Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0930 ATGAACATGAACATAAGCTCCATCAAAACAGCCTCCAATGGAGTATGGCAAGGTGATAATCCTCTCCACTTTGCTTTCCCTCTATTGATCCTTCAATCCGTCCTCATCCTTCTCCTTACTCGCTTCCTCGCCCTCCTCCTCAAGCCCCTCCGCCAGCCCAAAGTCATCGCCGAAATCGTCGGCGGGATTCTACTGGGTCCATCCGCTTTCGGGCGTAACAAAACTTATTTACACCATGTTTTCCCTCCATGGAGTACTCCCATTCTGGAATCCGTCGCAAGTATTGGTTTACTGTTTTTCCTCTTCCTCGTTGGACTCGAACTCGATTTCTCCTCCATCCGTCGTAGCGGTAGACGAGCTTTCGGAATTGCCTTAGCTGGAATCTCTGTTCCCTTCCTTTCTGGCATCGGTGTTGCCTTCGTCCTTCGTAAAACCGTCGACGGTGCTGATAAAGTCGGTTACGGTCAGTTCATTGTATTCATGGGTGTTGCTCTCTCCATCACTGCTTTTCCTGTTTTAGCTCGCATTTTAGCCGAACTCAAACTCCTCACTACCCAAGTCGGCGAAACCGCAATGGCCGCTGCCGCATTCAACGACGTTGCCGCTTGGATCCTCCTTGCACTCGCCGTTGCCTTGGCCGGTAACGGCGGTGAAGGCGGATCGCAAAAGAGTCCGTTGGTTTCCGTGTGGGTCTTACTTTCGGGAGCCGGCTTCGTGATTTTCATGATGATGGTCACTCGACCGGGAATGAAATGGGTGGCACGGCGGTGCTCGTACGAACACGACGCCGTGGACGAAGCCTATATCTGTTTGACGTTAGTCGGAGTGTTGGTTTCGGGATTTGTGACGGATTTGATCGGAATTCATTCGATTTTTGGGGGATTTATATTTGGATTGACGATTCCGAAAGGGGGAAGATTTGCGGAGAGATTGATTGAGAGAATTGAAGATTTCGTTTCGGGTCTTCTTCTTCCTCTGTATTTTGCTTCCAGTGGATTGAAGACGGATGTGGCCAAAATTAAAGGGGGAAAAGCTTGGGGGTTGCTGGCGCTGGTTATTTCGACGGCGTGCGCCGGTAAGATTCTGGCGACGTTTGTGGCGGCGATGGCGTTTTTGATACCGGCGAGGGAGGCGCTGGCGTTGGGGCTGCTTATGAACACCAAAGGCTTGGTTGAACTCATTGTGCTCAATATTGGGAAGGAGAAAAAGGTTCTTAACGACGAAGTATTCGCCATATTAGTGCTGATGGCACTATTCACAACATTCATCACCACCCCCACCGTGATGGCGGTTTACAAGCCAGCCCGCGGCGGCTCCACCCCGCCTACGCACCGTAAACTCCGCGACCTCTCCGCCGACGACTCCACTGTCGATGACGAGCTCCGAATCCTGGCTTGCCTCCACAGCTCCGGCAACGTGCCGTCCCTCATCACCCTGACGGAGTCAACTCGCAGCACCAAAAATTCCTCCCTCAAACTCTTCGTGATGCACCTGGTTGAACTCACCGAGAGATCCTCTTCCATAATGATGGTCCAACGCGCCCGCAAAAACGGCTTCCCTTTCTTCGCCCGGTTCCGCAAGGCCAGCGAGTGGCGGGACCAAATGGCTGCGGCCTTTCAGGCCTACAGCCAATTGGGCCGAGTCAAGGTCCGGCCCACTACGGCGGTCTCTTCCTTAGCTACTATGCATGAGGATATCTGCCACGTGGCGGATGATAAGAGGGTCACTATGATCATCTTGCCGTTTCATCGGAATTGGAGGGTGTTTGGCGGTGGCGACGACAAGGAGGAGGTGGAGGAGAATGTGGGCCATGGCTGGAGAGTTGTGAACCAACGGGTTTTGAAGAATGCCCCTTGCTCTGTGGCGGTTCTTGTGGACCGTGGATTTGGGGCCGCGGCGGCCCAGACGCCTGGGCCTGGGCCCATAGTTGGTGTGGGCCAAAGAATTTGTGTTGTATTTTTTGGTGGGCCTGATGATCGGGAGGCGCTGGAGTTGGGGGGCCGGATGGCGGAGCATCCGGCGGTGAAGGTCACGGTGGTCAGGTTTCGGCCGACGTCGACGGATGGGATGGAGGGTAGTAATGTCATTTTACGTCCCATGCATTCGAAATCGGGTGACAACCATTATAGCTTCACTACCACTCCAATCAACCGGGAAAAAGAAAAGGAGCAAGATGATGCAGCATTGGGAGAATTCAGAAGCAAATGGGATGCAACAGTTGAGTACATAGAGAAGGAGGTAAGCAACATGAACATGATAGTTGAAGGGGTGGTGAGCCTCGGAAAGGAAGGCGGTTACGACCTAATCGTGGTCGGGAGGGGTCGGGTTCCCTCGAGCATGGTGGCGAAATTAGCGGACCGACCCGCGGAACATGCCGAGTTGGGGCCAGTAGGGGACATATTGGCTAGCTCCGGCAAGGGAATAGTATCTTCAATACTAATAATTCAACAACATGGAGGAGGTGCTCATGGAGAAGAAACTCCAGTTTTGAAGATAGCACAATCCAATAAGAATGAGCAGGCTTTGTCAACTGATGGAGCTTTAATTGATCATGTATAA 2559 52.68 MNMNISSIKTASNGVWQGDNPLHFAFPLLILQSVLILLLTRFLALLLKPLRQPKVIAEIVGGILLGPSAFGRNKTYLHHVFPPWSTPILESVASIGLLFFLFLVGLELDFSSIRRSGRRAFGIALAGISVPFLSGIGVAFVLRKTVDGADKVGYGQFIVFMGVALSITAFPVLARILAELKLLTTQVGETAMAAAAFNDVAAWILLALAVALAGNGGEGGSQKSPLVSVWVLLSGAGFVIFMMMVTRPGMKWVARRCSYEHDAVDEAYICLTLVGVLVSGFVTDLIGIHSIFGGFIFGLTIPKGGRFAERLIERIEDFVSGLLLPLYFASSGLKTDVAKIKGGKAWGLLALVISTACAGKILATFVAAMAFLIPAREALALGLLMNTKGLVELIVLNIGKEKKVLNDEVFAILVLMALFTTFITTPTVMAVYKPARGGSTPPTHRKLRDLSADDSTVDDELRILACLHSSGNVPSLITLTESTRSTKNSSLKLFVMHLVELTERSSSIMMVQRARKNGFPFFARFRKASEWRDQMAAAFQAYSQLGRVKVRPTTAVSSLATMHEDICHVADDKRVTMIILPFHRNWRVFGGGDDKEEVEENVGHGWRVVNQRVLKNAPCSVAVLVDRGFGAAAAQTPGPGPIVGVGQRICVVFFGGPDDREALELGGRMAEHPAVKVTVVRFRPTSTDGMEGSNVILRPMHSKSGDNHYSFTTTPINREKEKEQDDAALGEFRSKWDATVEYIEKEVSNMNMIVEGVVSLGKEGGYDLIVVGRGRVPSSMVAKLADRPAEHAELGPVGDILASSGKGIVSSILIIQQHGGGAHGEETPVLKIAQSNKNEQALSTDGALIDHV 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27977533 27982998 + CrPI670011_04g009300.1 Cre04g0930 495234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0930 852 FunFam Cation/H(+) antiporter 15 28 438 - -
Cre04g0930 852 Gene3D - 28 436 IPR038770 -
Cre04g0930 852 Pfam Sodium/hydrogen exchanger family 38 428 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Cre04g0930 852 Gene3D - 462 795 - -
Cre04g0930 852 PANTHER CATION/H + ANTIPORTER 9 822 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0930 Cre-Chr4:27977533 Cre07g1119 Cre-Chr7:22249678 5.60E-211 dispersed
Cre04g0930 Cre-Chr4:27977533 Cre03g0362 Cre-Chr3:2008753 2.50E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0930 K26731 - csv:101207589 1476.84