Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0882 ATGGCTTCTTGCCGCATAAATCTTCCTCACCGGTGTTCTCCCGGAGCGCCGCGCCTTGGCCCCACTTCTTCCCTCCTGAACCCTAATCCTCTTCCTCAATTACTTCATCCTTTTCCATCTTCTCTTCTCAATTCCAATAAGTTATCCTCTTCCAGAATCCGCCACCGCAGCGTTATTGCCATGAACGCTCACATGGCTACGGAGGCGAAACCTGTTTCAGAGGATAGAATGCTCGTGTATGTTCCGCCTCATCCGTTGATCAAGCACTGGGTTTCAGTTTTGAGGAATGAACAAACTCCTTGCCCCATTTTTAAAAATGCAATGGCTGAGCTAGGGAGGCTACTTATTTATGAAGCTTCGAGGGATTGGTTGCCTACTGTAACGGGGGAGATACAGTCACCCATGGGTGTAGCTTCTGTTGAGTTTGTCGATCCAAGAGAGCCTGTGGCAATAATTCCCATCCTTAGAGCTGGTCTAGCTCTTGCAGAATCTGCATCAGCTGTATTGCCTGCAACAAAATTTTACCATCTTGGGATAAGCAGGGACGAGGAGACTCTTCAACCAACTATATATCTTAACAAGTTACCAGAAAATTTTCCTGAAGGTTGTAGAATTTTTGTGGTCGATCCCATGCTTGCAACTGGTGGCACAATAGTGGCAGCTCTTGATCTCCTAAAGGATCGTGGAATTAGCAACAAGCAAATAAAAGTGATATCAGCTGTTGCTGCCCCTCCCGCCCTTCAAAAGCTCAGCGAGAAGTTTCCAGGGCTACATATATACACTGGAATTATTGACCCGACAGTTAATGACAAAGGGTTTATAATTCCCGGACTTGGAGATGCTGGCGATCGCAGCTTCGGCACATGA 867 46.71 MASCRINLPHRCSPGAPRLGPTSSLLNPNPLPQLLHPFPSSLLNSNKLSSSRIRHRSVIAMNAHMATEAKPVSEDRMLVYVPPHPLIKHWVSVLRNEQTPCPIFKNAMAELGRLLIYEASRDWLPTVTGEIQSPMGVASVEFVDPREPVAIIPILRAGLALAESASAVLPATKFYHLGISRDEETLQPTIYLNKLPENFPEGCRIFVVDPMLATGGTIVAALDLLKDRGISNKQIKVISAVAAPPALQKLSEKFPGLHIYTGIIDPTVNDKGFIIPGLGDAGDRSFGT 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27489277 27493929 - CrPI670011_04g008820.1 Cre04g0882 495186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0882 288 Pfam Uracil phosphoribosyltransferase 81 288 - -
Cre04g0882 288 FunFam Uracil phosphoribosyltransferase 77 288 - -
Cre04g0882 288 SUPERFAMILY PRTase-like 79 287 IPR029057 -
Cre04g0882 288 CDD PRTases_typeI 144 264 IPR000836 -
Cre04g0882 288 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 80 265 IPR050054 -
Cre04g0882 288 Gene3D - 63 288 IPR029057 -
Cre04g0882 288 NCBIfam uracil phosphoribosyltransferase 79 288 IPR005765 GO:0004845(InterPro)|GO:0006223(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0882 K00761 - - csv:101209447 517.694
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0882 Cre-Chr4:27489277 Cre05g1354 Cre-Chr5:15353197 5.10E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g796 . . . . . Bpe03g01028 . . . . Cma03g00404 . Car03g00353 . Sed14g0515 Cpe10g00910 . Bhi03g02043 Tan03g0913 Cmetu08g1944 . . . . Cla04g00768 Cam04g0797 Cec04g0921 Cco04g0972 Clacu04g0832 Cmu04g0825 Cre04g0882 . . Cone13ag1356 Cone19ag1352 Lsi01g01465 Csa04g01535 Chy08g00711 . Blo07g01168 . . Bda05g00954 . . . . . Cmo03g00417 . . . . . . . . . . . . . . . . . . . . . . . . Cme08g02442
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre09g2136 . 30 180 PRT Gene Family AT1G80050 75.5 7.0e-62 233.8
Cre10g0535 . 30 180 PRT Gene Family AT1G80050 75.5 7.0e-62 233.8
Cre08g1285 . 33 168 PRT Gene Family AT1G80050 80.9 8.8e-57 216.9
Cre08g1585 . 112 261 PRT Gene Family AT1G80050 70.0 7.5e-56 213.8
Cre08g1285 . 1 148 PRT Gene Family AT5G11160 81.1 4.6e-64 241.1
Cre09g2136 . 8 145 PRT Gene Family AT5G11160 75.4 2.3e-55 212.2
Cre08g1585 . 90 227 PRT Gene Family AT5G11160 73.2 2.5e-54 208.8
Cre10g0535 . 8 145 PRT Gene Family AT5G11160 71.0 8.9e-52 200.3
Cre08g1585 . 83 264 PRT Gene Family AT1G27450 82.4 1.3e-80 296.2
Cre09g2136 . 7 180 PRT Gene Family AT1G27450 74.7 1.0e-72 270.0
Cre10g0535 . 1 180 PRT Gene Family AT1G27450 71.1 1.2e-70 263.1
Cre08g1285 . 11 168 PRT Gene Family AT1G27450 73.4 3.8e-64 241.5
Cre11g0875 . 73 557 PRT Gene Family AT2G16570 85.2 6.3e-243 837.0
Cre11g0875 . 73 557 PRT Gene Family AT4G34740 86.0 1.7e-243 839.0
Cre11g0875 . 28 530 PRT Gene Family AT4G38880 70.4 1.8e-199 692.6
Cre08g1585 . 83 264 PRT Gene Family AT1G27450 82.4 1.3e-80 296.2
Cre09g2136 . 7 180 PRT Gene Family AT1G27450 74.7 1.0e-72 270.0
Cre10g0535 . 1 180 PRT Gene Family AT1G27450 71.1 1.2e-70 263.1
Cre08g1285 . 11 168 PRT Gene Family AT1G27450 73.4 3.8e-64 241.5
Cre09g2136 . 30 180 PRT Gene Family AT1G80050 75.5 7.0e-62 233.8
Cre10g0535 . 30 180 PRT Gene Family AT1G80050 75.5 7.0e-62 233.8
Cre08g1285 . 33 168 PRT Gene Family AT1G80050 80.9 8.8e-57 216.9
Cre08g1585 . 112 261 PRT Gene Family AT1G80050 70.0 7.5e-56 213.8
Cre10g0535 . 5 97 PRT Gene Family AT4G22570 87.1 3.3e-44 174.5
Cre09g2136 . 6 104 PRT Gene Family AT4G22570 82.8 5.6e-44 173.7
Cre08g1585 . 88 179 PRT Gene Family AT4G22570 82.6 1.1e-39 159.5
Cre08g1285 . 11 100 PRT Gene Family AT4G22570 78.9 2.3e-37 151.8
Cre10g0535 . 1 96 PRT Gene Family AT4G12440 84.4 5.3e-41 163.7
Cre09g2136 . 1 96 PRT Gene Family AT4G12440 84.4 9.1e-41 162.9
Cre08g1585 . 83 178 PRT Gene Family AT4G12440 79.2 9.4e-38 152.9
Cre08g1285 . 4 99 PRT Gene Family AT4G12440 78.1 3.6e-37 151.0
Cre08g1285 . 1 148 PRT Gene Family AT5G11160 81.1 4.6e-64 241.1
Cre09g2136 . 8 145 PRT Gene Family AT5G11160 75.4 2.3e-55 212.2
Cre08g1585 . 90 227 PRT Gene Family AT5G11160 73.2 2.5e-54 208.8
Cre10g0535 . 8 145 PRT Gene Family AT5G11160 71.0 8.9e-52 200.3
Cre08g0668 . 1 186 PRT Gene Family AT1G71750 65.0 1.9e-69 259.2
Cre01g0318 . 46 498 PRT Gene Family AT1G55810 85.5 2.5e-226 781.6
Cre05g1354 . 19 482 PRT Gene Family AT1G55810 73.5 1.5e-199 692.6
Cre01g0318 . 95 503 PRT Gene Family AT3G27440 76.5 1.7e-184 642.5
Cre05g1354 . 80 482 PRT Gene Family AT3G27440 75.4 9.6e-180 626.7
Cre05g1354 . 1 482 PRT Gene Family AT3G27190 85.7 2.4e-246 848.2
Cre01g0318 . 42 497 PRT Gene Family AT3G27190 75.5 7.4e-208 720.3
Cre04g0882 . 3 288 PRT Gene Family AT3G53900 66.1 2.0e-107 386.0
Cre01g0318 . 32 498 PRT Gene Family AT4G26510 84.7 7.1e-232 800.0
Cre05g1354 . 11 482 PRT Gene Family AT4G26510 75.8 7.7e-210 726.9
Cre05g1354 . 1 482 PRT Gene Family AT5G40870 86.3 1.4e-246 849.0
Cre01g0318 . 42 500 PRT Gene Family AT5G40870 74.2 1.4e-206 716.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005664 1 4 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 39