Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0891 ATGGAAACCCATCTTCCGCCCCTGTTCTTTCTTCTCATTTTCCTCTCATTCTTCCTCTGCTGCCCTGCCAAGCGCTGCCCAGACTGCGGCCACACGCCGGTGCCGTACCCACTCAGCACAAGCCCAGATTGCGGCGACCCTCTTTACAGAGTCCGGTGCGCCGCCCCCGAACTCTGGTTCGAGTCCGTCAATGGGTCTTTCTATTTGATCACTTCCGTTAATCCGGTGGCACAGAGGCTGATCGTCCGGCCGCCAGGGTTGGCCAAAAACACCTGCGTTTCGTCGGATTTTGGTACCAGTGGTTTTTGGCTCGACACGCGCCTTCCTTTCACCATTTCCGATAGAAACACGGTTTTGCTCTACAACTGTTCGGTGGAAGTCCTCGAAAATAGTTGGAATTGTGCACCTAATAGCATCTGTCATGACTTTATCAGACAGAATCCGGTGGCAATGGCAGCGTGTAAGGTGGCGCCGACGTGCTGTTGGTACACGAGTGGCGGTTCCATGACTGCGTCTAGAATCAGGGTGCGAAAGGAGCGGTGTTCGGCTTATGAATGTTTTGTGAATTTGGGTAGTTCTGTTCCGCCGAAGAAGTGGCCGGAACCTGGGGTCGAGATTCAATGGACACCACCCCGAGAGCCGGCATGTCGTGTGGCTACGGACTGCCGGAATTGGGTGAATTCTGCTTGTTCGCCGGACCCTGCAAACGCCGGGCAGAGGAGGTGCTTATGCAAGGTTCCTTTCAAGTGGGATCCTATAAATGGCTTGTGTAGTGGCAACAATTTGAAAATACAGAACAAGATAACTCACAAGAAGCACAAGAAGATGCCTGTTATTCTAGGAGCAATGGCGGGAGTATTTGTAATGGTGATTGGAGGTTCAATCATGTTTATAATTTCCAAAAGACGTCGACAGATTCCGAAGGGGAACGAGCTGAGTTCGAAACAAGTTCGTGAAGTGATTCTAACCGCCAACAGCAGTGGAAAATCGGCGAGGATGTTCACAACCAAAGAGATAGCAAAGGCTACAAACAACTTCTCCAAGGAGAATTTGCTTGGCTCTGGTGGCTATGGAGAGGTCTTCAAAGGCAACTTAGAAGATGGAACCTCAATAGCAGTTAAACGTGCAAAGTTGGGTAGCATGAAGGGTATTGATCAAATCCTGAACGAGGTTCGGATTCTTTGTCAGGTGAACCATCGATACCTCGTTCGTCTACTTGGATGTTGTCTCGAACTTGAGCAACCCCTCTTAATATATGAGTACATCTCGAATGGGAACCTGTTTGATCACCTTCATGGGAATACAAGTTCAAGCAAATGGCCACCGTTGACATTGAGTCGTCGACTCTGCATAGCTTGGCAAACAGCCGAGGGCCTTGCTTATCTCCACACTTCAGCCACACCGAGAATCTATCACCGAGACATAAAGTCGAGCAATATTCTACTAGACGAGAAGTTAAATGCCAAAGTAGCTGATTTTGGGCTGTCTAGATTGGCTATAACTGAATCAAGCCATATTACAACTGGGGCTCAGGGAACATTAGGTTATCTTGACCCAGAATATTACCTTAATTTCCAATTGACAGACAAGAGTGATGTTTATAGTTTTGGAGTTGTCATGTTGGAGCTATTGACTTCGGAGAAAGCCATTGATTTTAATAGGGAAGAGGAAGATGTAAATTTAGTAGTTTATATCAAGAAGATAATCCAAGAAGACAGATTGATGGAGGTTGTTGATCCTGTGATAAAACAGAGAGCAAGCAGAGTTGAAATGGAGATAATCAAGGCATTAGGGTCTTTAGCAGCAGCTTGCTTGGATGAAAAGAGGCAGAATAGACCTGCCATGAAAGAAGTTGCTGATGAGCTAGCCAATATTATTTCCATTCTTAATAATGAGGTTAGAAATATTGACTAA 1914 46.66 METHLPPLFFLLIFLSFFLCCPAKRCPDCGHTPVPYPLSTSPDCGDPLYRVRCAAPELWFESVNGSFYLITSVNPVAQRLIVRPPGLAKNTCVSSDFGTSGFWLDTRLPFTISDRNTVLLYNCSVEVLENSWNCAPNSICHDFIRQNPVAMAACKVAPTCCWYTSGGSMTASRIRVRKERCSAYECFVNLGSSVPPKKWPEPGVEIQWTPPREPACRVATDCRNWVNSACSPDPANAGQRRCLCKVPFKWDPINGLCSGNNLKIQNKITHKKHKKMPVILGAMAGVFVMVIGGSIMFIISKRRRQIPKGNELSSKQVREVILTANSSGKSARMFTTKEIAKATNNFSKENLLGSGGYGEVFKGNLEDGTSIAVKRAKLGSMKGIDQILNEVRILCQVNHRYLVRLLGCCLELEQPLLIYEYISNGNLFDHLHGNTSSSKWPPLTLSRRLCIAWQTAEGLAYLHTSATPRIYHRDIKSSNILLDEKLNAKVADFGLSRLAITESSHITTGAQGTLGYLDPEYYLNFQLTDKSDVYSFGVVMLELLTSEKAIDFNREEEDVNLVVYIKKIIQEDRLMEVVDPVIKQRASRVEMEIIKALGSLAAACLDEKRQNRPAMKEVADELANIISILNNEVRNID 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27558924 27561025 - CrPI670011_04g008910.1 Cre04g0891 495195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0891 637 CDD STKc_IRAK 352 625 - -
Cre04g0891 637 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 17 625 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Cre04g0891 637 Gene3D Transferase(Phosphotransferase) domain 1 422 635 - -
Cre04g0891 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g0891 637 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 318 421 - -
Cre04g0891 637 SMART serkin_6 346 629 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g0891 637 Gene3D Phosphorylase Kinase; domain 1 308 421 - -
Cre04g0891 637 SUPERFAMILY Protein kinase-like (PK-like) 329 622 IPR011009 -
Cre04g0891 637 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524(InterPro)
Cre04g0891 637 Pfam Protein tyrosine and serine/threonine kinase 349 622 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g0891 637 ProSiteProfiles Protein kinase domain profile. 346 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g0891 637 FunFam Wall-associated receptor kinase-like 20 422 635 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0891 Cre-Chr4:27558924 Cre08g0571 Cre-Chr8:18558434 8.50E-79 dispersed
Cre02g1839 Cre-Chr2:31654411 Cre04g0891 Cre-Chr4:27558924 1.10E-35 transposed
Cre10g2067 Cre-Chr10:35359230 Cre04g0891 Cre-Chr4:27558924 3.40E-152 transposed
Cre11g1145 Cre-Chr11:9056123 Cre04g0891 Cre-Chr4:27558924 4.60E-186 transposed
Cre02g2283 Cre-Chr2:36399238 Cre04g0891 Cre-Chr4:27558924 1.60E-55 wgd
Cre04g0891 Cre-Chr4:27558924 Cre05g1020 Cre-Chr5:9444785 8.30E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64038 PF07714 PK_Tyr_Ser-Thr 1.80E-46 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0891 - - - 0.0