Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0802 ATGGCTTCCCAAACAGAGCCTTGGCTAATGGAAAACGGAAGCCTCAAGCGTTTAACCAAAGAGCATCGACATGGCCATGGTCGAACAGCTCACAACATGTCGTCCTCTTCCTTACGCAAAAAGTCCGATCTAACCCTCGTCTCCAAAGTCCAATTCGGCTGTCTCCGCAAGTTTCTTATCAATCTTCAGGAGGTCATTTTGGGAACTAAACTTTCCATTCTCTTCCCTGCGATTCCGCTTGCTATTGTCGCTCAGAGTTTTGGCTTTGGAAGACCTTGGATTTTTGCATTAAGCTTGCTTGGCCTCACGCCATTGGCTGAACGTGTCAGCTTTCTGACCGAGCAAATCGCTTATTTCACTGGCCCAACAGTTGGGGGGCTTTTGAATGCAACATGTGGAAATGCAACGGAGCTGATAATTGCAATTCTTGCACTGACACAAAGAAAGATAGACGTGGTGAAGTATTCTCTTTTGGGTTCTGTTCTTTCAAACCTTCTTCTTGTTCTTGGAACCTCTCTCTTTTGTGGTGGCATTGCAAATCTTAGAAGGGAGCAGAATTATGACAGAAGGCAAGCTGATGTCAACTCCCTGATGCTGATGCTTTCGTTACTGTGCCACCTATTGCCGTTATTGTTTGGCTACGCCGCCGCCTCCTCCTCCGCCTCCACGGCCGCCGCCTCCACCCTCCACCTGTCCAGAGCCAGCAGCATTGTAATGCTCTCCGCTTACATTGCTTACTTGGTCTTCCAACTTTGGACTCATCGACAACTATTTGAAGCCGAGGAAGCTGAAGACGACGACGCTCCTGAAGAAGAGGCAGTGATTGGATTCTGGAGCGCATTTGCATGGCTTGCAGGAATGACACTCCTTATTGCTTTGCTGTCCGAATACGTTGTCAACACAATTGAGGAAGCATCTACTACTTGGGGTTTGTCAGTGAGTTTCCTTAGCATAATCTTGCTCCCTATAGTCGGAAATGCGGCCGAACACGCCGGGGCTATCATATTTGCCTTCAAGAATAAGTTGGACATATCTTTAGGGGTTGCTTTGGGATCTGCAACACAAATTGCACTGTTTGTGATTCCACTTTGTGTGATAGTTGCTTGGACAATGGGAGTGGACATGGACCTGAATTTCAACCTGATGGAAACAGGGTCACTTGGATTAGCCATTATTGCCACAGCCTTCACTTTACAAGATGGAACCTCTCACTATATTAAAGGCCTTGTTCTTCTTCTTTGCTACATTATCATTGCTGCTTGCTTCTTTGTTTCCAAGACACAAGAAGATAATGACAATACTCCCAACTTGAGACTCCAATCTTCAAACCAAGCAATCTTCAGAGCTTAA 1350 46.22 MASQTEPWLMENGSLKRLTKEHRHGHGRTAHNMSSSSLRKKSDLTLVSKVQFGCLRKFLINLQEVILGTKLSILFPAIPLAIVAQSFGFGRPWIFALSLLGLTPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATELIIAILALTQRKIDVVKYSLLGSVLSNLLLVLGTSLFCGGIANLRREQNYDRRQADVNSLMLMLSLLCHLLPLLFGYAAASSSASTAAASTLHLSRASSIVMLSAYIAYLVFQLWTHRQLFEAEEAEDDDAPEEEAVIGFWSAFAWLAGMTLLIALLSEYVVNTIEEASTTWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIALFVIPLCVIVAWTMGVDMDLNFNLMETGSLGLAIIATAFTLQDGTSHYIKGLVLLLCYIIIAACFFVSKTQEDNDNTPNLRLQSSNQAIFRA 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26701840 26707458 + CrPI670011_04g008020.1 Cre04g0802 495106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0802 449 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 23 427 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Cre04g0802 449 NCBIfam calcium/proton exchanger 76 423 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Cre04g0802 449 Pfam Sodium/calcium exchanger protein 93 252 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0802 449 Pfam Sodium/calcium exchanger protein 280 423 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0802 449 FunFam Vacuolar cation/proton exchanger 122 268 - -
Cre04g0802 449 FunFam Vacuolar cation/proton exchanger 269 424 - -
Cre04g0802 449 Gene3D - 122 274 IPR044880 -
Cre04g0802 449 Gene3D - 275 424 IPR044880 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0802 K07300 - - csv:101213857 783.097
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1361 Cre-Chr2:21588448 Cre04g0802 Cre-Chr4:26701840 1.40E-93 transposed
Cre07g1780 Cre-Chr7:33261431 Cre04g0802 Cre-Chr4:26701840 2.10E-91 transposed
Cre10g0647 Cre-Chr10:6088277 Cre04g0802 Cre-Chr4:26701840 2.00E-93 transposed
Cre10g2310 Cre-Chr10:37336169 Cre04g0802 Cre-Chr4:26701840 2.30E-162 wgd
Cre03g0393 Cre-Chr3:2385772 Cre04g0802 Cre-Chr4:26701840 2.70E-131 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g893 Blo01g01049 . Bda01g00159 . . . . . Cmo06g00224 . Cma03g00349 Cma07g01054 Car03g00308 Car07g01042 Sed01g1162 Cpe10g00953 Cpe08g01222 Bhi03g02143 Tan03g0788 Cmetu08g1189 . Hepe04g0753 . . Cla04g00705 Cam04g0714 Cec04g0836 Cco04g0890 Clacu04g0759 Cmu04g0749 Cre04g0802 Cone3ag0420 Cone10ag0385 . . . Csa04g01618 Chy08g00634 Cme04g02718 . . . . . Bpe02g00905 Bma01g01790 . . Cmo03g00362 Cmo07g01105 . . . . . Cpe19g00283 Bhi11g01839 . . . Hepe05g0092 . . Cla10g02088 Cam10g2167 Cec10g2206 Cco10g2192 Clacu10g2169 Cmu10g2909 Cre10g2310 Lsi03g02209 Csa03g03075 Chy04g02251 Cme08g02585
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre04g1940 . 1 409 Antiporters AT5G46110 79.5 9.3e-175 610.1
Cre05g2545 . 51 415 Antiporters AT5G46110 74.2 1.6e-147 519.6
Cre10g0767 . 41 395 Antiporters AT5G54800 79.7 6.0e-160 560.8
Cre05g1573 . 1 395 Antiporters AT5G54800 73.2 1.1e-158 556.6
Cre04g1827 . 1 391 Antiporters AT5G54800 72.7 5.1e-151 531.2
Cre01g0543 . 51 394 Antiporters AT3G01550 64.9 1.1e-121 433.7
Cre01g1262 . 53 417 Antiporters AT3G01550 59.5 1.6e-112 403.3
Cre01g1262 . 1 419 Antiporters AT5G33320 72.4 1.2e-155 546.6
Cre01g0543 . 69 397 Antiporters AT5G33320 61.2 1.7e-109 393.3
Cre04g1827 . 46 388 Antiporters AT1G61800 82.3 1.7e-160 562.8
Cre05g1573 . 1 396 Antiporters AT1G61800 72.9 4.9e-160 561.2
Cre10g0767 . 39 396 Antiporters AT1G61800 78.2 1.0e-157 553.5
Cre05g0332 . 106 405 Antiporters AT1G61800 52.6 1.4e-85 313.9
Cre05g0332 . 48 417 Antiporters AT5G17630 75.7 3.6e-150 528.5
Cre05g1573 . 81 394 Antiporters AT5G17630 53.9 7.1e-90 328.2
Cre04g1827 . 92 389 Antiporters AT5G17630 54.2 3.5e-89 325.9
Cre10g0767 . 89 394 Antiporters AT5G17630 53.7 7.8e-89 324.7
Cre10g0647 . 93 462 Antiporters AT3G13320 80.5 2.3e-163 572.4
Cre02g1361 . 79 457 Antiporters AT3G13320 76.6 1.2e-156 550.1
Cre07g1780 . 156 525 Antiporters AT3G13320 75.7 1.9e-154 542.7
Cre04g0802 . 5 431 Antiporters AT2G38170 71.6 8.4e-164 573.9
Cre10g2310 . 13 423 Antiporters AT2G38170 64.0 5.9e-141 498.0
Cre03g0393 . 32 394 Antiporters AT2G38170 61.7 1.0e-121 434.1
Cre04g0802 . 1 399 Antiporters AT3G51860 72.4 9.5e-152 533.9
Cre10g2310 . 9 399 Antiporters AT3G51860 65.6 8.6e-137 484.2
Cre03g0393 . 32 370 Antiporters AT3G51860 65.7 4.0e-118 422.2
Cre02g1361 . 71 424 Antiporters AT3G51860 50.4 2.1e-82 303.5
Cre10g0647 . 93 433 Antiporters AT3G51860 51.3 2.7e-82 303.1
Cre07g1780 . 162 493 Antiporters AT3G51860 50.1 1.4e-78 290.8
Cre04g0802 . 34 436 Antiporters AT5G01490 62.4 1.9e-136 483.0
Cre10g2310 . 34 426 Antiporters AT5G01490 62.5 1.6e-132 469.9
Cre03g0393 . 26 396 Antiporters AT5G01490 57.2 2.6e-114 409.5
Cre10g0647 . 92 462 Antiporters AT1G55720 76.3 3.5e-151 531.9
Cre02g1361 . 79 453 Antiporters AT1G55720 73.7 1.7e-145 513.1
Cre07g1780 . 156 522 Antiporters AT1G55720 71.4 1.8e-139 493.0
Cre10g0647 . 92 462 Antiporters AT1G55730 80.9 4.6e-164 574.7
Cre02g1361 . 61 453 Antiporters AT1G55730 74.4 2.9e-158 555.4
Cre07g1780 . 156 526 Antiporters AT1G55730 76.3 7.8e-156 547.4
Cre04g0802 . 65 432 Antiporters AT1G55730 51.3 1.1e-96 350.9
Cre03g1911 . 4 534 Antiporters AT5G27150 77.6 1.5e-233 805.8
Cre06g1300 . 97 602 Antiporters AT5G27150 74.8 1.5e-217 752.7
Cre09g0604 . 107 632 Antiporters AT5G27150 67.3 5.0e-197 684.5
Cre01g0381 . 12 517 Antiporters AT5G27150 60.4 8.3e-168 587.4
Cre06g1300 . 97 611 Antiporters AT3G06370 71.9 6.9e-210 727.2
Cre03g1911 . 5 533 Antiporters AT3G06370 70.6 1.6e-206 716.1
Cre09g0604 . 107 632 Antiporters AT3G06370 63.7 4.0e-181 631.7
Cre01g0381 . 5 517 Antiporters AT3G06370 59.1 1.2e-161 567.0
Cre01g0381 . 1 524 Antiporters AT5G55470 69.5 7.1e-212 733.8
Cre03g1911 . 18 520 Antiporters AT5G55470 60.2 1.1e-169 593.6
Cre06g1300 . 94 589 Antiporters AT5G55470 58.7 2.6e-166 582.4
Cre09g0604 . 100 619 Antiporters AT5G55470 53.5 7.7e-150 527.7
Cre03g1911 . 10 537 Antiporters AT3G05030 78.8 1.0e-237 819.7
Cre06g1300 . 97 602 Antiporters AT3G05030 75.6 5.4e-223 770.8
Cre09g0604 . 107 632 Antiporters AT3G05030 67.0 6.0e-198 687.6
Cre01g0381 . 12 517 Antiporters AT3G05030 59.6 3.8e-168 588.6
Cre07g1645 . 102 667 Antiporters AT1G15460 70.4 1.8e-229 792.3
Cre09g2018 . 104 674 Antiporters AT1G15460 69.4 2.2e-227 785.4
Cre08g1251 . 119 679 Antiporters AT1G15460 64.5 2.0e-215 745.7
Cre10g1327 . 102 645 Antiporters AT1G15460 59.0 1.7e-179 626.3
Cre01g1263 . 102 644 Antiporters AT1G15460 57.2 8.9e-176 614.0
Cre10g1327 . 3 709 Antiporters AT3G06450 69.8 6.6e-293 1003.4
Cre01g1263 . 3 683 Antiporters AT3G06450 69.5 5.3e-282 967.2
Cre09g2018 . 10 657 Antiporters AT3G06450 55.6 1.5e-215 746.5
Cre07g1645 . 6 647 Antiporters AT3G06450 56.2 4.2e-215 745.0
Cre08g1251 . 23 658 Antiporters AT3G06450 56.1 4.2e-215 745.0
Cre10g1327 . 1 716 Antiporters AT2G47160 79.0 0.0e+00 1151.7
Cre01g1263 . 1 670 Antiporters AT2G47160 74.6 1.3e-304 1042.3
Cre07g1645 . 1 647 Antiporters AT2G47160 56.5 3.2e-215 745.3
Cre08g1251 . 24 658 Antiporters AT2G47160 57.2 5.5e-215 744.6
Cre09g2018 . 10 657 Antiporters AT2G47160 56.7 2.7e-214 742.3
Cre07g1645 . 1 667 Antiporters AT1G74810 69.6 2.4e-276 948.3
Cre09g2018 . 10 678 Antiporters AT1G74810 69.1 1.6e-272 935.6
Cre08g1251 . 24 680 Antiporters AT1G74810 65.2 2.3e-255 878.6
Cre10g1327 . 7 645 Antiporters AT1G74810 59.6 1.3e-218 756.5
Cre01g1263 . 7 644 Antiporters AT1G74810 58.4 9.4e-217 750.4
Cre10g1327 . 1 708 Antiporters AT3G62270 81.4 0.0e+00 1155.2
Cre01g1263 . 1 694 Antiporters AT3G62270 76.1 1.3e-309 1058.9
Cre08g1251 . 24 658 Antiporters AT3G62270 58.8 5.0e-221 764.6
Cre07g1645 . 1 647 Antiporters AT3G62270 58.0 1.1e-217 753.4
Cre09g2018 . 10 657 Antiporters AT3G62270 58.6 3.3e-217 751.9
Cre08g1251 . 24 677 Antiporters AT4G32510 68.6 2.0e-264 908.7
Cre07g1645 . 1 664 Antiporters AT4G32510 65.4 9.2e-257 883.2
Cre09g2018 . 2 674 Antiporters AT4G32510 65.0 1.7e-255 879.0
Cre01g1263 . 1 650 Antiporters AT4G32510 54.3 1.1e-206 716.8
Cre10g1327 . 1 645 Antiporters AT4G32510 54.9 3.3e-206 715.3
Cre08g1251 . 24 675 Antiporters AT5G25430 70.2 5.4e-265 910.6
Cre07g1645 . 2 664 Antiporters AT5G25430 65.2 1.5e-246 849.4
Cre09g2018 . 10 674 Antiporters AT5G25430 64.7 8.0e-245 843.6
Cre10g1327 . 7 645 Antiporters AT5G25430 56.1 2.1e-205 712.6
Cre01g1263 . 7 656 Antiporters AT5G25430 54.7 2.2e-202 702.6
Cre09g1843 . 27 1144 Antiporters AT2G01980 66.4 0.0e+00 1392.1
Cre09g1843 . 20 738 Antiporters AT1G14660 66.2 1.0e-272 936.4
Cre08g1640 . 57 563 Antiporters AT5G11800 86.1 1.1e-234 809.7
Cre03g1838 . 19 587 Antiporters AT5G11800 75.4 9.1e-224 773.5
Cre05g0933 . 57 563 Antiporters AT5G11800 69.9 2.3e-187 652.5
Cre05g0933 . 31 565 Antiporters AT5G51710 82.4 9.2e-242 833.2
Cre08g1640 . 55 560 Antiporters AT5G51710 70.8 5.8e-188 654.4
Cre03g1838 . 51 560 Antiporters AT5G51710 68.8 7.4e-183 637.5
Cre03g1838 . 39 584 Antiporters AT2G19600 80.7 7.1e-229 790.4
Cre08g1640 . 48 563 Antiporters AT2G19600 82.4 2.8e-225 778.5
Cre05g0933 . 35 563 Antiporters AT2G19600 67.5 1.1e-181 633.6
Cre05g1200 . 172 587 Antiporters AT1G49810 76.6 2.0e-177 619.0
Cre05g1200 . 25 605 Antiporters AT3G19490 76.5 2.8e-246 848.2
Cre10g1103 . 83 577 Antiporters AT5G64280 67.3 5.6e-196 681.0
Cre10g1103 . 1 577 Antiporters AT5G64290 70.3 2.3e-216 748.8
Cre07g0604 . 3 379 Antiporters AT4G28390 81.5 6.5e-175 610.5
Cre08g1549 . 80 466 Antiporters AT4G28390 73.8 1.2e-157 553.1
Cre01g1494 . 5 307 Antiporters AT4G28390 62.9 1.1e-108 390.6
Cre08g1549 . 78 467 Antiporters AT3G08580 78.4 1.1e-169 593.2
Cre07g0604 . 1 378 Antiporters AT3G08580 72.5 1.1e-150 530.0
Cre01g1494 . 7 307 Antiporters AT3G08580 57.3 1.2e-96 350.5
Cre08g1549 . 78 467 Antiporters AT5G13490 81.9 4.0e-180 627.9
Cre07g0604 . 8 378 Antiporters AT5G13490 79.8 7.5e-163 570.5
Cre01g1494 . 8 307 Antiporters AT5G13490 61.1 1.4e-105 380.2
Cre01g1494 . 4 301 Antiporters AT5G17400 79.9 5.1e-138 487.6
Cre07g0604 . 79 365 Antiporters AT5G17400 64.5 1.3e-109 393.3
Cre08g1549 . 167 458 Antiporters AT5G17400 62.7 1.2e-107 386.7
Cre03g1954 . 4 542 Antiporters AT1G08960 65.6 3.8e-184 641.7
Cre10g1718 . 98 622 Antiporters AT5G17850 52.0 1.5e-148 523.5
Cre10g1256 . 11 547 Antiporters AT2G47600 71.1 4.5e-214 741.1
Cre07g1665 . 1 300 Antiporters AT1G79900 68.4 1.8e-116 416.0
Cre09g0198 . 125 424 Antiporters AT1G79900 67.4 3.6e-112 401.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001241 1 5 1 1 1 2 4 3 2 3 3 3 4 3 3 5 2 2 4 2 3 3 2 2 2 1 2 3 2 2 76