Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0837 ATGGAGGGTGCGGCCGCTGCCGAGATTGGTGCTACCACCGCCGAAGGAGGAGGAGTAGATGCATGTGATGCCGTCGCTTCCGTCGCCGACTGCGGCAGCGGGGACGACGCTGTGCCGATGGTAGGCGAGGGAGAAACAACTGGTGGCCGTGGCGGCAAAGATAGAGTGAAGGGACCTTGGTCTCCTGAAGAGGATGCGATACTCAGCCGCCTTGTGAGTAAGTTCGGTGCGAGGAATTGGAGCTTGATTGCTCGGGGAATCGCTGGGCGATCCGGAAAGTCTTGTCGCCTTAGGTGGTGTAATCAACTCGACCCTTCCGTGAAACGCAAGCCATTTACTGATGAGGAGGACAGGATCATTGTAGCAGCCCATGCTGTACATGGAAATAAATGGGCAGCAATAGCTCGGCTCTTGCCTGGGAGAACGGATAATGCTATAAAGAATCACTGGAATTCCACTTTACGACGTCGATGCACAGAGCTTGAAAGAATCAAGTTAGAATCTGGGAATGCAGTGGATGATGCTAGTTTAGAAAAAACTAAGGGATCATCTGAAGAAACCCTTTCATGTGGAGATGTGAATTCCTTTAAATCCTTGGATGGAAAAGATGCCTGTTCACGGGAGCATTTGGACGATCAATATGAAGACAAGGTCCCTATTGCCATGGAGGGCCAATTTACTCATGAAGTCAAAGAGCAACCAACTCTTTTCAGGCCAGTGGCTCGAGTAAGTGCTTTTAGTGTATATAACCCTTTGGATAGCCAAGAACCTTTGAGGCCATTTTTACGACCTGTTCCAATGCAAGGGCCATTGATTCAAGTGTCAAAACCAGATGTTGAAGCTAGCAAATTTCTTGAAGGGGTTTATGGTGATCGATCAGTGCCTCATCAATGTGGTCATGGTTGTTGTAAGAGTCATAACCAGGGATCTCCTCTAGAATCGTTATTAGGGCCAGAATTTGTGGACTTCTCAGAGCCTCCACCATCCTTCCCCAGTTTTGAACTAGCTGCAATTGCAACTGACATAAGTAACCTTGCTTGGCTGAAAAGTGGGTTGGAGAATGGCAGTGTTAGAGCTATGGGAGATTCAGCTGGAAGATTAAATGGTATGATTCTCTTACCTCAGCTGCATATGCTTGTTCTTAAAGTCACTGGGAACTGGGATTCAGGTGAATTGAAGCTACAGCCTTCATCATGGAGCCTTATTAATTCCCATCTCGAAGTTGGATTCTTGTCCGCGTGGAAAGCTTTAGAGACGGCCGGAGCTGATTTGGAGAAAGAGTGGCAGCGGGCGGCGGCGGCGGCAACGGCGGAGAGGGGAAGTGGAGTTGGTGAAGTGAAGGTGAAGTTGGAGAGAGAATGTAGGATTTGCCATTTGGGTTTAGAGAGCAATAGCAGTGAGTTTGGAGTTGGAATTGAATTGGGTTGTTGTTGTAAGAATGATTTGGGTGCTGCCCACAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGACATGTGAGATATGTCATTCTATTGTAAGAAATGTAATGGTAGCACATGAATTTGAACAAACGGAGCAAGTCCATGGGTCGAACAATGGGACGGTATCAACGGCCACGGTTGCAGCGTCGGTGGCTGCCGCTCCTAGTGGTGGCCGGAGCTTTTGGCATGTTCACCGAGTCCTTAATTTTCTTCTTGCTTGTATGGTATTTGCTTTTGTCATATCTTGGCTCTTTCATTTCAATGTGCCATCATAA 1746 47.77 MEGAAAAEIGATTAEGGGVDACDAVASVADCGSGDDAVPMVGEGETTGGRGGKDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPSVKRKPFTDEEDRIIVAAHAVHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRCTELERIKLESGNAVDDASLEKTKGSSEETLSCGDVNSFKSLDGKDACSREHLDDQYEDKVPIAMEGQFTHEVKEQPTLFRPVARVSAFSVYNPLDSQEPLRPFLRPVPMQGPLIQVSKPDVEASKFLEGVYGDRSVPHQCGHGCCKSHNQGSPLESLLGPEFVDFSEPPPSFPSFELAAIATDISNLAWLKSGLENGSVRAMGDSAGRLNGMILLPQLHMLVLKVTGNWDSGELKLQPSSWSLINSHLEVGFLSAWKALETAGADLEKEWQRAAAAATAERGSGVGEVKVKLERECRICHLGLESNSSEFGVGIELGCCCKNDLGAAHKHCAEAWFKIRGNKTCEICHSIVRNVMVAHEFEQTEQVHGSNNGTVSTATVAASVAAAPSGGRSFWHVHRVLNFLLACMVFAFVISWLFHFNVPS 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27091820 27098658 + CrPI670011_04g008370.1 Cre04g0837 495141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0837 581 SUPERFAMILY RING/U-box 451 509 - -
Cre04g0837 581 MobiDBLite consensus disorder prediction 36 60 - -
Cre04g0837 581 Pfam Myb-like DNA-binding domain 60 117 - -
Cre04g0837 581 FunFam Transcription factor MYB44 111 157 - -
Cre04g0837 581 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 103 IPR017930 -
Cre04g0837 581 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 158 IPR017930 -
Cre04g0837 581 CDD SANT 59 101 IPR001005 -
Cre04g0837 581 SUPERFAMILY Homeodomain-like 54 150 IPR009057 -
Cre04g0837 581 ProSiteProfiles Zinc finger RING-CH-type profile. 446 512 IPR011016 GO:0008270(InterPro)
Cre04g0837 581 Gene3D - 111 157 - -
Cre04g0837 581 Pfam RING-variant domain 454 505 IPR011016 GO:0008270(InterPro)
Cre04g0837 581 PANTHER MYB PROTEIN-RELATED 47 308 IPR050560 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cre04g0837 581 ProSiteProfiles Myb-like domain profile. 104 154 IPR001005 -
Cre04g0837 581 SMART sant 56 105 IPR001005 -
Cre04g0837 581 SMART sant 108 156 IPR001005 -
Cre04g0837 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 440 515 IPR013083 -
Cre04g0837 581 SMART ringv_2 453 506 IPR011016 GO:0008270(InterPro)
Cre04g0837 581 ProSiteProfiles Myb-like domain profile. 52 103 IPR001005 -
Cre04g0837 581 CDD SANT 111 154 IPR001005 -
Cre04g0837 581 Gene3D - 56 108 - -
Cre04g0837 581 FunFam MYB transcription factor 57 108 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0837 Cre-Chr4:27091820 Cre04g1334 Cre-Chr4:32173204 2.10E-44 dispersed
Cre01g1602 Cre-Chr1:29086938 Cre04g0837 Cre-Chr4:27091820 3.90E-34 transposed
Cre02g0390 Cre-Chr2:1055500 Cre04g0837 Cre-Chr4:27091820 1.60E-28 transposed
Cre05g2588 Cre-Chr5:37045399 Cre04g0837 Cre-Chr4:27091820 8.00E-32 transposed
Cre08g0304 Cre-Chr8:9173599 Cre04g0837 Cre-Chr4:27091820 7.50E-36 transposed
Cre08g0592 Cre-Chr8:18836778 Cre04g0837 Cre-Chr4:27091820 1.70E-33 transposed
Cre11g1407 Cre-Chr11:18662579 Cre04g0837 Cre-Chr4:27091820 3.10E-35 transposed
Cre10g2275 Cre-Chr10:37048316 Cre04g0837 Cre-Chr4:27091820 1.30E-39 wgd
Cre11g1124 Cre-Chr11:8838846 Cre04g0837 Cre-Chr4:27091820 3.60E-31 wgd
Cre03g0418 Cre-Chr3:2662191 Cre04g0837 Cre-Chr4:27091820 1.90E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53419 PF13921 Myb_DNA-bind_6 5.00E-16 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0837 K09422 - csv:101212170 677.552