Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0802 ATGGCTTCCCAAACAGAGCCTTGGCTAATGGAAAACGGAAGCCTCAAGCGTTTAACCAAAGAGCATCGACATGGCCATGGTCGAACAGCTCACAACATGTCGTCCTCTTCCTTACGCAAAAAGTCCGATCTAACCCTCGTCTCCAAAGTCCAATTCGGCTGTCTCCGCAAGTTTCTTATCAATCTTCAGGAGGTCATTTTGGGAACTAAACTTTCCATTCTCTTCCCTGCGATTCCGCTTGCTATTGTCGCTCAGAGTTTTGGCTTTGGAAGACCTTGGATTTTTGCATTAAGCTTGCTTGGCCTCACGCCATTGGCTGAACGTGTCAGCTTTCTGACCGAGCAAATCGCTTATTTCACTGGCCCAACAGTTGGGGGGCTTTTGAATGCAACATGTGGAAATGCAACGGAGCTGATAATTGCAATTCTTGCACTGACACAAAGAAAGATAGACGTGGTGAAGTATTCTCTTTTGGGTTCTGTTCTTTCAAACCTTCTTCTTGTTCTTGGAACCTCTCTCTTTTGTGGTGGCATTGCAAATCTTAGAAGGGAGCAGAATTATGACAGAAGGCAAGCTGATGTCAACTCCCTGATGCTGATGCTTTCGTTACTGTGCCACCTATTGCCGTTATTGTTTGGCTACGCCGCCGCCTCCTCCTCCGCCTCCACGGCCGCCGCCTCCACCCTCCACCTGTCCAGAGCCAGCAGCATTGTAATGCTCTCCGCTTACATTGCTTACTTGGTCTTCCAACTTTGGACTCATCGACAACTATTTGAAGCCGAGGAAGCTGAAGACGACGACGCTCCTGAAGAAGAGGCAGTGATTGGATTCTGGAGCGCATTTGCATGGCTTGCAGGAATGACACTCCTTATTGCTTTGCTGTCCGAATACGTTGTCAACACAATTGAGGAAGCATCTACTACTTGGGGTTTGTCAGTGAGTTTCCTTAGCATAATCTTGCTCCCTATAGTCGGAAATGCGGCCGAACACGCCGGGGCTATCATATTTGCCTTCAAGAATAAGTTGGACATATCTTTAGGGGTTGCTTTGGGATCTGCAACACAAATTGCACTGTTTGTGATTCCACTTTGTGTGATAGTTGCTTGGACAATGGGAGTGGACATGGACCTGAATTTCAACCTGATGGAAACAGGGTCACTTGGATTAGCCATTATTGCCACAGCCTTCACTTTACAAGATGGAACCTCTCACTATATTAAAGGCCTTGTTCTTCTTCTTTGCTACATTATCATTGCTGCTTGCTTCTTTGTTTCCAAGACACAAGAAGATAATGACAATACTCCCAACTTGAGACTCCAATCTTCAAACCAAGCAATCTTCAGAGCTTAA 1350 46.22 MASQTEPWLMENGSLKRLTKEHRHGHGRTAHNMSSSSLRKKSDLTLVSKVQFGCLRKFLINLQEVILGTKLSILFPAIPLAIVAQSFGFGRPWIFALSLLGLTPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATELIIAILALTQRKIDVVKYSLLGSVLSNLLLVLGTSLFCGGIANLRREQNYDRRQADVNSLMLMLSLLCHLLPLLFGYAAASSSASTAAASTLHLSRASSIVMLSAYIAYLVFQLWTHRQLFEAEEAEDDDAPEEEAVIGFWSAFAWLAGMTLLIALLSEYVVNTIEEASTTWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIALFVIPLCVIVAWTMGVDMDLNFNLMETGSLGLAIIATAFTLQDGTSHYIKGLVLLLCYIIIAACFFVSKTQEDNDNTPNLRLQSSNQAIFRA 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26701840 26707458 + CrPI670011_04g008020.1 Cre04g0802 495106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0802 449 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 23 427 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Cre04g0802 449 NCBIfam calcium/proton exchanger 76 423 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Cre04g0802 449 Pfam Sodium/calcium exchanger protein 93 252 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0802 449 Pfam Sodium/calcium exchanger protein 280 423 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0802 449 FunFam Vacuolar cation/proton exchanger 122 268 - -
Cre04g0802 449 FunFam Vacuolar cation/proton exchanger 269 424 - -
Cre04g0802 449 Gene3D - 122 274 IPR044880 -
Cre04g0802 449 Gene3D - 275 424 IPR044880 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1361 Cre-Chr2:21588448 Cre04g0802 Cre-Chr4:26701840 1.40E-93 transposed
Cre07g1780 Cre-Chr7:33261431 Cre04g0802 Cre-Chr4:26701840 2.10E-91 transposed
Cre10g0647 Cre-Chr10:6088277 Cre04g0802 Cre-Chr4:26701840 2.00E-93 transposed
Cre10g2310 Cre-Chr10:37336169 Cre04g0802 Cre-Chr4:26701840 2.30E-162 wgd
Cre03g0393 Cre-Chr3:2385772 Cre04g0802 Cre-Chr4:26701840 2.70E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0802 K07300 - csv:101213857 783.097