Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0897 ATGGCGGCGATCTTCTTCCTCATCTTAATTCTTTTGATTTTCATTTCTCTAGCTTCTGGAGATCAAAGCTTCATCTTCAATGGCTTCAGCTCCGGCGATCTCATCCTCGACGGCGTCGCCGAAGTAACCTCCAATGGCCTTTTGAAGCTCACCAACACGTACGACCAACAAATTGGCCACGCCTTTTACCCCAATTCCATTTCCTTCAAATCCCCATCAAACAATTCCTCAATTTCCTCCTTCTCTGCAACGTTCGTCTTCGCCATAATCTCAGAGTACGACGATCTTGGCGGCCATGGAATCGCCTTCGTCGTTTCTCCAACGAGGGGTCTCCCCGGAGCTCGGCCGAGCGAAAACCTCGGTCTATTCAACGAATCCAACAACGGGAACGAAGCGAATCACATCTTCGCCGTTGAAATCGACACGATTCAGAATCTTGATCTTAAAGACATCAACAAGAATCATGTCGGAATCAACATTAACGGACTGGTATCGGAGCGGGCGGAGCGAGCAGGGTATTGGGTCGACGGAAAATTCAGGAATTTGACGTTAATCAGTGGTGAACCGATGCAACTTTGGGTTGAATACGACGGTTTTGAAAAGCAAATCAACGTTACTCTGTCTCCAATTGAAATCAGAGATAAACCCAAAATCCCCCTTTTATCTTACCGGCGAGACTTATCGTCGGTCATCAACGACATCATGTACATCGGATTCTCTTCATCGACAGGCTCCATTACGACGTTGCATTACATTTTAGGTTGGAGCTTCAGCGTCAATGGCGAAGCGCAGAGGCTTAATCTGTCTCAACTCCCCAAGCTTCCATCTCGGCCGGGAAAAAAACAGAGACGATCTAAATTCTTGACAGTGGGTTTACCGTTGATTTCTGTTTCATTAGCTTCAATGACAGTTCTGGGGGTAATTTATTTCATTCACCGGAGACGGAAATTCGCAGAGATTTTAGAGGATTGGGAGCTGGAATACGGACCCCAGAGATTCAAATACAAGGATTTATACAGAGCAACAAAGGGATTCAGAGAAAAGGAATTTCTGGGATTTGGTGGATTCGGAAGAGTTTACAAAGGGGTTTTACCAAATTCAAAAATCGAAGTAGCAGTGAAGAAAATCTCTCACGAATCGAGACAGGGGATGAAGGAATTCGTGGCGGAGATAGTGAGTGTAGGGCGGCTCCGGCACCGGAACTTGGTGACGCTGTTGGGGTATTGTCGGCGGAAAGGGGAGCTGTTTTTGGTGTACGATTACATGAGGAATGGAAGCTTGGATACGTATTTACATGAGTTGCCGGAAATTACGATAAATTGGGAACAGAGATTTGAGATAATAAAAGGAGTGGCGTCGGGGCTGTTTTATCTTCATGAACAGTGCGAGAAAGTGGTGATTCATAGAGATGTGAAGGCGAGTAATGTGTTGCTTGATGATGAATTCAATGGCCGATTGGGGGATTTCGGTTTGGCAAAAATGTATGAGCGTGGCGCCGATCCTCGAACCACTCACGTCGTCGGAACTCTTGGGTATTTAGCGCCAGAGCACATAAGAACAGGGAGAGCCACAACAAGAACAGACGTATACGCATTTGGGGCATTTCTTCTAGAAGTGTCCTGTGGAAGAAGGCCAATTCATCCTCAAGAAGACGCCGACGATTTCATTTTAATGGATTGGGTTTTCTCTTGTTGGACAAACGGCCAAATTCTCCGAACCGCCGATCCCAAATTGGGAGGTAATTTCGAACCTTCTCAGCTCGAATTGGTTCTCAAACTTGGCTTGCTCTGCTCTCACTACTCCCCCGCCGTTCGCCCCACCATGCACCAGGTTCTGCAGTATTTGCAGGCCGATGCGCCGCTGCCGGACCTCGCCTCGCTCCGGTGGCGCCTCTCAGGAAGTGGGTTTTTCAACTTCAGACCTCGCGACGGCGATGGCGATAGTGATGGGTTGGATGATTTTACGATGTCTTATCCGTTATCGACGGGAAGGAATGTGACGAGTTCGTCGTCGGTTGCGGAGTCTATTCTGTCGGAAGGCCGCTGA 2046 47.8 MAAIFFLILILLIFISLASGDQSFIFNGFSSGDLILDGVAEVTSNGLLKLTNTYDQQIGHAFYPNSISFKSPSNNSSISSFSATFVFAIISEYDDLGGHGIAFVVSPTRGLPGARPSENLGLFNESNNGNEANHIFAVEIDTIQNLDLKDINKNHVGININGLVSERAERAGYWVDGKFRNLTLISGEPMQLWVEYDGFEKQINVTLSPIEIRDKPKIPLLSYRRDLSSVINDIMYIGFSSSTGSITTLHYILGWSFSVNGEAQRLNLSQLPKLPSRPGKKQRRSKFLTVGLPLISVSLASMTVLGVIYFIHRRRKFAEILEDWELEYGPQRFKYKDLYRATKGFREKEFLGFGGFGRVYKGVLPNSKIEVAVKKISHESRQGMKEFVAEIVSVGRLRHRNLVTLLGYCRRKGELFLVYDYMRNGSLDTYLHELPEITINWEQRFEIIKGVASGLFYLHEQCEKVVIHRDVKASNVLLDDEFNGRLGDFGLAKMYERGADPRTTHVVGTLGYLAPEHIRTGRATTRTDVYAFGAFLLEVSCGRRPIHPQEDADDFILMDWVFSCWTNGQILRTADPKLGGNFEPSQLELVLKLGLLCSHYSPAVRPTMHQVLQYLQADAPLPDLASLRWRLSGSGFFNFRPRDGDGDSDGLDDFTMSYPLSTGRNVTSSSSVAESILSEGR 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27646271 27651637 + CrPI670011_04g008970.1 Cre04g0897 495201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0897 681 Gene3D - 21 272 - -
Cre04g0897 681 MobiDBLite consensus disorder prediction 658 681 - -
Cre04g0897 681 ProSiteProfiles Protein kinase domain profile. 345 621 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g0897 681 Gene3D Transferase(Phosphotransferase) domain 1 422 627 - -
Cre04g0897 681 SUPERFAMILY Protein kinase-like (PK-like) 326 621 IPR011009 -
Cre04g0897 681 FunFam L-type lectin-domain containing receptor kinase V.9 21 264 - -
Cre04g0897 681 FunFam L-type lectin-domain containing receptor kinase S.4 422 628 - -
Cre04g0897 681 CDD lectin_legume_LecRK_Arcelin_ConA 23 261 IPR001220 GO:0030246(InterPro)
Cre04g0897 681 Pfam Legume lectin domain 22 272 IPR001220 GO:0030246(InterPro)
Cre04g0897 681 Pfam Protein kinase domain 346 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g0897 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g0897 681 FunFam Lectin-domain containing receptor kinase A4.3 330 421 - -
Cre04g0897 681 CDD STKc_IRAK 351 616 - -
Cre04g0897 681 Gene3D Phosphorylase Kinase; domain 1 330 421 - -
Cre04g0897 681 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 277 IPR013320 -
Cre04g0897 681 ProSitePatterns Protein kinases ATP-binding region signature. 351 375 IPR017441 GO:0005524(InterPro)
Cre04g0897 681 SMART serkin_6 345 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g0897 681 PANTHER - 24 628 IPR050528 GO:0002229(PANTHER)|GO:0004675(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0897 Cre-Chr4:27646271 Cre10g2241 Cre-Chr10:36800090 1.40E-188 dispersed
Cre04g0895 Cre-Chr4:27621717 Cre04g0897 Cre-Chr4:27646271 2.10E-168 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64040 PF00069 Pkinase 1.20E-48 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0897 - - - 0.0