Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0769 ATGACGTCTGAGAATTCTAGTGGAGAAAAGACATCAAGAAAGAGGCGAAATGGGTATGTTTCTGTAGTGGACACTTTGAACAAGTGGAAGAAGTTGAACAATCAATTGGAGGATTTGGCAAAAGATGGAGTAGAAGAAATTCGTAGAGTTCCAGCCAAGGGCTCTAAGAAGGGTTGCATGAGAGGGAAAGGAGGTCCTCAGAATTCAGATTGTAATTTCAGAGGTGTTAGACAGAGGACTTGGGGAAAGTGGGTGGCTGAAATTAGAGAGCCAATTGCTAGTAATAATACCCGTGTGAAGAAGAAAGGCAGTCGTTTATGGCTTGGCACTTTTGCCACTGCTCATCAGGCTGCTCTTGCTTATGATGAAGCTGCTAAAGCCATGTATGGCCCTTTTGCCCGTCTTAATTTTCCTGATTCTTCATCTTCTCCTCTGAAACCAGTAATAGTAGAGCATTCTGATTCGATATCCCCAGTTGCTTCTTCCTCCTCGTCTTCTTCCATTTTCAATGGACTATCTGCAGAGAAAATGAACTGCTGTTATTCAATGGATAAGCAAGAGAATTGTGGGTATGAATCAATGGAGGAACTGAAGGTGAAAGTGGAAGAAACAGCAAGAAATAGAGTCAATTATACAGATGCTACATTTTATGATTCTAACATTGGTAACAGATTAACAGAAGGGAATATCAAGGAAGGATTAGCTGATGTTGTAAGAAGTCGTGATATTAATAGAGATAGCCATGATCAGAATGACCCTTCTGAGCTTTGTTTCAAATTTGAAGCTATGGATACAAATGGCTGCAATGACTTAAACGAATGCAATCAATATGTGCTACAGAAGTTTCAAAGTGATCCATATGCAAGAACTTACTGGATTCCGGCTGAGTGGGAGATCGGCGATCTTGGGTCCGCGCCGGTGATGGAAGGAAAGCCAATGGAGATAGAGAGCTATGGAGATTGTATGGCCTTCAACCGTGATCTGAGTTTGTTGCTGGATCGGCAAAAACACATGGGAGTTGGAGACCAAAGAGTTGATGATTGTAACTTCGAGTTTTTGAGACCTGATTATGATTTTGGGTTGGAGGAGGAACGCAAGTGGCTTGATTTATGGTTCCGTGGATGA 1125 41.96 MTSENSSGEKTSRKRRNGYVSVVDTLNKWKKLNNQLEDLAKDGVEEIRRVPAKGSKKGCMRGKGGPQNSDCNFRGVRQRTWGKWVAEIREPIASNNTRVKKKGSRLWLGTFATAHQAALAYDEAAKAMYGPFARLNFPDSSSSPLKPVIVEHSDSISPVASSSSSSSIFNGLSAEKMNCCYSMDKQENCGYESMEELKVKVEETARNRVNYTDATFYDSNIGNRLTEGNIKEGLADVVRSRDINRDSHDQNDPSELCFKFEAMDTNGCNDLNECNQYVLQKFQSDPYARTYWIPAEWEIGDLGSAPVMEGKPMEIESYGDCMAFNRDLSLLLDRQKHMGVGDQRVDDCNFEFLRPDYDFGLEEERKWLDLWFRG 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26258651 26259948 + CrPI670011_04g007690.1 Cre04g0769 495073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0769 374 SUPERFAMILY DNA-binding domain 72 140 IPR016177 GO:0003677(InterPro)
Cre04g0769 374 CDD AP2 71 140 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g0769 374 Gene3D AP2/ERF domain 72 139 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g0769 374 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 283 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Cre04g0769 374 ProSiteProfiles AP2/ERF domain profile. 72 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g0769 374 Pfam AP2 domain 72 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g0769 374 SMART rav1_2 72 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g0769 374 FunFam Ethylene-responsive transcription factor 2 71 139 - -
Cre04g0769 374 Coils Coil 194 214 - -
Cre04g0769 374 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g0769 374 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1424 Cre-Chr2:24861865 Cre04g0769 Cre-Chr4:26258651 7.40E-40 dispersed
Cre04g0769 Cre-Chr4:26258651 Cre05g2034 Cre-Chr5:32346683 5.30E-28 dispersed
Cre11g1080 Cre-Chr11:8259520 Cre04g0769 Cre-Chr4:26258651 2.10E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53413 PF00847 AP2 7.50E-15 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0769 - - - 0.0