Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0923 ATGGTATTTCCTTCCATTCCATCTAATTATCTTGATCCAACAACAACCCATCAATGGCATCAGCAAACAGCAAGCCAACAATCTGGGAGTAGCAGTTTTCAGCTGGCGGGGTCACCAGCACCGCCACAAGTTCGGCCGGTGTCTATGGCAGATCGGGCTCGAATGGCGAACCTGCCGGTGCCGGAGACGGCACTGAAGTGTCCAAGATGTGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTATAGCCTCTCTCAGCCCCGCCATTTCTGCAAGACCTGCCGCCGCTACTGGACCAGAGGTGGCGCTCTCAGAAGCGTCCCGGTCGGCGGCGGCTACCGCCGGAATACTAAAAGAACCAAAAGTACCTCTAAATCTCCGGTTAACTCCCAATGTCAACCTACTACTACTGAGGTTTCAGGAGGAGAAGCAATGAGATTAAATTACAATAATGCCATTTCCACACAAAATGAAGGAGCTGTGGATTCAACTCATCATCCCATTGGGATAGCCAACTTTTTAGGGTTTGATCAAATTCAATGGCGACCACAGCTTCAACTTCACCAAACACAACAGTCCCCATTGCTTGTAAATTCAGCTCGGTTGCTCGGAAACGGTGGCATCGAGGCATCGCCGAGCTATAGCATCGTCAGACAGATTCAAAAGAAGATGGAAGCGACGACGAAAATGGAGGAAGATGGGCAACAAGTAGAGATGAATGTTGCAAAGCCATTTTGGGGAGTTGTTGGAGGAAGTGATCATCGCCATTATTGGAGTGGTTTTAATCCTTCATCTTCTTCCCATTCATAA 813 47.85 MVFPSIPSNYLDPTTTHQWHQQTASQQSGSSSFQLAGSPAPPQVRPVSMADRARMANLPVPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNTKRTKSTSKSPVNSQCQPTTTEVSGGEAMRLNYNNAISTQNEGAVDSTHHPIGIANFLGFDQIQWRPQLQLHQTQQSPLLVNSARLLGNGGIEASPSYSIVRQIQKKMEATTKMEEDGQQVEMNVAKPFWGVVGGSDHRHYWSGFNPSSSSHS 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27900575 27902106 - CrPI670011_04g009230.1 Cre04g0923 495227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0923 270 MobiDBLite consensus disorder prediction 22 45 - -
Cre04g0923 270 Pfam Dof domain, zinc finger 64 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre04g0923 270 MobiDBLite consensus disorder prediction 110 141 - -
Cre04g0923 270 MobiDBLite consensus disorder prediction 123 141 - -
Cre04g0923 270 MobiDBLite consensus disorder prediction 22 38 - -
Cre04g0923 270 ProSitePatterns Zinc finger Dof-type signature. 67 103 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre04g0923 270 ProSiteProfiles Zinc finger Dof-type profile. 65 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre04g0923 270 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 52 190 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0923 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0923 Cre-Chr4:27900575 Cre04g1925 Cre-Chr4:36794076 4.60E-26 dispersed
Cre01g0476 Cre-Chr1:4125629 Cre04g0923 Cre-Chr4:27900575 5.50E-35 wgd
Cre10g2214 Cre-Chr10:36623748 Cre04g0923 Cre-Chr4:27900575 4.00E-38 wgd
Cre02g2330 Cre-Chr2:36784936 Cre04g0923 Cre-Chr4:27900575 2.80E-36 wgd
Cre03g0474 Cre-Chr3:3153121 Cre04g0923 Cre-Chr4:27900575 1.40E-35 wgd
Cre04g0923 Cre-Chr4:27900575 Cre07g0681 Cre-Chr7:4608318 3.10E-38 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre03g0949 . 17 178 C2C2-Dof Transcription Factor Family AT1G29160 57.4 8.5e-45 177.2
Cre04g1984 . 6 159 C2C2-Dof Transcription Factor Family AT1G29160 52.6 3.7e-40 161.8
Cre09g2346 . 1 96 C2C2-Dof Transcription Factor Family AT1G64620 76.7 4.6e-42 169.1
Cre03g0949 . 17 178 C2C2-Dof Transcription Factor Family AT2G34140 55.6 2.6e-43 172.2
Cre04g1984 . 6 159 C2C2-Dof Transcription Factor Family AT2G34140 50.3 5.7e-38 154.5
Cre10g2214 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 66.7 1.4e-40 164.1
Cre01g0476 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 60.4 2.2e-38 156.8
Cre07g0681 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 64.1 2.9e-38 156.4
Cre03g0474 . 67 141 C2C2-Dof Transcription Factor Family AT2G37590 89.3 5.5e-37 152.1
Cre09g2346 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 80.8 2.8e-44 176.4
Cre03g0474 . 60 141 C2C2-Dof Transcription Factor Family AT5G02460 86.6 1.2e-38 157.9
Cre01g0476 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 62.8 8.7e-37 151.8
Cre10g2214 . 54 136 C2C2-Dof Transcription Factor Family AT3G55370 81.9 2.1e-37 153.7
Cre03g0474 . 49 143 C2C2-Dof Transcription Factor Family AT3G55370 74.7 6.1e-37 152.1
Cre02g2330 . 57 205 C2C2-Dof Transcription Factor Family AT3G55370 54.0 8.0e-37 151.8
Cre04g0923 . 11 129 C2C2-Dof Transcription Factor Family AT3G55370 64.7 1.4e-36 151.0
Cre06g2403 . 28 325 C2C2-Dof Transcription Factor Family AT5G60850 53.8 2.1e-46 183.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012147 0 0 1 0 0 1 2 1 1 0 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53424 PF02701 zf-Dof 3.50E-31 No_clan Cre TF