Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0742 ATGGCACAATCAATTGGATATGCTGAAACAGATCCATCTGGTCGCTATGGACGGTTTAGAGAAATTCTAGGCAAAGGAGCCATGAAAACAGTATATAAAGGGTTTGATGAGATGCTTGGAATTGAAGTAGCTTGGAATCAAATCCACCTCAAAGATGTCTTCCATTCCCCTCAAGAACTACAACGTCTATACTCAGAAATTCATCTCCTCAAGAACCTCGACCACGACTCGATCATCCGGTTCTACACTTCTTGGATCGATACTCATTGCCGAACGTTCAATTTCATCACCGAAATGTTCACCTCCGGCACCCTTAGAGAGTACCGACAAAAGTATCGAAACGTCAATATCGAAGCAATCAAGAATTGGGCTCGTCAAATCCTACAAGGTCTGGCTTATCTTCATGGACACGATCCACCCGTAATCCATAGAGACCTCAAGTGTGATAACGTATTTATCAACGGCCATCTCGGACTAGTTAAAATCGGTGACCTAGGACTTGCGACAATTCTTCATGATTCTAAATATGCCTATAGCGTCATAGGTACACCAGAATTCATGGCACCAGAGCTTTATGATGAGGAATATAATGAACTTGTGGATGTTTATTCTTTTGGGATGTGTATGATTGAGATGCTTACTTTGAAGTATCCTTATAGCGAGTGCTCTAACCCTGCTCAGATATACAAAAAAGTCACTTCAGGAAAATTGCCTAATGCATTCTATGAGATCAAAGATTTGGAGGCCCAAAGATTTGTAAGAAAATGTTTGGAGAATGTTTCAAAGAGGCTGCCTGCTAGAGAGCTCTTGCTTGATCCATTTCTAGCACCTAATTCCAACAATAACAATGCCTCTTATAATGAAGACTTACTGTCTTCATCTCTATCTCCAAAGAAATCAATGGCAAGAAGAACGCACATGGTTATTTCTGGATCAATGAATCCCAAGGATGATTCGGTTTTTCTAAAAGTGCATATCAAAGTGAATAACGGTAAATCTAAGAATGTATATTTTGCATTCGATACCAAAAACGACACCGCAATCGACGTTGCGACTGAGATGGTTAAAGAAGTGGAAATTATTAGTGATTGGGATCCATTGGAGATAGCTGTGATGATAAAGAAGGAGATATCCACATTGATTCCAGATTGGGAGGAATGGAAGTTACCCAAAAACCACCATCAAGATAGCTTCACCTATGAACAAGACCACAAGGACGACGACGACGATGACGATGATGACGAAAACCATGAAATACCACATCTTTTCTATTATTGTTGCTCCTCTCCTGCCTCCTCCTCAAATTCTCTTCGGGATTTCTACTCTTTAAAAGAGAGCCTCAATCATCATTATGGAGGAATGAAGGAAATTTCTACTACCACTGAATGGTTCCAAGAGGATGTTCTCAATAATATTGATGATGATACAAGTTCTAGTTGCTCTCTCAATTCCTTCAATTACTCTGATATAAGCTTTTACTCAAACAATGAAGATGAGTATGAATATGAATCAAATGTCAAAGGAAGTGAGCCTCAATACATCTCAACAGCCAAGCAACCTACAAGATTTTGCCCAACCATGAAGATAGACACACACCCTTTGAGGCAAAAGGACACCAAAAAAATGATCGATCGAGAAATATTCGAGAGTCGATCTCGATCAAATAACTCGCATAAGCTCATGAGAGTGAAATCAATGGTGAACCTCCGTAGCGAGACATTGCATCGGTCTTTAGTAGAGATGTTGTTGAAGAAGCGCTTGTTCAATACGGTGGGTGCAATGGAGAACATTGGATATCAAAAACCATAG 1809 39.97 MAQSIGYAETDPSGRYGRFREILGKGAMKTVYKGFDEMLGIEVAWNQIHLKDVFHSPQELQRLYSEIHLLKNLDHDSIIRFYTSWIDTHCRTFNFITEMFTSGTLREYRQKYRNVNIEAIKNWARQILQGLAYLHGHDPPVIHRDLKCDNVFINGHLGLVKIGDLGLATILHDSKYAYSVIGTPEFMAPELYDEEYNELVDVYSFGMCMIEMLTLKYPYSECSNPAQIYKKVTSGKLPNAFYEIKDLEAQRFVRKCLENVSKRLPARELLLDPFLAPNSNNNNASYNEDLLSSSLSPKKSMARRTHMVISGSMNPKDDSVFLKVHIKVNNGKSKNVYFAFDTKNDTAIDVATEMVKEVEIISDWDPLEIAVMIKKEISTLIPDWEEWKLPKNHHQDSFTYEQDHKDDDDDDDDDENHEIPHLFYYCCSSPASSSNSLRDFYSLKESLNHHYGGMKEISTTTEWFQEDVLNNIDDDTSSSCSLNSFNYSDISFYSNNEDEYEYESNVKGSEPQYISTAKQPTRFCPTMKIDTHPLRQKDTKKMIDREIFESRSRSNNSHKLMRVKSMVNLRSETLHRSLVEMLLKKRLFNTVGAMENIGYQKP 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25670752 25677081 + CrPI670011_04g007420.1 Cre04g0742 495046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0742 602 Gene3D Transferase(Phosphotransferase) domain 1 100 282 - -
Cre04g0742 602 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 5 597 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cre04g0742 602 ProSiteProfiles Protein kinase domain profile. 17 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g0742 602 Gene3D - 315 387 - -
Cre04g0742 602 SUPERFAMILY Protein kinase-like (PK-like) 19 441 IPR011009 -
Cre04g0742 602 CDD STKc_WNK 15 275 - -
Cre04g0742 602 FunFam Probable serine/threonine-protein kinase WNK1 2 98 - -
Cre04g0742 602 Gene3D Phosphorylase Kinase; domain 1 3 98 - -
Cre04g0742 602 FunFam probable serine/threonine-protein kinase WNK9 100 281 - -
Cre04g0742 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g0742 602 SMART serkin_6 17 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g0742 602 Pfam Protein kinase domain 21 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0742 Cre-Chr4:25670752 Cre06g1368 Cre-Chr6:7881587 2.30E-118 dispersed
Cre04g0742 Cre-Chr4:25670752 Cre02g2214 Cre-Chr2:35826417 4.60E-159 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64033 PF00069 Pkinase 8.60E-47 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0742 K08867 - csv:101207665 988.408