Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0862 ATGACGGAACAACTGCAGGTGCAGGTGTTTGGTTCTAGGTTTAGTCCCTTCAGTCGGCGAGTGGAGTTGGCTCTCAAACTCAAAGGCATAAAATACCAATATGTGGAGGAAGACATACCCAACAAAAGCCATTTGCTTCGGAAATACAATCCACTTTACAAGAAGGTCCCTGTGCTCGTCCATAATGGAAACCCCATTGCTGAGTCTCTTGTCATCCTTGAATACATTGATGAGCATTGGAAAACCAACCCCATCTTGCCCCAGCATCCTCGGGAAAGAGCTCAAGCAAGATTTTTGGCCAAGTATATTGATGACAAGTTTTTTGGTGCGTGGAGGAAAGCTGTTAGAAGTCAAAGAGAAGGGAGAGAGAAGGTTGTGAAGGCTGTGGAGGAAGCATGCAAGGCGTTGGAAGCAGTTGAGAATGAGCTTAAAAGCAACAATAAGTTCTTTGGAGGAGACAACATTGGGTTAGTGGACATTGTAGGCATCTTCATAGGCTATTGGGTTCCTATCATGCAAACAGCTCTTGGGTTTGAGATTCTGAGCAGCCACAGGTTCCCAAAACTAAGTAAATGGAGTGAAGATCTTATGAGCCATAGCGTTGTGAAGGAGATTCTCCCTCCAAAACCTGACCTTTTTGCTTATACTCAAACTCGTTTTCTATCCAAAAATCTGGGTTCTAAGCTGTGA 690 44.2 MTEQLQVQVFGSRFSPFSRRVELALKLKGIKYQYVEEDIPNKSHLLRKYNPLYKKVPVLVHNGNPIAESLVILEYIDEHWKTNPILPQHPRERAQARFLAKYIDDKFFGAWRKAVRSQREGREKVVKAVEEACKALEAVENELKSNNKFFGGDNIGLVDIVGIFIGYWVPIMQTALGFEILSSHRFPKLSKWSEDLMSHSVVKEILPPKPDLFAYTQTRFLSKNLGSKL 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27277182 27279133 - CrPI670011_04g008620.1 Cre04g0862 495166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0862 229 FunFam Tau class glutathione S-transferase 1 89 - -
Cre04g0862 229 Pfam Glutathione S-transferase, N-terminal domain 6 78 IPR004045 -
Cre04g0862 229 Gene3D - 86 224 - -
Cre04g0862 229 CDD GST_N_Tau 7 80 - -
Cre04g0862 229 SFLD Main (cytGST) 5 220 - -
Cre04g0862 229 CDD GST_C_Tau 90 219 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Cre04g0862 229 SUPERFAMILY Thioredoxin-like 7 108 IPR036249 -
Cre04g0862 229 ProSiteProfiles Glutaredoxin domain profile. 1 93 - -
Cre04g0862 229 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 217 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Cre04g0862 229 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 220 IPR010987 -
Cre04g0862 229 SUPERFAMILY GST C-terminal domain-like 78 219 IPR036282 -
Cre04g0862 229 SFLD Main.3: Omega- and Tau-like 5 220 IPR045073 -
Cre04g0862 229 Coils Coil 122 146 - -
Cre04g0862 229 Gene3D Glutaredoxin 1 85 - -
Cre04g0862 229 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
Cre04g0862 229 Pfam Glutathione S-transferase, C-terminal domain 116 198 IPR004046 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0858 Cre-Chr4:27255540 Cre04g0862 Cre-Chr4:27277182 9.40E-20 dispersed
Cre04g0860 Cre-Chr4:27261224 Cre04g0862 Cre-Chr4:27277182 1.50E-30 dispersed
Cre04g0862 Cre-Chr4:27277182 Cre05g0336 Cre-Chr5:3082789 9.60E-49 dispersed
Cre04g0861 Cre-Chr4:27270641 Cre04g0862 Cre-Chr4:27277182 7.60E-58 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0862 K00799 - csv:105435246 256.144