Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0912 ATGGGGGTGGGTAATGGGATGTCCATACAGATTGATCCGAGTGGGCAATGGGATGTTGATAAGGTTTGTCATGGTTCTTTAGAGGAAGAGGCGCATTTGATTCTATCAATACCAGTTAATGGGCTTAAAAGGGAGGATGATATTTTTGGGGGTTTTGATAAGAAGGGTATGTTTTTGGTGAAAAGTGCATACCAATTGGGGTCGAGGGACAAGGGATCTTTGTCTCTAATGAGGCTAGATGGCTGTTTGGAAAGGGATCTAGGGACTTCGATGGATCATGTGGGTTGGGTTTGTTTGAATGGTCGTGCGAGTGAGCTTGATTTGCTCCTTGTGGCTTTGCGGCGAATTTGGAGCTTGAGCAATCAGGTGGTGTTCCAAAGGGGTGGGATTTTGATCCCTTTTCTGGATGGGGTAGGAGCCTTGGGGTGGGTTTTGAGGGATCAAGCTGGGTGGCTTAGGCGCACTATCCTCTCTCACACTGAGAGACACAGAGTATTATGCAATGATCAATCAAATCAAACAGTACAGAAGATAAATTCTCTTTCTTTGAAGCCTTCCATTTTTTTTTTCTTTATTCATATGGGTAATCGTATTGGGAAGATTGGCCACTGTTTCGCCGGCGCCGGCGATATTTCCCGCCGTTATGATCCCGCCGACATTATCTCCGACCCACACGACGGGGGTTTCGGTCATTCCTTTTACTACCTCCCACCCGAACCACATACCCTCTCCTCCTCCAAAGATTTCTCCGACGACTACATCTCTCCGGCGACCATTTTCCGGTCGATTTCCGGCGCCTCTGTGAGTGCCAACGTCTCAACGCCGCTCTCCACTTCTCTTGTCGATCTCTATCCTTACAGCACCACGTTTGATCGGGCCGCAGCTTTCGATTGCTCGAATTCCTTCGCCTCCGTGCCGTTGCAGCCGGTGCCTCGCCAGTCGGTGTCGGGAAATTCCGGCGGATTCCCTTCTTCGGGTCCACTGGAGAGAGGGTTTTTATCTGGACCTTTGGCCGCCAGGACCTTCGAATCGGGTCCGATTGATCGAGTGGTTTATTCCGGTCCGATTGAGAAGGGTGGTGGACCCGAGAAATTGCAAAGGAACGTCTCTCATGGCGGCGTCGGAGACAGAGAACCGAAATCGAAAAGAAGAAGAAGAAGAAGAAGTCTTATTCGGATTCTGAAGAGAGCCATATCCAAAACCATTTCTCGAAACCAGAAGGCAGCGACTAAGAGAGTGAGAGAATCGGAATCGTACAAGCATAATGAAAATGCTGCAGCTTCTGCAGCTCAGACTCAGAGCAGTGTCCATTTGAGCAGCCATGCGAGCTTGGCTCAGGAAGACGACGGCGATTATTTTCTCGGCGGTCAGAGCGTGCAGTGGGCGCAGGGGAAAGCCGGTGAGGATAGAGTTCACGTGGTGATATCGGAGGATAATGGTTGGGTTTTCGTCGGAATTTATGATGGATTCAACGGTCCTGATGCTCCTGATTACTTACTTGCTAATCTCTACACTGCCGTTCTTAAAGAACTCAAGGGTTTGATTTGGAGTGATAAGTTTGATTCGACGGCAACTTCATCTTCCATGAACTCATCCAACTCTGCTTCAATTGAGGAAGACGATCATGGAACAACTCACATGAAAAATCAGGAGAATGATCATCAATCGACAGAGAACTTCTCAGCACAAAATGGGGTTGTGAATTTGGAGGCTGATTCAGTGAGGACAAGAGAGAGAGTTTATAATACGAACTATAGGACGAGTCAGCTGATGAAGAAGGCTGATCAGAATCCAAAGAATTGGAAATGTGAATGGGAAAGGGAAAGATTAGGATTAGAGGGGAAGTTGAACAATAGACAATTAGATCACCACCAAATATGGGATGAATCAACAGCCATCAATCATTCTGAGGTGTTGAATGCTCTGTCTCAAGCTTTGAGAAAAACAGAGGAAGCATATCTGCAGAATGCAGACAAGATGGTCACAAGAAATCCTGAGCTAGCTCTTATGGGTTCTTGTGTTTTGGTTATGTTGATGAGAGGAGAAGATGTCTACTTGATGAATGTAGGAGACAGCCGCGCAATTGTAGCACAGCAATTTGAACCGGATTTCGGGACTGGAAAGCCATACAGAGACTTAGAGAGAATCAACGAAGGAGCACTACGAGTATTTGAATCCTCTAATGGACTAGAGTTTGAAAGATTAAAAGCCTTGGCTTCCCATCAGCTTACGATGGACCATAGCACTTACACAGAGGAGGAAGTTCAGAGGATCAAGAATGCTCATCCTGATGACGCTTCCGCAATTATGAATGACAGGGTGAAAGGTTATTTGAAGATCACGCGGGCGTTCGGAGCTGGCTTTCTGAAACAGCCAAAGTGGAATGATGCATTGCTAGAGATGTTCAGAATAGACTATGTGGGAAATTCACCTTACATCACCTGTGATCCAACTCTGTGCCATTATAAACTCAGCCCAACAGACAGATTCTTGATATTGTCCTCTGATGGACTCTACCAGTACATTACCAATGAAGAAGCTGTTGCTCAAGTAGAGTCCTTCATTGCTTCTTTTCCTGAAGGAGACCCTGCTCAAAATCTAATTGAAGAAGTATTGTTCCGAGCAGCTAAAAAATACGGAATGGACTTCCATGAGCTGCTTGATATCCCACAAGGGGAGCGGCGGAAGTACCACGATGACGTTTCGGTTTTCTTTCTAAAATATTCTTGGAAATGGAAGTCTTGGCCAGATTGCAAAAGCATCCATCACAGGCTGAGTTGTTCATTTGGCAATGGAAAAGGTAGGGAGACAAAGGTAAGTGCCGCCCGCCAAATGCTGTGGAGAAGGAATAGATTGGTAGGCCAGAACATAATGAGATATAAACTTAATACACCCCTTCACTTTCTCCCCACCCCACCACACATTCCAATATTGGAGAAGGCTCCTGAGAAATTTGGAAGTTCTTGGTCAGTTTCAAGGCTATGGAATTCTACTGTTGAATTCAAAAGGCAATATATGATTGATTTCTATGATGTTGGAGACAGACTCGTCTCCCTTCAACAGGAGCAGAAAGGCAGGGAGAACATCAGATCTTGTATGAAGCTTGTCTATGATGGTGTCTGTTACTATCATAAATCCATGGAAAGGAGGACCAGCACATCTCTTTTGACTTTTGCCACCGATGGATATTGA 3192 45.9 MGVGNGMSIQIDPSGQWDVDKVCHGSLEEEAHLILSIPVNGLKREDDIFGGFDKKGMFLVKSAYQLGSRDKGSLSLMRLDGCLERDLGTSMDHVGWVCLNGRASELDLLLVALRRIWSLSNQVVFQRGGILIPFLDGVGALGWVLRDQAGWLRRTILSHTERHRVLCNDQSNQTVQKINSLSLKPSIFFFFIHMGNRIGKIGHCFAGAGDISRRYDPADIISDPHDGGFGHSFYYLPPEPHTLSSSKDFSDDYISPATIFRSISGASVSANVSTPLSTSLVDLYPYSTTFDRAAAFDCSNSFASVPLQPVPRQSVSGNSGGFPSSGPLERGFLSGPLAARTFESGPIDRVVYSGPIEKGGGPEKLQRNVSHGGVGDREPKSKRRRRRRSLIRILKRAISKTISRNQKAATKRVRESESYKHNENAAASAAQTQSSVHLSSHASLAQEDDGDYFLGGQSVQWAQGKAGEDRVHVVISEDNGWVFVGIYDGFNGPDAPDYLLANLYTAVLKELKGLIWSDKFDSTATSSSMNSSNSASIEEDDHGTTHMKNQENDHQSTENFSAQNGVVNLEADSVRTRERVYNTNYRTSQLMKKADQNPKNWKCEWERERLGLEGKLNNRQLDHHQIWDESTAINHSEVLNALSQALRKTEEAYLQNADKMVTRNPELALMGSCVLVMLMRGEDVYLMNVGDSRAIVAQQFEPDFGTGKPYRDLERINEGALRVFESSNGLEFERLKALASHQLTMDHSTYTEEEVQRIKNAHPDDASAIMNDRVKGYLKITRAFGAGFLKQPKWNDALLEMFRIDYVGNSPYITCDPTLCHYKLSPTDRFLILSSDGLYQYITNEEAVAQVESFIASFPEGDPAQNLIEEVLFRAAKKYGMDFHELLDIPQGERRKYHDDVSVFFLKYSWKWKSWPDCKSIHHRLSCSFGNGKGRETKVSAARQMLWRRNRLVGQNIMRYKLNTPLHFLPTPPHIPILEKAPEKFGSSWSVSRLWNSTVEFKRQYMIDFYDVGDRLVSLQQEQKGRENIRSCMKLVYDGVCYYHKSMERRTSTSLLTFATDGY 1063
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27800486 27808847 + CrPI670011_04g009120.1 Cre04g0912 495216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0912 1063 Gene3D - 420 911 IPR036457 -
Cre04g0912 1063 MobiDBLite consensus disorder prediction 402 441 - -
Cre04g0912 1063 MobiDBLite consensus disorder prediction 554 568 - -
Cre04g0912 1063 FunFam Protein phosphatase 2C 29 605 915 - -
Cre04g0912 1063 SMART PP2C_4 442 906 IPR001932 -
Cre04g0912 1063 PANTHER PROTEIN PHOSPHATASE 2C 431 906 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Cre04g0912 1063 MobiDBLite consensus disorder prediction 539 553 - -
Cre04g0912 1063 CDD PP2Cc 627 903 IPR001932 -
Cre04g0912 1063 ProSiteProfiles PPM-type phosphatase domain profile. 453 908 IPR001932 -
Cre04g0912 1063 MobiDBLite consensus disorder prediction 353 388 - -
Cre04g0912 1063 SUPERFAMILY PP2C-like 464 905 IPR036457 -
Cre04g0912 1063 MobiDBLite consensus disorder prediction 523 568 - -
Cre04g0912 1063 MobiDBLite consensus disorder prediction 422 441 - -
Cre04g0912 1063 Pfam Protein phosphatase 2C 618 878 IPR001932 -
Cre04g0912 1063 MobiDBLite consensus disorder prediction 523 538 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1185 Cre-Chr1:24032225 Cre04g0912 Cre-Chr4:27800486 8.30E-15 dispersed
Cre04g0912 Cre-Chr4:27800486 Cre10g0436 Cre-Chr10:3246203 2.80E-119 dispersed
Cre05g0741 Cre-Chr5:6587051 Cre04g0912 Cre-Chr4:27800486 1.10E-63 transposed
Cre02g2322 Cre-Chr2:36713279 Cre04g0912 Cre-Chr4:27800486 1.10E-196 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0912 - - - 0.0