Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0814 ATGGCCACCGCCGCCGCAACCTCTTCCTTCATCGGAACACGCCTCGCCGAATTACGGCCGAGTTCCGGTCGAGTCCAAGCCCGATTCGGATTCGGGAAGAAGAAGACTCCGGCGAAGAAATCGCCGTCGTCGAAGACGATATCCGACCGGCCGTTGTGGTTTCCGGGAGCAAAGGCGCCGGAATGGCTGGACGGAAGCTTGGTCGGGGACTACGGATTCGATCCGTTCGGGTTGGGGAAACCGGCAGAGTATTTGCAGTATGATTTGGACTCGTTGGACCAGAACTTGGCGAAGAATGTGGCGGGAGATATTATCGGGACGAGATTTGAGAGCGCGGAAGTGAAATCGACCCCGTTTCAGCCGTACACGGAGGTTTTTGGATTGCAGAGATTCCGCGAGTGCGAGCTAATCCATGGAAGGTGGGCAATGCTTGCCACACTCGGTGCTCTCTCTGTTGAATGGCTCACCGGTGTCACGTGGCAAGACGCCGGAAAAGTAGAACTAGTGGAAGGTTCATCCTACCTAGGGCAGCCACTTCCCTTCTCCCTCACCACGCTGATTTGGATCGAAGTTCTAGTGATCGGTTACATCGAGTTTCAAAGGAATGCGGAGTTAGACCCAGAGAAGAGGTTGTATCCAGGAGGCAAGTATTTCGACCCCTTGGGCTTAGCCGAGGACCCCGAAAAGAAAGCCGTCCTACAGTTGGCCGAGATCAAGCACGCTCGCCTAGCCATGGTTGCCTTCCTTGGGTTCGCAGTTCAGGCTGCTGTTACTGGCAAAGGCCCACTCAACAACTGGGCTACCCATCTCAGTGACCCTCTCCACACCACTATTATTGACAACTTCTCTTCTTCTTCTTCTTCTTAA 867 54.44 MATAAATSSFIGTRLAELRPSSGRVQARFGFGKKKTPAKKSPSSKTISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSSSSSS 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26817728 26820004 - CrPI670011_04g008140.1 Cre04g0814 495118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0814 288 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 5 279 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cre04g0814 288 Pfam Chlorophyll A-B binding protein 59 255 IPR022796 -
Cre04g0814 288 Gene3D Chlorophyll a/b binding protein domain 53 288 - -
Cre04g0814 288 SUPERFAMILY Chlorophyll a-b binding protein 44 284 - -
Cre04g0814 288 FunFam Chlorophyll a-b binding protein, chloroplastic 108 284 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0412 Cre-Chr1:3497783 Cre04g0814 Cre-Chr4:26817728 3.90E-40 dispersed
Cre04g0814 Cre-Chr4:26817728 Cre10g2308 Cre-Chr10:37320106 1.10E-134 dispersed
Cre04g0814 Cre-Chr4:26817728 Cre04g2048 Cre-Chr4:37721756 3.80E-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0814 K08915 - csv:101208740 543.502