Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0857 ATGGGAGAAGAAGAAGTGCAGGTGTTTGGTTTCCGGTCAGGTCCGTATAGTCTGAGAGTGGAATTGGCTCTTAAACTCAAAGGAGTTGATTATCAACACATTGACGAGGATTTGATGAACAAAAAGAGCGATTTGCTGTTGAAATACAACCCAATTTACAAGAAAGTGCCGGTTCTTGTTCACCATGGGAAGCCCATTTCAGAGTCTCTTGTAATCCTTGAATACATCGAAGAAAAATGGAGAGAAAATTATCTAATCTTGCCCCAAGATCCCCATCAAAGAGCTCTTGCCAGATTTTGGGCCAAGTACATTGATGACAAGGTAGTGCCTGCAGTGCAGAAAGCTGCAAGAAGCAAAGAAGAAGAGAGAGAGAAGAGCATAGAAGAAGCTCAGGAGACATTGGAACCACTTGAGAAAGAGCTTAAAAACAAGTTGTTCTTTGGAGGAGACAAAATTGGATTTGTGGACATTGTAGGCCTGGTTTTAGCTTGCTGGATTCCTGCCACTGAAGAAGCTGTAGGCTTTGAGCTGCTATCAACCCACAAATTTCCAAATCTAACCAAATGGGCTCAACATTTTGTGAACCACAGCGTTGCAAAGGAAGTTTTGCCTCAAAAAGATGTTCTTGTTGCCTTCTTGAAGAATGTTGTGTTTGTTCCAAAAAACTAG 669 41.7 MGEEEVQVFGFRSGPYSLRVELALKLKGVDYQHIDEDLMNKKSDLLLKYNPIYKKVPVLVHHGKPISESLVILEYIEEKWRENYLILPQDPHQRALARFWAKYIDDKVVPAVQKAARSKEEEREKSIEEAQETLEPLEKELKNKLFFGGDKIGFVDIVGLVLACWIPATEEAVGFELLSTHKFPNLTKWAQHFVNHSVAKEVLPQKDVLVAFLKNVVFVPKN 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27251497 27252516 - CrPI670011_04g008570.1 Cre04g0857 495161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0857 222 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 5 214 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Cre04g0857 222 Pfam Glutathione S-transferase, N-terminal domain 5 78 IPR004045 -
Cre04g0857 222 SUPERFAMILY Thioredoxin-like 6 109 IPR036249 -
Cre04g0857 222 Gene3D - 90 218 - -
Cre04g0857 222 SFLD Main (cytGST) 2 215 - -
Cre04g0857 222 Gene3D Glutaredoxin 1 89 - -
Cre04g0857 222 SFLD Main.3: Omega- and Tau-like 2 215 IPR045073 -
Cre04g0857 222 Pfam Glutathione S-transferase, C-terminal domain 99 195 IPR004046 -
Cre04g0857 222 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 84 IPR004045 -
Cre04g0857 222 CDD GST_C_Tau 91 214 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Cre04g0857 222 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 210 IPR010987 -
Cre04g0857 222 FunFam Tau class glutathione S-transferase 87 218 - -
Cre04g0857 222 CDD GST_N_Tau 6 80 - -
Cre04g0857 222 SUPERFAMILY GST C-terminal domain-like 80 215 IPR036282 -
Cre04g0857 222 FunFam Glutathione S-transferase GSTU6 1 87 - -
Cre04g0857 222 Coils Coil 120 140 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0847 Cre-Chr4:27177777 Cre04g0857 Cre-Chr4:27251497 4.20E-74 dispersed
Cre04g0857 Cre-Chr4:27251497 Cre04g0861 Cre-Chr4:27270641 6.70E-71 dispersed
Cre04g0857 Cre-Chr4:27251497 Cre04g0858 Cre-Chr4:27255540 3.00E-15 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0857 K00799 - csv:101215228 370.548