Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0736 ATGACATCTGGTCAGCCCTTGCTGGCTTCATCAGATTCTCCATCAGTTATTGAATACAGATCCCCATCTCGAAATCGTGGTTCCGTTGGTTGTCTATGTCGCAGTGCTTCCTTCACCTCTTCCAGTTACGACGATGCTCAGAGTGACATTGTGGGTGTGAAGGAAAACTGCACCAGCCCTTTTGGAGATAACGGTTGGAGTAGTGAGAATTGCCTCAGACGGTCCACTTCGCTTTCTAGAAAGAGGCAGTTTTATACTGTTGGCTCTCTGTTTCCTCAGCAGTTTCCTTTTGGCTACCCCACCCAGGATAGAAGACGCCTGGTCTCGTGGGGTGCAATGGAGTTGCATAATGATGACCCTGCAAGCTTTGAACTTACTAGGGTCCAGGAGAAGTTGCATAAGGCACAAAGAAGTCGTCATAAGAGCATACAGTTTGATGATAATTTACAACATGACGATAATCCAAGGTTGATATACATCAATGATCCAAGGAGAACTAATGACAAGTATGAGTTCACAGGAAATGAGATAACCACCAGCAAGTACACATTGATTACCTTCTTGCCAAAGAACCTCTTTATTCAGTTCCACCGTGTAGCATATCTTTATTTTCTTGCCATTGCAGCTCTTAACCAGCTTCCACCTTTGGCAGTCTTTGGGAGAACAGTATCTCTTTTTCCCCTTCTGTTTGTGCTCTGTGTTACAGCTATTAAAGACGGCTACGAAGATTGGCGTAGACACAGATCTGATCGCAATGAGAACAATAGACAGGCTCTGGTGTTTCAATCTGATGATTTCCGATTGAAAGTATGGAAAAAAATACGAGCAGGTGAAGTTGTAAAGATTTGTGCTGATGAGGTCATTCCTTGTGACATGGTTTTATTGGGGACAAGTGATCCCAGTGGCCTTGCTTACATCCAAACGATGAATTTGGATGGTGAGTCAAACTTGAAGACAAGGTATGCTAGGCAGGAAACAGCATCTGCAGTAGCCGAGGGATGTTCATATTCTGGTCTTATTCGATGTGAACAACCTAATAGGAACATTTATGAGTTCACTGCCAATATGGAGTTCAACGGTCATAAATTTCCCCTCAGCCAGTCAAACATAGTCTTGCGTGGTTGTCAGCTAAAGAACACTGAATGGATTATTGGGGTGGTTGTCTATGCTGGACAAGAGACAAAAGCCATGCTAAACAGTGCAATGTCTCCTGCCAAGCGAAGTAAACTGGAGGGTTACATGAACAGGGAAACATTGTGGTTGTCAATTTTCCTCTTTATCATGTGTCTAGTTGTGGCCCTTGGAATGGGCTCATGGCTCGTTCGGCACAAGGAACGGCTTGATACCTTGCCATATTATAGGAAAAGGTATTTCACTAATGGGGCAGATGATGGTAAGAGGTACAGGTTTTATGGAATTCCTATGGAGACATTTTTCTCCTTTCTGAGTTCTATTATAGTGTTTCAGATCATGATACCGATATCCCTTTATATTACGATGGAGATGGTGAGACTAGGCCAGTCATATTTCATGATTGAAGATAAGCACATGTACTGCAGAATCTCTTCGTCAAGGTTCCAGTGCAGATCGTTGAATATCAATGAGGATCTTGGTCAAGTTCGCTACGTATTTTCTGATAAAACAGGAACACTTACTGAAAATAAAATGGAATTTAAAAGAGCAAGCGTGCACGGGAAGAATTACGGGAACAACTTGTCTGAGGAATATTCATCGATGTTGTATTCCATCCCAGCAACTTTAGGGAGGAGGAGGTGGAAACTTAAATCTGAAGTTGCTGTTGATACCGAACTTGTCAAATTATTGCACAAGGGTCTAAACGGAGATGAAAAGATTGCTGCACATGAATTTTTTCTTACATTGGCTGCATGCAATACTGTAATTCCTATTCACATGGATGACAAATCTAATTATGCAAATGGTGAATTGCTCGAGGATTTTGAAACTATTGATTATCAGGGGGAATCCCCTGACGAGCAAGCACTAGTTGCTGCAGCCTCCGCTTATGGATATACCCTTTTTGAGCGCACGTCGGGGCATATCGTTATTGATGTCAATGGTGAGAACTTAAGGTTAGACGTTTTGGGTTTACATGAGTTCGATAGTGTTCGCAAAAGAATGTCTGTCGTCATCAGATTCCCCGACAACACTATAAAGGTTCTGGTAAAAGGTGCCGATACTTCAATGTTGAGTATTTTAGGCATTGACTATGATAGGGAAGAATTTATCAAGCATACTACTCAGAGCCATTTGGGTGAATATTCAATGGAAGGTTTGCGAACACTTGTAGTTGCTGCCAGAGATCTGAAAGATTCTGAATTTGAGTTGTGGCAGACCAGATATGAGGATGCTAGTACTTCACTGACTGAAAGAGCAGTAAAACTACGTCAGACAGCAGCCCTTATAGAATGCAATCTAAAGCTTTTGGGTGCAACCGCGATTGAGGACAAACTTCAAGATGGTGTACCTGAAGCCATTGAATCTCTTCGGCAGGCGGGAATAAAGGTTTGGATTCTGACTGGAGATAAGCAGGAGACAGCCATATCAATCGGTCTCTCCTGCAAACTGCTGACTTCTGATATGCAGTCAATAATTATCAATGGAAATTCCGAGAATGATTGCAGGCAACTTTTAGCTGATGCTATGGCAAAATATAGTATTAAATCAACACAGTGCGGAAGTCAAAGACCGAATCATAAGAATTGTGAGAATGAATGTCATGATTTACCAAAGACATCTAGTATGTCAGATTTTAACGAAGGGAAAGAAGACCTGACTGATAAACCACTAGCTCTAATAATTGACGGAAACAGTTTGGTGTATATTTTGGAGAAGGAATTGGAGTCTGAGCTTTTTGACCTTGCAACTTCATGCGATGTTGTGCTATGTTGTCGTGTCGCTCCTCTGCAGAAAGCTGGAATTGTTGATTTGATCAAGAGTAGAACTGATGATATGACATTGGCAATTGGTGATGGGGCCAATGATGTCTCAATGATTCAGATGGCCGATGTAGGTGTTGGTATATGTGGACAGGAGGGGCGTCAAGCAGTAATGGCATCTGATTTTGCCATGGGACAATTTCGCTTTCTAAAAAGATTGCTACTAGTGCATGGACATTGGAACTATCAACGTGTAGGCTACATGGTTCTTTACAACTTCTACCGCAATGCTGTTTTCGTCTTGATGCTCTTCTGGTACATTCTATGCACGGCATTCTCAACAACTTCAGCTTTGACTGATTGGAGTAGTGTGTTTTACTCTGTTATTTATACTTCTATCCCTACTATTTTTGTTGGTATTCTGGACAAAGACTTGAGTGACAAAACTTTACTCCAATATCCTAAGCTGTATGGTGCTGGCCATAGACAGGAGGCATACAATTTGCGTCTCTTTTGGTTCACAATGATTGATACCCTGTGGCAGAGTCTTGTTCTCTTCTATGTCCCATTATACATTTACAAGGAGAGTACCATTGATATATGGAGCTTGGGAAGTTTGTGGACGATAGCGGTTGTTATCCTTGTGAACGTACACTTGGCGATGGATGTTCAACGTTGGGTATATATTACACATGCTGCCGTCTGGGGATCCATAGTCATAACATATGCCTGCATGGTGGTGTTGGATTCGATACCGGTTTTTCCTAACTACTGGACGATCTTTCATCTCGCCAAGTCCCCAACTTACTGGCTAACTATATTGCTCATAATAGTTGTAGCATTGCTTCCACGTTATCTTTTTAAAGTTGTGAATCAAAGATTTTGGCCCTCAGATATTCAGATAGCCAGAGAAGCTGAGGTGCTGAGAAAACGAAAAGATGGCTTCCCTGTGGTACACATGCGTGATGGTAACTTTGAAGACACGACGTGCATCACGAGAGTTGGATCACAGAGTTTGGAGTCGGGATGCGAAATTCGTGTCCGAACTGGAGGAGGGATCTCGAGTCATAGGGTTTATGTTTTGTTGTTTTTGGTTGGAATGCAAGAGGAGGATGAAACTAATGCAGAATTCTCTGATACTGTATCATATGATATTAGGGTGATGAGGTAA 4068 42.08 MTSGQPLLASSDSPSVIEYRSPSRNRGSVGCLCRSASFTSSSYDDAQSDIVGVKENCTSPFGDNGWSSENCLRRSTSLSRKRQFYTVGSLFPQQFPFGYPTQDRRRLVSWGAMELHNDDPASFELTRVQEKLHKAQRSRHKSIQFDDNLQHDDNPRLIYINDPRRTNDKYEFTGNEITTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNRQALVFQSDDFRLKVWKKIRAGEVVKICADEVIPCDMVLLGTSDPSGLAYIQTMNLDGESNLKTRYARQETASAVAEGCSYSGLIRCEQPNRNIYEFTANMEFNGHKFPLSQSNIVLRGCQLKNTEWIIGVVVYAGQETKAMLNSAMSPAKRSKLEGYMNRETLWLSIFLFIMCLVVALGMGSWLVRHKERLDTLPYYRKRYFTNGADDGKRYRFYGIPMETFFSFLSSIIVFQIMIPISLYITMEMVRLGQSYFMIEDKHMYCRISSSRFQCRSLNINEDLGQVRYVFSDKTGTLTENKMEFKRASVHGKNYGNNLSEEYSSMLYSIPATLGRRRWKLKSEVAVDTELVKLLHKGLNGDEKIAAHEFFLTLAACNTVIPIHMDDKSNYANGELLEDFETIDYQGESPDEQALVAAASAYGYTLFERTSGHIVIDVNGENLRLDVLGLHEFDSVRKRMSVVIRFPDNTIKVLVKGADTSMLSILGIDYDREEFIKHTTQSHLGEYSMEGLRTLVVAARDLKDSEFELWQTRYEDASTSLTERAVKLRQTAALIECNLKLLGATAIEDKLQDGVPEAIESLRQAGIKVWILTGDKQETAISIGLSCKLLTSDMQSIIINGNSENDCRQLLADAMAKYSIKSTQCGSQRPNHKNCENECHDLPKTSSMSDFNEGKEDLTDKPLALIIDGNSLVYILEKELESELFDLATSCDVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFRFLKRLLLVHGHWNYQRVGYMVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSIPTIFVGILDKDLSDKTLLQYPKLYGAGHRQEAYNLRLFWFTMIDTLWQSLVLFYVPLYIYKESTIDIWSLGSLWTIAVVILVNVHLAMDVQRWVYITHAAVWGSIVITYACMVVLDSIPVFPNYWTIFHLAKSPTYWLTILLIIVVALLPRYLFKVVNQRFWPSDIQIAREAEVLRKRKDGFPVVHMRDGNFEDTTCITRVGSQSLESGCEIRVRTGGGISSHRVYVLLFLVGMQEEDETNAEFSDTVSYDIRVMR 1355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25574941 25580999 + CrPI670011_04g007360.1 Cre04g0736 495040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0736 1355 SUPERFAMILY HAD-like 539 1041 IPR036412 -
Cre04g0736 1355 Gene3D - 541 553 IPR023214 -
Cre04g0736 1355 Pfam haloacid dehalogenase-like hydrolase 784 857 - -
Cre04g0736 1355 Pfam Phospholipid-translocating P-type ATPase C-terminal 1023 1263 IPR032630 -
Cre04g0736 1355 SFLD p-type atpase 528 1046 IPR044492 -
Cre04g0736 1355 SUPERFAMILY Calcium ATPase, transmembrane domain M 172 1262 IPR023298 -
Cre04g0736 1355 Gene3D - 520 540 - -
Cre04g0736 1355 CDD P-type_ATPase_APLT_Dnf-like 174 1155 - -
Cre04g0736 1355 Gene3D - 234 401 - -
Cre04g0736 1355 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 148 1271 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Cre04g0736 1355 Gene3D - 554 576 IPR023299 GO:0000166(InterPro)
Cre04g0736 1355 Gene3D - 812 1035 IPR023214 -
Cre04g0736 1355 NCBIfam HAD-IC family P-type ATPase 477 568 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cre04g0736 1355 NCBIfam HAD-IC family P-type ATPase 966 1081 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cre04g0736 1355 ProSitePatterns E1-E2 ATPases phosphorylation site. 546 552 IPR018303 -
Cre04g0736 1355 NCBIfam phospholipid-translocating P-type ATPase 172 1270 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Cre04g0736 1355 SFLD Haloacid Dehalogenase 528 1046 - -
Cre04g0736 1355 Pfam Phospholipid-translocating ATPase N-terminal 158 223 IPR032631 -
Cre04g0736 1355 Pfam Cation transport ATPase (P-type) 661 737 - -
Cre04g0736 1355 MobiDBLite consensus disorder prediction 1 28 - -
Cre04g0736 1355 Pfam E1-E2 ATPase 256 501 - -
Cre04g0736 1355 Gene3D - 658 795 IPR023299 GO:0000166(InterPro)
Cre04g0736 1355 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 550 828 IPR023299 GO:0000166(InterPro)
Cre04g0736 1355 SUPERFAMILY Calcium ATPase, transduction domain A 255 397 IPR008250 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0736 Cre-Chr4:25574941 Cre08g0793 Cre-Chr8:20983934 0.00E+00 dispersed
Cre04g0736 Cre-Chr4:25574941 Cre05g2653 Cre-Chr5:37514159 1.30E-193 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0736 K14802 - csv:101206692 2431.37