Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g0748 | ATGGAGAACAAAGGGGCTATCTTGATGGAACGTTATGAATTAGGAAGGCTGCTGGGGCAGGGGACCTTTGCCAAGGTTTACTATGCTAGAGACATTAAAACTGGCATGAGCGTGGCTATCAAAGTTATTGACAAAGAGAAGATCTTGAAGGTTGGAATGATTGATCAAATCAAGAGGGAGATCTCTGTCATGAGATTAGTTAAGCATCCCAACATCGTTGAGCTTTATGAGGTTATGGCAAGTAAAACTAAAATTTACTTTGTCATGGAATATGTCAAGGGCGGTGAGCTATTCAATAAGGTATCCAAAGGAAAGCTTAAAGAATCTGTTGCACGGAAATATTTTTGGCAGCTGATCAGTGCTGTTGATTATTGCCACAGTAGAGGGGTATGCCATCGGGATTTGAAGCCTGAAAATTTATTATTGGATGAACATGGTAATCTGAAGGTTTCTGATTTTGGGTTGAGTGCTCTTGCTGAATCTAAACGCCAAGATGGATTACTCCATACTACGTGCGGAACACCTGCTTATGTAGCTCCAGAAGTCATTAACAGGAGAGGTTACGATGGATGCAAAGCTGATATTTGGTCTTGTGGAGTGATTTTATTTGTTCTATTGGCCGGTTATCTCCCATTCAATGATCCTAATCTAATGGAGATGTATAAGAAGATTGGAAAAGGAGAATTTAAATTCCCCAACTGGTTTGCACCAGATGTGCGCAAGCTGTTGTCAAAGATTTTGGATCCTAACCCAAATACCAGGATATCTATTGCCAAAATAATGGCAAGTTCTTGGTTGAGGAGGGAGTTCAATGTGAAATCACAAATTAATGCAGAGGAAGTGAAAGAATTGGCTCCTTTGGACGTTGATGCAGTTTTTGTGTCTACAGCTGAGGACAGAGACTCCATTAGAAGAGAGCAGAAGCAAGAAATGGAAAAGCCATTGAATTTGAATGCTTTCGACATAATCTCCTTGTCATCAGGTTTTGATTTGTCAGGATTGTTCGAGGAGACTGATCTAAAGAAAGAAGTGAGATTCACATCAAACAAGCCTGCTTCCACGATCATCTCAAAACTGCAAGACATTGCGAAGGGCCTGAAATTGAAAATCAAGAAGAAAGACAGAGGCCTACTGAAGATTGAAGGGTGTAAGGAAGGTCGAAAAGGAGCCGTATGTATTGACGCAGAGATTTTTGAGGTTACCCCATCATTCCATATTGTGGAAATGAAGAAGTCAAACGGAGATACTTTGGAATATCGGAAGATAATGAAAGATGATATTAGACCTGCTCTGAAGGACATTGTCTGGACCTGGCAAGGCGAACAGCATCAGAGACGGCTCTTACAAGTAGAACAACAAGGACAAGAAGCTCAGCAACAGTCTTCTACTGATTCATTATAA | 1401 | 40.76 | MENKGAILMERYELGRLLGQGTFAKVYYARDIKTGMSVAIKVIDKEKILKVGMIDQIKREISVMRLVKHPNIVELYEVMASKTKIYFVMEYVKGGELFNKVSKGKLKESVARKYFWQLISAVDYCHSRGVCHRDLKPENLLLDEHGNLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRRGYDGCKADIWSCGVILFVLLAGYLPFNDPNLMEMYKKIGKGEFKFPNWFAPDVRKLLSKILDPNPNTRISIAKIMASSWLRREFNVKSQINAEEVKELAPLDVDAVFVSTAEDRDSIRREQKQEMEKPLNLNAFDIISLSSGFDLSGLFEETDLKKEVRFTSNKPASTIISKLQDIAKGLKLKIKKKDRGLLKIEGCKEGRKGAVCIDAEIFEVTPSFHIVEMKKSNGDTLEYRKIMKDDIRPALKDIVWTWQGEQHQRRLLQVEQQGQEAQQQSSTDSL | 466 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 25902013 | 25903413 | - | CrPI670011_04g007480.1 | Cre04g0748 | 495052 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g0748 | 466 | Pfam | NAF domain | 314 | 372 | IPR004041 | GO:0007165(InterPro) | |
Cre04g0748 | 466 | CDD | CIPK_C | 318 | 432 | - | - | |
Cre04g0748 | 466 | SMART | serkin_6 | 12 | 266 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre04g0748 | 466 | Gene3D | Phosphorylase Kinase; domain 1 | 2 | 91 | - | - | |
Cre04g0748 | 466 | ProSitePatterns | Protein kinases ATP-binding region signature. | 18 | 41 | IPR017441 | GO:0005524(InterPro) | |
Cre04g0748 | 466 | Gene3D | Transferase(Phosphotransferase) domain 1 | 92 | 289 | - | - | |
Cre04g0748 | 466 | Pfam | Protein kinase domain | 12 | 266 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre04g0748 | 466 | FunFam | Non-specific serine/threonine protein kinase | 2 | 287 | - | - | |
Cre04g0748 | 466 | ProSiteProfiles | NAF domain profile. | 312 | 336 | IPR018451 | GO:0007165(InterPro) | |
Cre04g0748 | 466 | ProSiteProfiles | Protein kinase domain profile. | 12 | 266 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre04g0748 | 466 | SUPERFAMILY | Protein kinase-like (PK-like) | 8 | 267 | IPR011009 | - | |
Cre04g0748 | 466 | Coils | Coil | 440 | 460 | - | - | |
Cre04g0748 | 466 | Gene3D | Kinase associated domain 1, KA1 | 311 | 437 | - | - | |
Cre04g0748 | 466 | FunFam | Non-specific serine/threonine protein kinase | 3 | 91 | - | - | |
Cre04g0748 | 466 | FunFam | Non-specific serine/threonine protein kinase | 312 | 436 | - | - | |
Cre04g0748 | 466 | CDD | STKc_SnRK3 | 11 | 265 | - | - | |
Cre04g0748 | 466 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 4 | 425 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Cre04g0748 | 466 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 130 | 142 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g2217 | Cre-Chr2:35851185 | Cre04g0748 | Cre-Chr4:25902013 | 6.80E-174 | dispersed | |
Cre03g0960 | Cre-Chr3:8448323 | Cre04g0748 | Cre-Chr4:25902013 | 1.50E-166 | dispersed | |
Cre04g0748 | Cre-Chr4:25902013 | Cre06g2099 | Cre-Chr6:28784355 | 1.40E-147 | dispersed | |
Cre04g0746 | Cre-Chr4:25774086 | Cre04g0748 | Cre-Chr4:25902013 | 9.40E-114 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64035 | PF00069 | Pkinase | 2.50E-76 | CL0016 | Cre | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g0748 | K07198 | - | csv:116406388 | 828.55 |