVPLRAYYYSKDEKLLVYDYAVAGSFSALLRGSREGGRAPPDWETRLKVSLGCAKGLAHIHSASGGKFIHGNIKSSNILLTQDLNGCISDFGLTPLMNSPAIPSRSVGYRAPEVIETRKSTQKSDVYSFGVVLLEMLTGKAPSQSPGRDDVMDLPRWVQSVVREEWTSEVFDVELMKYQNIEEELVQMLQIAMACVSRVPDMRPTMEEVVRMIEEIRQLDSGTRPSSEDNKAGDGDDDLNTQTFSFLPILIFIPSSIANPFDFSRFFSHFPPFLAFCVGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRTKYEASARSWTQKYAMG 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25481720 25488282 + CrPI670011_04g007280.1 Cre04g0728 495032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0728 793 PANTHER OS05G0588300 PROTEIN 12 618 IPR050994 -
Cre04g0728 793 Gene3D Ribonuclease Inhibitor 187 228 IPR032675 -
Cre04g0728 793 MobiDBLite consensus disorder prediction 289 310 - -
Cre04g0728 793 Pfam Protein kinase domain 339 601 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g0728 793 Gene3D Phosphorylase Kinase; domain 1 303 410 - -
Cre04g0728 793 Gene3D Ribonuclease Inhibitor 26 184 IPR032675 -
Cre04g0728 793 FunFam pollen receptor-like kinase 1 303 410 - -
Cre04g0728 793 MobiDBLite consensus disorder prediction 607 627 - -
Cre04g0728 793 CDD UBCc 661 787 IPR000608 -
Cre04g0728 793 Pfam Ubiquitin-conjugating enzyme 668 786 IPR000608 -
Cre04g0728 793 CDD STKc_IRAK 341 606 - -
Cre04g0728 793 ProSiteProfiles Protein kinase domain profile. 335 606 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g0728 793 SUPERFAMILY UBC-like 664 792 IPR016135 -
Cre04g0728 793 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 411 617 - -
Cre04g0728 793 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 719 734 IPR023313 -
Cre04g0728 793 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 644 792 IPR000608 -
Cre04g0728 793 MobiDBLite consensus disorder prediction 607 626 - -
Cre04g0728 793 SUPERFAMILY Protein kinase-like (PK-like) 339 604 IPR011009 -
Cre04g0728 793 SUPERFAMILY L domain-like 39 225 - -
Cre04g0728 793 Gene3D Ubiquitin Conjugating Enzyme 652 793 IPR016135 -
Cre04g0728 793 Pfam Leucine Rich Repeat 140 161 IPR001611 GO:0005515(InterPro)
Cre04g0728 793 Pfam Leucine Rich Repeat 118 138 IPR001611 GO:0005515(InterPro)
Cre04g0728 793 Pfam Leucine Rich Repeat 95 114 IPR001611 GO:0005515(InterPro)
Cre04g0728 793 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515(InterPro)
Cre04g0728 793 Gene3D Transferase(Phosphotransferase) domain 1 413 627 - -
Cre04g0728 793 ProSitePatterns Protein kinases ATP-binding region signature. 341 372 IPR017441 GO:0005524(InterPro)
Cre04g0728 793 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Cre04g0728 793 FunFam Ubiquitin-conjugating enzyme E2 D2 657 792 - -
Cre04g0728 793 SMART ubc_7 650 792 - -
Cre04g0728 793 FunFam Probable inactive receptor kinase RLK902 26 182 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2205 Cre-Chr2:35711982 Cre04g0728 Cre-Chr4:25481720 1.20E-178 dispersed
Cre04g0728 Cre-Chr4:25481720 Cre05g1050 Cre-Chr5:9722473 6.10E-183 dispersed
Cre04g0728 Cre-Chr4:25481720 Cre09g2306 Cre-Chr9:42322828 1.70E-201 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64029 PF00069 Pkinase 1.10E-37 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0728 - - - 0.0