Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0748 ATGGAGAACAAAGGGGCTATCTTGATGGAACGTTATGAATTAGGAAGGCTGCTGGGGCAGGGGACCTTTGCCAAGGTTTACTATGCTAGAGACATTAAAACTGGCATGAGCGTGGCTATCAAAGTTATTGACAAAGAGAAGATCTTGAAGGTTGGAATGATTGATCAAATCAAGAGGGAGATCTCTGTCATGAGATTAGTTAAGCATCCCAACATCGTTGAGCTTTATGAGGTTATGGCAAGTAAAACTAAAATTTACTTTGTCATGGAATATGTCAAGGGCGGTGAGCTATTCAATAAGGTATCCAAAGGAAAGCTTAAAGAATCTGTTGCACGGAAATATTTTTGGCAGCTGATCAGTGCTGTTGATTATTGCCACAGTAGAGGGGTATGCCATCGGGATTTGAAGCCTGAAAATTTATTATTGGATGAACATGGTAATCTGAAGGTTTCTGATTTTGGGTTGAGTGCTCTTGCTGAATCTAAACGCCAAGATGGATTACTCCATACTACGTGCGGAACACCTGCTTATGTAGCTCCAGAAGTCATTAACAGGAGAGGTTACGATGGATGCAAAGCTGATATTTGGTCTTGTGGAGTGATTTTATTTGTTCTATTGGCCGGTTATCTCCCATTCAATGATCCTAATCTAATGGAGATGTATAAGAAGATTGGAAAAGGAGAATTTAAATTCCCCAACTGGTTTGCACCAGATGTGCGCAAGCTGTTGTCAAAGATTTTGGATCCTAACCCAAATACCAGGATATCTATTGCCAAAATAATGGCAAGTTCTTGGTTGAGGAGGGAGTTCAATGTGAAATCACAAATTAATGCAGAGGAAGTGAAAGAATTGGCTCCTTTGGACGTTGATGCAGTTTTTGTGTCTACAGCTGAGGACAGAGACTCCATTAGAAGAGAGCAGAAGCAAGAAATGGAAAAGCCATTGAATTTGAATGCTTTCGACATAATCTCCTTGTCATCAGGTTTTGATTTGTCAGGATTGTTCGAGGAGACTGATCTAAAGAAAGAAGTGAGATTCACATCAAACAAGCCTGCTTCCACGATCATCTCAAAACTGCAAGACATTGCGAAGGGCCTGAAATTGAAAATCAAGAAGAAAGACAGAGGCCTACTGAAGATTGAAGGGTGTAAGGAAGGTCGAAAAGGAGCCGTATGTATTGACGCAGAGATTTTTGAGGTTACCCCATCATTCCATATTGTGGAAATGAAGAAGTCAAACGGAGATACTTTGGAATATCGGAAGATAATGAAAGATGATATTAGACCTGCTCTGAAGGACATTGTCTGGACCTGGCAAGGCGAACAGCATCAGAGACGGCTCTTACAAGTAGAACAACAAGGACAAGAAGCTCAGCAACAGTCTTCTACTGATTCATTATAA 1401 40.76 MENKGAILMERYELGRLLGQGTFAKVYYARDIKTGMSVAIKVIDKEKILKVGMIDQIKREISVMRLVKHPNIVELYEVMASKTKIYFVMEYVKGGELFNKVSKGKLKESVARKYFWQLISAVDYCHSRGVCHRDLKPENLLLDEHGNLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRRGYDGCKADIWSCGVILFVLLAGYLPFNDPNLMEMYKKIGKGEFKFPNWFAPDVRKLLSKILDPNPNTRISIAKIMASSWLRREFNVKSQINAEEVKELAPLDVDAVFVSTAEDRDSIRREQKQEMEKPLNLNAFDIISLSSGFDLSGLFEETDLKKEVRFTSNKPASTIISKLQDIAKGLKLKIKKKDRGLLKIEGCKEGRKGAVCIDAEIFEVTPSFHIVEMKKSNGDTLEYRKIMKDDIRPALKDIVWTWQGEQHQRRLLQVEQQGQEAQQQSSTDSL 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25902013 25903413 - CrPI670011_04g007480.1 Cre04g0748 495052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0748 466 Pfam NAF domain 314 372 IPR004041 GO:0007165(InterPro)
Cre04g0748 466 CDD CIPK_C 318 432 - -
Cre04g0748 466 SMART serkin_6 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g0748 466 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
Cre04g0748 466 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
Cre04g0748 466 Gene3D Transferase(Phosphotransferase) domain 1 92 289 - -
Cre04g0748 466 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g0748 466 FunFam Non-specific serine/threonine protein kinase 2 287 - -
Cre04g0748 466 ProSiteProfiles NAF domain profile. 312 336 IPR018451 GO:0007165(InterPro)
Cre04g0748 466 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g0748 466 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Cre04g0748 466 Coils Coil 440 460 - -
Cre04g0748 466 Gene3D Kinase associated domain 1, KA1 311 437 - -
Cre04g0748 466 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Cre04g0748 466 FunFam Non-specific serine/threonine protein kinase 312 436 - -
Cre04g0748 466 CDD STKc_SnRK3 11 265 - -
Cre04g0748 466 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 425 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cre04g0748 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2217 Cre-Chr2:35851185 Cre04g0748 Cre-Chr4:25902013 6.80E-174 dispersed
Cre03g0960 Cre-Chr3:8448323 Cre04g0748 Cre-Chr4:25902013 1.50E-166 dispersed
Cre04g0748 Cre-Chr4:25902013 Cre06g2099 Cre-Chr6:28784355 1.40E-147 dispersed
Cre04g0746 Cre-Chr4:25774086 Cre04g0748 Cre-Chr4:25902013 9.40E-114 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64035 PF00069 Pkinase 2.50E-76 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0748 K07198 - csv:116406388 828.55