Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0909 ATGGCTTCTCTCTCTCTCCTCTGGTCCATTGCCTTCGCTTCTTTCTCCTCCCTCTTCCTCCTCTCTCACGCCAGAATCCCCGGTGTCTACTCCGGCGGCCCCTGGCAGGACGCTCATGCCACCTTCTATGGCGGCAGTGATGCCTCCGGAACCATGGGTGGTGCTTGTGGGTATGGGAATCTCTACAGCCAGGGCTATGGCGTCAACACAGCCGCCCTCAGTACTGCTCTCTTCAACAATGGCTTAAGCTGTGGTGCTTGCTTCGAGATCAAGTGTGCTAATGACCCTAGATGGTGCCATCCTGGTAGCCCATCCATTTTCATTACAGCTACCAATTTTTGTCCCCCGAATTTCGCACTGCCAAATGACAATGGCGGTTGGTGTAACCCTCCTCGTACTCATTTCGATCTCGCTATGCCTATGTTCCTCAAGATCGCTGAGTACCGCGCCGGAATCGTCCCCGTCACTTACCGCCGGGTGCCATGTAGGAAACAAGGGGGAATCAGATTCACAATCAACGGTTTCCGTTACTTCAACTTGGTATTGATCACCAACGTCGCGGGTGCAGGGGATATCGTGAAGGTTAGCGTCAAAGGATCAAACACCGATTGGATGAGCATGAGCCGTAACTGGGGGCAAAATTGGCAATCCAACTCTGTTTTGGTGGGTCAGGCCCTTTCCTTCCGCGTCACCGGCAGTGACCGTCGTACCTCAACTTCATGGAACGTGGCACCATCTAATTGGCAGTTCGGTCAGACCTTCACGGGAAAGAATTTCCGCGTTTGA 786 53.44 MASLSLLWSIAFASFSSLFLLSHARIPGVYSGGPWQDAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHPGSPSIFITATNFCPPNFALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVTYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKVSVKGSNTDWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27752284 27753737 + CrPI670011_04g009090.1 Cre04g0909 495213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0909 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 256 IPR007117 -
Cre04g0909 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 167 IPR007112 -
Cre04g0909 261 SUPERFAMILY PHL pollen allergen 164 256 IPR036749 -
Cre04g0909 261 Pfam Lytic transglycolase 70 157 IPR009009 -
Cre04g0909 261 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576(InterPro)
Cre04g0909 261 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576(InterPro)
Cre04g0909 261 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576(InterPro)
Cre04g0909 261 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576(InterPro)
Cre04g0909 261 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576(InterPro)
Cre04g0909 261 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576(InterPro)
Cre04g0909 261 Gene3D - 167 259 IPR036749 -
Cre04g0909 261 Gene3D - 23 163 IPR036908 -
Cre04g0909 261 PRINTS Expansin signature 242 258 IPR002963 GO:0009664(InterPro)
Cre04g0909 261 PRINTS Expansin signature 142 155 IPR002963 GO:0009664(InterPro)
Cre04g0909 261 PRINTS Expansin signature 106 116 IPR002963 GO:0009664(InterPro)
Cre04g0909 261 PRINTS Expansin signature 125 142 IPR002963 GO:0009664(InterPro)
Cre04g0909 261 PRINTS Expansin signature 166 178 IPR002963 GO:0009664(InterPro)
Cre04g0909 261 PRINTS Expansin signature 92 103 IPR002963 GO:0009664(InterPro)
Cre04g0909 261 PRINTS Expansin signature 213 234 IPR002963 GO:0009664(InterPro)
Cre04g0909 261 PRINTS Expansin signature 65 79 IPR002963 GO:0009664(InterPro)
Cre04g0909 261 PRINTS Expansin signature 178 199 IPR002963 GO:0009664(InterPro)
Cre04g0909 261 Pfam Expansin C-terminal domain 168 245 IPR007117 -
Cre04g0909 261 FunFam Expansin 24 163 - -
Cre04g0909 261 SUPERFAMILY Barwin-like endoglucanases 34 185 IPR036908 -
Cre04g0909 261 CDD DPBB_EXPA_N 34 162 - -
Cre04g0909 261 PANTHER EXPANSIN-A15 17 259 IPR002963 GO:0009664(InterPro)
Cre04g0909 261 SMART dpbb_1 70 157 IPR007112 -
Cre04g0909 261 FunFam Expansin 167 259 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0909 Cre-Chr4:27752284 Cre07g0895 Cre-Chr7:7955803 1.70E-105 dispersed
Cre07g1084 Cre-Chr7:17503284 Cre04g0909 Cre-Chr4:27752284 1.30E-78 transposed
Cre01g0497 Cre-Chr1:4275432 Cre04g0909 Cre-Chr4:27752284 8.60E-114 wgd
Cre02g2314 Cre-Chr2:36638863 Cre04g0909 Cre-Chr4:27752284 9.60E-138 wgd
Cre03g0457 Cre-Chr3:3010152 Cre04g0909 Cre-Chr4:27752284 5.80E-135 wgd
Cre04g0909 Cre-Chr4:27752284 Cre07g0690 Cre-Chr7:4766594 1.80E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0909 - - - 0.0