Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0825 ATGATTGTTTCCATGGACTTAAATGCCTCGCCGGTGCCTGAAGAGGATGAAGAGACGTTTGAGAGGCATGAAGAGGTGTATAGTGCTCCAGAGGAACATATAGAGACTGCTGTAAGCATAGCACGGCGGGAGCGAGAAGAAAGAAAAAGGCGGTTGAAAAGAGATCGCTCTCTCGAGAGACCGGTGCATGAATACCAGCAACCTGCACGGGATCAGTTTTACCCTTCTAAAAACCAAAAATCTGATAGAAACAGGCTTCCTCCAGGTTGGTTGGATTGCCCTGCATTTGGTCAAGAAATATGTTGCATGATTCCGTCCAAGGTTCCTCTGGGCGAATCCTTCAATGATTGTATAACACCTGGTAAAAGATACTCATTTAAGCAAGTGATCCATCAGCAGAGAGTTTGGGGAAGAAAACTCGGTTTGGTGATCGATTTGACAAATTCTTTTCGTTATTATACAACAGCAGATTTGAATAAGGAGGGTATCAAGTATGTTAAGATTCCTTGCAAGGGGAGGGATTCCGTACCTGACAACAAGTCAGTCAATATGTTTGTTTACGAGGTCATGCAGTTCCTATCTCGTCAGAAACACTCGAAGAAGTATATTCTTGTCCATTGTACGCATGGCCATAATCGCACTGGATATATGATCATAAATTATCTCGTGCGTGCACTGTCCATTTCTGTTACCCAGGCTCTTAAAATGTTTGCTGATGCACGCCCTCCTGGAATTTACAAGCCAGACTACGTTGATGCATTATATACCTTTTACCATGAAAGAAAACCTGAAGCAGTTGTTTGTCCATCCACGCCTGAGTGGAAGAGATCTTCAGATCTTGATCTTAATGGCGAAGCAGTTCCAGATGATGATGATGATGGAGGTCCTGCTGCTCCTTTGAATGAAAATCATGATGATGGTGCTCAAGTGATGACAAATGATGATATTTTGGGTGATGAGATACCTGAGGACCAAGAACGTGCTTTGAAACAATTTTGCTATCAAATGCTTAAATTGAATGCTGGAGCAAGAGCAAATTTGCAATTTCCTGGGTCGCATCCAGTGTCTCTTAACAGAGACAATCTTCAACTGCTAAGGCAACGCTATTATTATGCCACATGGAAAGCTGATGGAACAAGATACATGATGCTAATTACCATGGATGGATGCTACTTGATTGACAGGGGTTTTAAATTTCGAAGAGTCCAAATGAGATTCCCATACAGAAATGCAAATGATGGCCAAGGTGAGAAGATTCACCACTATACACTACTTGATGGAGAAATGATTATTGATACTATGCCAGACTCGCAGAAGCAAGAGAGAAGATATCTTATATATGATATGATGACAATTAATCATGTTCCGGTCATTGAGCGTCCTTTCTATGAGCGGTGGAAGATGCTTGAAAAAGAAGTGATCGAACCTCGCAATTCTGAGCGCCAGAGTATTTACCAAAGCAGGAACCCTCATTATAGATATGACCTAGAGCCATTCAGGGTGAGGAGAAAAGATTTTTGGTTGCTCTCCACGGTTACCAAACTTTTGAAGGAGTTCATACCTAGGCTTTCACATGATGCTGATGGTCTGATATTTCAGGGGTGGGATGATGCTTATGTTCCTCGAACTCATGAGGGTCTTTTAAAGTGGAAATATCCAGAAATGAACTCAGTCGACTTCCTATTCGAGTTGGGTGAAGATGATTCTGAGGTTCTTATTTTGTTTGAACGAGGAAAGAGGAAGACCATGGAAGGAAATAGGGTTAAGTTCAAAGATGGGGATCCCTCCTTTTATTCAGGAAAGATTGTCGAGTGCTCTTGGGATTCTGATGAGCAAGTATGGGTCTGCATGCGTATCAGGACAGACAAAACAACTCCTAATGATTTCAATACTTATAAAAAGGTCATGCGGAGCATTAGAGACAATATCACGGAGGAGGATTTGTTGAAAGAGATTCATGAGATCATACGCTTGCCCATGTATGCAGATAGGATAAGGATTGATAGTAAAGCAGCTCAACATACGAATTCAACACGACGGAGGGTGACCAAGATGTCCGCCATTAGCTTCTTCTCCTTTGTGCTATCCTTTAGTGTGTGCAGAGCTGAATGGAAAGATGTTAAGTTCCAATCACATGCTTCATTTTGTTCGTTTCTGTGGCAAAACAAGCATGTTTATTTGCATTCTCATCCTCGAGATTACTTGGCTTATAACAAGAGAAGCGTTTTCTATGAGAATGGAGATGCAAGTTTCGGTCATATGGCTTGCGGAAAGACGCCACTGCAGTTGGATTACACGGATCCTTTTTGGGGGTTTTGGCAATTTGATGTTGTTGGCTTTGCGTTTCATCTTGCGGAGTCTCGTTTGAGGGTCTCCCAGGGCTTCGTTCCCTCAATTTCCATTGATCTTTGA 2412 42.21 MIVSMDLNASPVPEEDEETFERHEEVYSAPEEHIETAVSIARREREERKRRLKRDRSLERPVHEYQQPARDQFYPSKNQKSDRNRLPPGWLDCPAFGQEICCMIPSKVPLGESFNDCITPGKRYSFKQVIHQQRVWGRKLGLVIDLTNSFRYYTTADLNKEGIKYVKIPCKGRDSVPDNKSVNMFVYEVMQFLSRQKHSKKYILVHCTHGHNRTGYMIINYLVRALSISVTQALKMFADARPPGIYKPDYVDALYTFYHERKPEAVVCPSTPEWKRSSDLDLNGEAVPDDDDDGGPAAPLNENHDDGAQVMTNDDILGDEIPEDQERALKQFCYQMLKLNAGARANLQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRGFKFRRVQMRFPYRNANDGQGEKIHHYTLLDGEMIIDTMPDSQKQERRYLIYDMMTINHVPVIERPFYERWKMLEKEVIEPRNSERQSIYQSRNPHYRYDLEPFRVRRKDFWLLSTVTKLLKEFIPRLSHDADGLIFQGWDDAYVPRTHEGLLKWKYPEMNSVDFLFELGEDDSEVLILFERGKRKTMEGNRVKFKDGDPSFYSGKIVECSWDSDEQVWVCMRIRTDKTTPNDFNTYKKVMRSIRDNITEEDLLKEIHEIIRLPMYADRIRIDSKAAQHTNSTRRRVTKMSAISFFSFVLSFSVCRAEWKDVKFQSHASFCSFLWQNKHVYLHSHPRDYLAYNKRSVFYENGDASFGHMACGKTPLQLDYTDPFWGFWQFDVVGFAFHLAESRLRVSQGFVPSISIDL 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26966267 26986104 - CrPI670011_04g008250.1 Cre04g0825 495129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0825 803 CDD Adenylation_mRNA_capping 324 552 IPR001339 GO:0004484(InterPro)|GO:0005524(InterPro)|GO:0006370(InterPro)
Cre04g0825 803 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 86 275 IPR029021 -
Cre04g0825 803 Gene3D DNA ligase/mRNA capping enzyme 312 549 - -
Cre04g0825 803 SUPERFAMILY Nucleic acid-binding proteins 554 665 IPR012340 -
Cre04g0825 803 Pfam mRNA capping enzyme, C-terminal domain 581 649 IPR013846 -
Cre04g0825 803 Gene3D Protein tyrosine phosphatase superfamily 82 294 IPR029021 -
Cre04g0825 803 MobiDBLite consensus disorder prediction 22 66 - -
Cre04g0825 803 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 183 252 IPR000387 GO:0016311(InterPro)
Cre04g0825 803 ProSiteProfiles ATP-dependent DNA ligase family profile. 435 580 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cre04g0825 803 PANTHER MRNA-CAPPING ENZYME 78 654 IPR051029 GO:0004484(PANTHER)|GO:0006370(PANTHER)
Cre04g0825 803 SMART dsp_5 120 260 IPR020422 GO:0006470(InterPro)
Cre04g0825 803 MobiDBLite consensus disorder prediction 1 85 - -
Cre04g0825 803 CDD RNA_5'-triphosphatase 89 255 - -
Cre04g0825 803 Pfam mRNA capping enzyme, catalytic domain 353 551 IPR001339 GO:0004484(InterPro)|GO:0005524(InterPro)|GO:0006370(InterPro)
Cre04g0825 803 FunFam mRNA capping enzyme, putative 312 549 - -
Cre04g0825 803 FunFam mRNA capping enzyme family protein 550 658 - -
Cre04g0825 803 ProSitePatterns Tyrosine specific protein phosphatases active site. 205 215 IPR016130 GO:0016311(InterPro)
Cre04g0825 803 Pfam Dual specificity phosphatase, catalytic domain 138 258 IPR000340 GO:0016311(InterPro)
Cre04g0825 803 MobiDBLite consensus disorder prediction 275 309 - -
Cre04g0825 803 FunFam mRNA capping enzyme family protein 82 296 - -
Cre04g0825 803 Gene3D - 550 658 IPR012340 -
Cre04g0825 803 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 313 552 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0825 K13917 - csv:101209960 1312.75