Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0872 ATGGCGGAGGGTTTTGAAGTTTACCATGTCCCACAACAAAGCAGGAGAGACAAGCTTAGAGTTGGAATTGGAATTGGTACTACTAATTCTACTAATTCTATTAATCATCATAATAATTTCTTCCCTTTATATGATGATCCTTCTTCTTTTATTTCTTCCGATTTTGATTTTCATCAAAATCCCTCTTTTCAACTTTATCATCATAATTACCCTCCTACCTCTGCCGTCACCGCCGCCGCCCTCCACCACCACCTCCCTCCACTCCTCTCCGACCAACAACCACCCTTGTCCCTTGACCTCAACCTCCAACACCGCTACGCCTATCATTCTACTTTACCACTTCAAGCCTCAAAATTCTTCAAGCCAGCTCAGCAGCTCCTCCATGACCTATTTGATTACGCCCCCCCTAACTCCTCCGACAAGTTGCTGCCGGATTCCTCCCTTCTTGACACCTTGGAAGGTGATATTCCCGCCGCCGCCGATGATGGACTTGAAACCCACACGACAAAATCTAGGCTTATTACCATGCTTCACGAGGTTTATAGAAGATATAAACTATACTATCAGCAAATGCAAGCAGTGGTTACAACATTTGAGTACGCTGCAGGGCTTGGCAATGCAGCTCCCTATGCAAACTTAGCCGTAAAAGCCATGTTTAAGCACTTCAAATTCTTAAAGAACGCCATAGCCGACCAGCTCCAAATCAACAAGCAGCACCAACCGCCGTCTTACAATCCATATTCTCAAAGATCCATTAACAACCACGGTGCCGGATTCGTCGACCACCAACCTGTTTGGCGCCCGCAGCGAGGCCTCCCTGAGAGTGCTGTCACCGTCCTCCGAGCTTGGCTCTTTGAGCACTTCCTCCATCCTTATCCTACGGATACAGATAAGCTCATGTTGGCCAACCAGACGGGACTCTCGAGAAGTCAGGTATCAAACTGGTTCATCAATGCAAGAGTGAGACTATGGAAACCGATGGTTGAAGAAATCCACATGTTAGAAACAAGGCAAGCTCAAAAATCTCAGCAAAAGGAAGCCAACAATAATAATGCCTTAAACAACAACAACAACGACCATCTTTCATCCACAAACGAATCCTTATTGAAACCCGACGGCCACAACAACAACAATGCATCTTCTTCAAACCACGACCACCACCCTCTAGATTTGTCCAACACCCATTTCTTTCCAACCCACCACCCTCACGCCGCTGCCGGAGCCACCGCTATTGGCGGCAGTGGCAACATTTCCTTGACGCTCGGCCTCCACCAAAACCATGCTGGGATCACTCTCACGGAGCCATTTCCCATCAATGCTGCTCAGCATTTTAACCTTGGGTTAGAAGCCAACGGTGAAGGATTTGTAAATGAGTGGTTTTGA 1383 47.07 MAEGFEVYHVPQQSRRDKLRVGIGIGTTNSTNSINHHNNFFPLYDDPSSFISSDFDFHQNPSFQLYHHNYPPTSAVTAAALHHHLPPLLSDQQPPLSLDLNLQHRYAYHSTLPLQASKFFKPAQQLLHDLFDYAPPNSSDKLLPDSSLLDTLEGDIPAAADDGLETHTTKSRLITMLHEVYRRYKLYYQQMQAVVTTFEYAAGLGNAAPYANLAVKAMFKHFKFLKNAIADQLQINKQHQPPSYNPYSQRSINNHGAGFVDHQPVWRPQRGLPESAVTVLRAWLFEHFLHPYPTDTDKLMLANQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQKSQQKEANNNNALNNNNNDHLSSTNESLLKPDGHNNNNASSSNHDHHPLDLSNTHFFPTHHPHAAAGATAIGGSGNISLTLGLHQNHAGITLTEPFPINAAQHFNLGLEANGEGFVNEWF 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27410263 27414667 + CrPI670011_04g008720.1 Cre04g0872 495176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0872 460 SMART HOX_1 266 330 IPR001356 GO:0003677(InterPro)
Cre04g0872 460 SUPERFAMILY Homeodomain-like 268 333 IPR009057 -
Cre04g0872 460 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 82 360 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre04g0872 460 Pfam Homeobox KN domain 283 322 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre04g0872 460 ProSiteProfiles 'Homeobox' domain profile. 263 326 IPR001356 GO:0003677(InterPro)
Cre04g0872 460 MobiDBLite consensus disorder prediction 337 401 - -
Cre04g0872 460 FunFam BEL1-like homeodomain protein 9 269 331 - -
Cre04g0872 460 SMART prehox3 106 231 IPR006563 -
Cre04g0872 460 Pfam Associated with HOX 114 230 IPR006563 -
Cre04g0872 460 CDD homeodomain 266 327 IPR001356 GO:0003677(InterPro)
Cre04g0872 460 Gene3D - 269 331 - -
Cre04g0872 460 MobiDBLite consensus disorder prediction 337 387 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0872 Cre-Chr4:27410263 Cre04g1254 Cre-Chr4:31285032 4.90E-52 dispersed
Cre10g2260 Cre-Chr10:36943790 Cre04g0872 Cre-Chr4:27410263 2.20E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53421 PF07526 POX 1.10E-28 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0872 - - - 0.0