Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0923 ATGGTATTTCCTTCCATTCCATCTAATTATCTTGATCCAACAACAACCCATCAATGGCATCAGCAAACAGCAAGCCAACAATCTGGGAGTAGCAGTTTTCAGCTGGCGGGGTCACCAGCACCGCCACAAGTTCGGCCGGTGTCTATGGCAGATCGGGCTCGAATGGCGAACCTGCCGGTGCCGGAGACGGCACTGAAGTGTCCAAGATGTGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTATAGCCTCTCTCAGCCCCGCCATTTCTGCAAGACCTGCCGCCGCTACTGGACCAGAGGTGGCGCTCTCAGAAGCGTCCCGGTCGGCGGCGGCTACCGCCGGAATACTAAAAGAACCAAAAGTACCTCTAAATCTCCGGTTAACTCCCAATGTCAACCTACTACTACTGAGGTTTCAGGAGGAGAAGCAATGAGATTAAATTACAATAATGCCATTTCCACACAAAATGAAGGAGCTGTGGATTCAACTCATCATCCCATTGGGATAGCCAACTTTTTAGGGTTTGATCAAATTCAATGGCGACCACAGCTTCAACTTCACCAAACACAACAGTCCCCATTGCTTGTAAATTCAGCTCGGTTGCTCGGAAACGGTGGCATCGAGGCATCGCCGAGCTATAGCATCGTCAGACAGATTCAAAAGAAGATGGAAGCGACGACGAAAATGGAGGAAGATGGGCAACAAGTAGAGATGAATGTTGCAAAGCCATTTTGGGGAGTTGTTGGAGGAAGTGATCATCGCCATTATTGGAGTGGTTTTAATCCTTCATCTTCTTCCCATTCATAA 813 47.85 MVFPSIPSNYLDPTTTHQWHQQTASQQSGSSSFQLAGSPAPPQVRPVSMADRARMANLPVPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNTKRTKSTSKSPVNSQCQPTTTEVSGGEAMRLNYNNAISTQNEGAVDSTHHPIGIANFLGFDQIQWRPQLQLHQTQQSPLLVNSARLLGNGGIEASPSYSIVRQIQKKMEATTKMEEDGQQVEMNVAKPFWGVVGGSDHRHYWSGFNPSSSSHS 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27900575 27902106 - CrPI670011_04g009230.1 Cre04g0923 495227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0923 270 MobiDBLite consensus disorder prediction 22 45 - -
Cre04g0923 270 Pfam Dof domain, zinc finger 64 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre04g0923 270 MobiDBLite consensus disorder prediction 110 141 - -
Cre04g0923 270 MobiDBLite consensus disorder prediction 123 141 - -
Cre04g0923 270 MobiDBLite consensus disorder prediction 22 38 - -
Cre04g0923 270 ProSitePatterns Zinc finger Dof-type signature. 67 103 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre04g0923 270 ProSiteProfiles Zinc finger Dof-type profile. 65 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre04g0923 270 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 52 190 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0923 Cre-Chr4:27900575 Cre04g1925 Cre-Chr4:36794076 4.60E-26 dispersed
Cre01g0476 Cre-Chr1:4125629 Cre04g0923 Cre-Chr4:27900575 5.50E-35 wgd
Cre10g2214 Cre-Chr10:36623748 Cre04g0923 Cre-Chr4:27900575 4.00E-38 wgd
Cre02g2330 Cre-Chr2:36784936 Cre04g0923 Cre-Chr4:27900575 2.80E-36 wgd
Cre03g0474 Cre-Chr3:3153121 Cre04g0923 Cre-Chr4:27900575 1.40E-35 wgd
Cre04g0923 Cre-Chr4:27900575 Cre07g0681 Cre-Chr7:4608318 3.10E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53424 PF02701 zf-Dof 3.50E-31 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0923 - - - 0.0