Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g0837 | ATGGAGGGTGCGGCCGCTGCCGAGATTGGTGCTACCACCGCCGAAGGAGGAGGAGTAGATGCATGTGATGCCGTCGCTTCCGTCGCCGACTGCGGCAGCGGGGACGACGCTGTGCCGATGGTAGGCGAGGGAGAAACAACTGGTGGCCGTGGCGGCAAAGATAGAGTGAAGGGACCTTGGTCTCCTGAAGAGGATGCGATACTCAGCCGCCTTGTGAGTAAGTTCGGTGCGAGGAATTGGAGCTTGATTGCTCGGGGAATCGCTGGGCGATCCGGAAAGTCTTGTCGCCTTAGGTGGTGTAATCAACTCGACCCTTCCGTGAAACGCAAGCCATTTACTGATGAGGAGGACAGGATCATTGTAGCAGCCCATGCTGTACATGGAAATAAATGGGCAGCAATAGCTCGGCTCTTGCCTGGGAGAACGGATAATGCTATAAAGAATCACTGGAATTCCACTTTACGACGTCGATGCACAGAGCTTGAAAGAATCAAGTTAGAATCTGGGAATGCAGTGGATGATGCTAGTTTAGAAAAAACTAAGGGATCATCTGAAGAAACCCTTTCATGTGGAGATGTGAATTCCTTTAAATCCTTGGATGGAAAAGATGCCTGTTCACGGGAGCATTTGGACGATCAATATGAAGACAAGGTCCCTATTGCCATGGAGGGCCAATTTACTCATGAAGTCAAAGAGCAACCAACTCTTTTCAGGCCAGTGGCTCGAGTAAGTGCTTTTAGTGTATATAACCCTTTGGATAGCCAAGAACCTTTGAGGCCATTTTTACGACCTGTTCCAATGCAAGGGCCATTGATTCAAGTGTCAAAACCAGATGTTGAAGCTAGCAAATTTCTTGAAGGGGTTTATGGTGATCGATCAGTGCCTCATCAATGTGGTCATGGTTGTTGTAAGAGTCATAACCAGGGATCTCCTCTAGAATCGTTATTAGGGCCAGAATTTGTGGACTTCTCAGAGCCTCCACCATCCTTCCCCAGTTTTGAACTAGCTGCAATTGCAACTGACATAAGTAACCTTGCTTGGCTGAAAAGTGGGTTGGAGAATGGCAGTGTTAGAGCTATGGGAGATTCAGCTGGAAGATTAAATGGTATGATTCTCTTACCTCAGCTGCATATGCTTGTTCTTAAAGTCACTGGGAACTGGGATTCAGGTGAATTGAAGCTACAGCCTTCATCATGGAGCCTTATTAATTCCCATCTCGAAGTTGGATTCTTGTCCGCGTGGAAAGCTTTAGAGACGGCCGGAGCTGATTTGGAGAAAGAGTGGCAGCGGGCGGCGGCGGCGGCAACGGCGGAGAGGGGAAGTGGAGTTGGTGAAGTGAAGGTGAAGTTGGAGAGAGAATGTAGGATTTGCCATTTGGGTTTAGAGAGCAATAGCAGTGAGTTTGGAGTTGGAATTGAATTGGGTTGTTGTTGTAAGAATGATTTGGGTGCTGCCCACAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGACATGTGAGATATGTCATTCTATTGTAAGAAATGTAATGGTAGCACATGAATTTGAACAAACGGAGCAAGTCCATGGGTCGAACAATGGGACGGTATCAACGGCCACGGTTGCAGCGTCGGTGGCTGCCGCTCCTAGTGGTGGCCGGAGCTTTTGGCATGTTCACCGAGTCCTTAATTTTCTTCTTGCTTGTATGGTATTTGCTTTTGTCATATCTTGGCTCTTTCATTTCAATGTGCCATCATAA | 1746 | 47.77 | MEGAAAAEIGATTAEGGGVDACDAVASVADCGSGDDAVPMVGEGETTGGRGGKDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPSVKRKPFTDEEDRIIVAAHAVHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRCTELERIKLESGNAVDDASLEKTKGSSEETLSCGDVNSFKSLDGKDACSREHLDDQYEDKVPIAMEGQFTHEVKEQPTLFRPVARVSAFSVYNPLDSQEPLRPFLRPVPMQGPLIQVSKPDVEASKFLEGVYGDRSVPHQCGHGCCKSHNQGSPLESLLGPEFVDFSEPPPSFPSFELAAIATDISNLAWLKSGLENGSVRAMGDSAGRLNGMILLPQLHMLVLKVTGNWDSGELKLQPSSWSLINSHLEVGFLSAWKALETAGADLEKEWQRAAAAATAERGSGVGEVKVKLERECRICHLGLESNSSEFGVGIELGCCCKNDLGAAHKHCAEAWFKIRGNKTCEICHSIVRNVMVAHEFEQTEQVHGSNNGTVSTATVAASVAAAPSGGRSFWHVHRVLNFLLACMVFAFVISWLFHFNVPS | 581 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 27091820 | 27098658 | + | CrPI670011_04g008370.1 | Cre04g0837 | 495141 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g0837 | 581 | SUPERFAMILY | RING/U-box | 451 | 509 | - | - | |
Cre04g0837 | 581 | MobiDBLite | consensus disorder prediction | 36 | 60 | - | - | |
Cre04g0837 | 581 | Pfam | Myb-like DNA-binding domain | 60 | 117 | - | - | |
Cre04g0837 | 581 | FunFam | Transcription factor MYB44 | 111 | 157 | - | - | |
Cre04g0837 | 581 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 52 | 103 | IPR017930 | - | |
Cre04g0837 | 581 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 104 | 158 | IPR017930 | - | |
Cre04g0837 | 581 | CDD | SANT | 59 | 101 | IPR001005 | - | |
Cre04g0837 | 581 | SUPERFAMILY | Homeodomain-like | 54 | 150 | IPR009057 | - | |
Cre04g0837 | 581 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 446 | 512 | IPR011016 | GO:0008270(InterPro) | |
Cre04g0837 | 581 | Gene3D | - | 111 | 157 | - | - | |
Cre04g0837 | 581 | Pfam | RING-variant domain | 454 | 505 | IPR011016 | GO:0008270(InterPro) | |
Cre04g0837 | 581 | PANTHER | MYB PROTEIN-RELATED | 47 | 308 | IPR050560 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER) | |
Cre04g0837 | 581 | ProSiteProfiles | Myb-like domain profile. | 104 | 154 | IPR001005 | - | |
Cre04g0837 | 581 | SMART | sant | 56 | 105 | IPR001005 | - | |
Cre04g0837 | 581 | SMART | sant | 108 | 156 | IPR001005 | - | |
Cre04g0837 | 581 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 440 | 515 | IPR013083 | - | |
Cre04g0837 | 581 | SMART | ringv_2 | 453 | 506 | IPR011016 | GO:0008270(InterPro) | |
Cre04g0837 | 581 | ProSiteProfiles | Myb-like domain profile. | 52 | 103 | IPR001005 | - | |
Cre04g0837 | 581 | CDD | SANT | 111 | 154 | IPR001005 | - | |
Cre04g0837 | 581 | Gene3D | - | 56 | 108 | - | - | |
Cre04g0837 | 581 | FunFam | MYB transcription factor | 57 | 108 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g0837 | Cre-Chr4:27091820 | Cre04g1334 | Cre-Chr4:32173204 | 2.10E-44 | dispersed | |
Cre01g1602 | Cre-Chr1:29086938 | Cre04g0837 | Cre-Chr4:27091820 | 3.90E-34 | transposed | |
Cre02g0390 | Cre-Chr2:1055500 | Cre04g0837 | Cre-Chr4:27091820 | 1.60E-28 | transposed | |
Cre05g2588 | Cre-Chr5:37045399 | Cre04g0837 | Cre-Chr4:27091820 | 8.00E-32 | transposed | |
Cre08g0304 | Cre-Chr8:9173599 | Cre04g0837 | Cre-Chr4:27091820 | 7.50E-36 | transposed | |
Cre08g0592 | Cre-Chr8:18836778 | Cre04g0837 | Cre-Chr4:27091820 | 1.70E-33 | transposed | |
Cre11g1407 | Cre-Chr11:18662579 | Cre04g0837 | Cre-Chr4:27091820 | 3.10E-35 | transposed | |
Cre10g2275 | Cre-Chr10:37048316 | Cre04g0837 | Cre-Chr4:27091820 | 1.30E-39 | wgd | |
Cre11g1124 | Cre-Chr11:8838846 | Cre04g0837 | Cre-Chr4:27091820 | 3.60E-31 | wgd | |
Cre03g0418 | Cre-Chr3:2662191 | Cre04g0837 | Cre-Chr4:27091820 | 1.90E-28 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53419 | PF13921 | Myb_DNA-bind_6 | 5.00E-16 | CL0123 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g0837 | K09422 | - | csv:101212170 | 677.552 |