Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0930 ATGAACATGAACATAAGCTCCATCAAAACAGCCTCCAATGGAGTATGGCAAGGTGATAATCCTCTCCACTTTGCTTTCCCTCTATTGATCCTTCAATCCGTCCTCATCCTTCTCCTTACTCGCTTCCTCGCCCTCCTCCTCAAGCCCCTCCGCCAGCCCAAAGTCATCGCCGAAATCGTCGGCGGGATTCTACTGGGTCCATCCGCTTTCGGGCGTAACAAAACTTATTTACACCATGTTTTCCCTCCATGGAGTACTCCCATTCTGGAATCCGTCGCAAGTATTGGTTTACTGTTTTTCCTCTTCCTCGTTGGACTCGAACTCGATTTCTCCTCCATCCGTCGTAGCGGTAGACGAGCTTTCGGAATTGCCTTAGCTGGAATCTCTGTTCCCTTCCTTTCTGGCATCGGTGTTGCCTTCGTCCTTCGTAAAACCGTCGACGGTGCTGATAAAGTCGGTTACGGTCAGTTCATTGTATTCATGGGTGTTGCTCTCTCCATCACTGCTTTTCCTGTTTTAGCTCGCATTTTAGCCGAACTCAAACTCCTCACTACCCAAGTCGGCGAAACCGCAATGGCCGCTGCCGCATTCAACGACGTTGCCGCTTGGATCCTCCTTGCACTCGCCGTTGCCTTGGCCGGTAACGGCGGTGAAGGCGGATCGCAAAAGAGTCCGTTGGTTTCCGTGTGGGTCTTACTTTCGGGAGCCGGCTTCGTGATTTTCATGATGATGGTCACTCGACCGGGAATGAAATGGGTGGCACGGCGGTGCTCGTACGAACACGACGCCGTGGACGAAGCCTATATCTGTTTGACGTTAGTCGGAGTGTTGGTTTCGGGATTTGTGACGGATTTGATCGGAATTCATTCGATTTTTGGGGGATTTATATTTGGATTGACGATTCCGAAAGGGGGAAGATTTGCGGAGAGATTGATTGAGAGAATTGAAGATTTCGTTTCGGGTCTTCTTCTTCCTCTGTATTTTGCTTCCAGTGGATTGAAGACGGATGTGGCCAAAATTAAAGGGGGAAAAGCTTGGGGGTTGCTGGCGCTGGTTATTTCGACGGCGTGCGCCGGTAAGATTCTGGCGACGTTTGTGGCGGCGATGGCGTTTTTGATACCGGCGAGGGAGGCGCTGGCGTTGGGGCTGCTTATGAACACCAAAGGCTTGGTTGAACTCATTGTGCTCAATATTGGGAAGGAGAAAAAGGTTCTTAACGACGAAGTATTCGCCATATTAGTGCTGATGGCACTATTCACAACATTCATCACCACCCCCACCGTGATGGCGGTTTACAAGCCAGCCCGCGGCGGCTCCACCCCGCCTACGCACCGTAAACTCCGCGACCTCTCCGCCGACGACTCCACTGTCGATGACGAGCTCCGAATCCTGGCTTGCCTCCACAGCTCCGGCAACGTGCCGTCCCTCATCACCCTGACGGAGTCAACTCGCAGCACCAAAAATTCCTCCCTCAAACTCTTCGTGATGCACCTGGTTGAACTCACCGAGAGATCCTCTTCCATAATGATGGTCCAACGCGCCCGCAAAAACGGCTTCCCTTTCTTCGCCCGGTTCCGCAAGGCCAGCGAGTGGCGGGACCAAATGGCTGCGGCCTTTCAGGCCTACAGCCAATTGGGCCGAGTCAAGGTCCGGCCCACTACGGCGGTCTCTTCCTTAGCTACTATGCATGAGGATATCTGCCACGTGGCGGATGATAAGAGGGTCACTATGATCATCTTGCCGTTTCATCGGAATTGGAGGGTGTTTGGCGGTGGCGACGACAAGGAGGAGGTGGAGGAGAATGTGGGCCATGGCTGGAGAGTTGTGAACCAACGGGTTTTGAAGAATGCCCCTTGCTCTGTGGCGGTTCTTGTGGACCGTGGATTTGGGGCCGCGGCGGCCCAGACGCCTGGGCCTGGGCCCATAGTTGGTGTGGGCCAAAGAATTTGTGTTGTATTTTTTGGTGGGCCTGATGATCGGGAGGCGCTGGAGTTGGGGGGCCGGATGGCGGAGCATCCGGCGGTGAAGGTCACGGTGGTCAGGTTTCGGCCGACGTCGACGGATGGGATGGAGGGTAGTAATGTCATTTTACGTCCCATGCATTCGAAATCGGGTGACAACCATTATAGCTTCACTACCACTCCAATCAACCGGGAAAAAGAAAAGGAGCAAGATGATGCAGCATTGGGAGAATTCAGAAGCAAATGGGATGCAACAGTTGAGTACATAGAGAAGGAGGTAAGCAACATGAACATGATAGTTGAAGGGGTGGTGAGCCTCGGAAAGGAAGGCGGTTACGACCTAATCGTGGTCGGGAGGGGTCGGGTTCCCTCGAGCATGGTGGCGAAATTAGCGGACCGACCCGCGGAACATGCCGAGTTGGGGCCAGTAGGGGACATATTGGCTAGCTCCGGCAAGGGAATAGTATCTTCAATACTAATAATTCAACAACATGGAGGAGGTGCTCATGGAGAAGAAACTCCAGTTTTGAAGATAGCACAATCCAATAAGAATGAGCAGGCTTTGTCAACTGATGGAGCTTTAATTGATCATGTATAA 2559 52.68 MNMNISSIKTASNGVWQGDNPLHFAFPLLILQSVLILLLTRFLALLLKPLRQPKVIAEIVGGILLGPSAFGRNKTYLHHVFPPWSTPILESVASIGLLFFLFLVGLELDFSSIRRSGRRAFGIALAGISVPFLSGIGVAFVLRKTVDGADKVGYGQFIVFMGVALSITAFPVLARILAELKLLTTQVGETAMAAAAFNDVAAWILLALAVALAGNGGEGGSQKSPLVSVWVLLSGAGFVIFMMMVTRPGMKWVARRCSYEHDAVDEAYICLTLVGVLVSGFVTDLIGIHSIFGGFIFGLTIPKGGRFAERLIERIEDFVSGLLLPLYFASSGLKTDVAKIKGGKAWGLLALVISTACAGKILATFVAAMAFLIPAREALALGLLMNTKGLVELIVLNIGKEKKVLNDEVFAILVLMALFTTFITTPTVMAVYKPARGGSTPPTHRKLRDLSADDSTVDDELRILACLHSSGNVPSLITLTESTRSTKNSSLKLFVMHLVELTERSSSIMMVQRARKNGFPFFARFRKASEWRDQMAAAFQAYSQLGRVKVRPTTAVSSLATMHEDICHVADDKRVTMIILPFHRNWRVFGGGDDKEEVEENVGHGWRVVNQRVLKNAPCSVAVLVDRGFGAAAAQTPGPGPIVGVGQRICVVFFGGPDDREALELGGRMAEHPAVKVTVVRFRPTSTDGMEGSNVILRPMHSKSGDNHYSFTTTPINREKEKEQDDAALGEFRSKWDATVEYIEKEVSNMNMIVEGVVSLGKEGGYDLIVVGRGRVPSSMVAKLADRPAEHAELGPVGDILASSGKGIVSSILIIQQHGGGAHGEETPVLKIAQSNKNEQALSTDGALIDHV 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27977533 27982998 + CrPI670011_04g009300.1 Cre04g0930 495234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0930 852 FunFam Cation/H(+) antiporter 15 28 438 - -
Cre04g0930 852 Gene3D - 28 436 IPR038770 -
Cre04g0930 852 Pfam Sodium/hydrogen exchanger family 38 428 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Cre04g0930 852 Gene3D - 462 795 - -
Cre04g0930 852 PANTHER CATION/H + ANTIPORTER 9 822 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0930 K26731 - - csv:101207589 1476.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0930 Cre-Chr4:27977533 Cre07g1119 Cre-Chr7:22249678 5.60E-211 dispersed
Cre04g0930 Cre-Chr4:27977533 Cre03g0362 Cre-Chr3:2008753 2.50E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g700 Blo01g01126 . Bda01g00243 . . . . . . . Cma03g00436 . Car03g00383 . Sed14g0469 . . Bhi03g01986 Tan03g0976 Cmetu08g1910 . . . . Cla04g00826 Cam04g0889 Cec04g0974 Cco04g1032 Clacu04g0882 Cmu04g0873 Cre04g0930 . Cone10ag0299 . . . Csa04g01471 Chy08g00771 . . . . . . . Bma01g01881 . . Cmo03g00449 . . . . . . Cpe19g00367 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre02g0393 . 4 822 Antiporter Super Family AT2G13620 70.6 0.0e+00 1152.9
Cre07g1116 . 50 824 Antiporter Super Family AT2G13620 50.4 1.5e-208 723.4
Cre02g0391 . 1 175 Antiporter Super Family AT2G13620 54.7 2.4e-49 194.5
Cre04g0930 . 76 846 Antiporter Super Family AT3G53720 68.9 3.6e-289 991.1
Cre07g1116 . 122 821 Antiporter Super Family AT3G53720 50.4 6.5e-182 634.8
Cre07g1122 . 1 779 Antiporter Super Family AT5G41610 69.9 1.5e-309 1058.9
Cre07g1119 . 7 774 Antiporter Super Family AT5G41610 68.0 1.2e-298 1022.7
Cre07g1116 . 40 824 Antiporter Super Family AT5G41610 66.8 4.1e-296 1014.2
Cre07g1114 . 1 780 Antiporter Super Family AT5G41610 64.7 5.1e-286 980.7
Cre04g0930 . 8 820 Antiporter Super Family AT5G41610 50.9 8.6e-209 724.2
Cre07g1119 . 11 791 Antiporter Super Family AT4G23700 65.2 5.9e-290 993.8
Cre07g1116 . 49 841 Antiporter Super Family AT4G23700 64.2 2.6e-285 978.4
Cre07g1122 . 9 779 Antiporter Super Family AT4G23700 64.0 5.0e-281 964.1
Cre07g1114 . 11 778 Antiporter Super Family AT4G23700 63.0 1.8e-278 955.7
Cre07g1122 . 5 779 Antiporter Super Family AT3G17630 64.0 1.4e-272 936.0
Cre07g1116 . 47 822 Antiporter Super Family AT3G17630 62.4 4.3e-269 924.5
Cre07g1119 . 7 791 Antiporter Super Family AT3G17630 61.4 2.8e-268 921.8
Cre07g1114 . 7 778 Antiporter Super Family AT3G17630 61.1 2.8e-260 895.2
Cre04g0930 . 8 822 Antiporter Super Family AT3G17630 51.5 2.3e-206 716.1
Cre07g1119 . 1 775 Antiporter Super Family AT1G64170 57.8 1.1e-240 830.1
Cre07g1116 . 50 824 Antiporter Super Family AT1G64170 57.4 3.6e-239 825.1
Cre07g1122 . 15 782 Antiporter Super Family AT1G64170 56.9 9.4e-232 800.4
Cre07g1114 . 12 780 Antiporter Super Family AT1G64170 56.4 2.0e-229 792.7
Cre02g0393 . 4 822 Antiporter Super Family AT2G13620 70.6 0.0e+00 1152.9
Cre07g1116 . 50 824 Antiporter Super Family AT2G13620 50.4 1.5e-208 723.4
Cre02g0391 . 1 175 Antiporter Super Family AT2G13620 54.7 2.4e-49 194.5
Cre07g1119 . 1 775 Antiporter Super Family AT1G64170 57.8 1.1e-240 830.1
Cre07g1116 . 50 824 Antiporter Super Family AT1G64170 57.4 3.6e-239 825.1
Cre07g1122 . 15 782 Antiporter Super Family AT1G64170 56.9 9.4e-232 800.4
Cre07g1114 . 12 780 Antiporter Super Family AT1G64170 56.4 2.0e-229 792.7
Cre07g1119 . 11 791 Antiporter Super Family AT4G23700 65.2 5.9e-290 993.8
Cre07g1116 . 49 841 Antiporter Super Family AT4G23700 64.2 2.6e-285 978.4
Cre07g1122 . 9 779 Antiporter Super Family AT4G23700 64.0 5.0e-281 964.1
Cre07g1114 . 11 778 Antiporter Super Family AT4G23700 63.0 1.8e-278 955.7
Cre07g1122 . 1 779 Antiporter Super Family AT5G41610 69.9 1.5e-309 1058.9
Cre07g1119 . 7 774 Antiporter Super Family AT5G41610 68.0 1.2e-298 1022.7
Cre07g1116 . 40 824 Antiporter Super Family AT5G41610 66.8 4.1e-296 1014.2
Cre07g1114 . 1 780 Antiporter Super Family AT5G41610 64.7 5.1e-286 980.7
Cre04g0930 . 8 820 Antiporter Super Family AT5G41610 50.9 8.6e-209 724.2
Cre07g1122 . 5 779 Antiporter Super Family AT3G17630 64.0 1.4e-272 936.0
Cre07g1116 . 47 822 Antiporter Super Family AT3G17630 62.4 4.3e-269 924.5
Cre07g1119 . 7 791 Antiporter Super Family AT3G17630 61.4 2.8e-268 921.8
Cre07g1114 . 7 778 Antiporter Super Family AT3G17630 61.1 2.8e-260 895.2
Cre04g0930 . 8 822 Antiporter Super Family AT3G17630 51.5 2.3e-206 716.1
Cre04g0930 . 76 846 Antiporter Super Family AT3G53720 68.9 3.6e-289 991.1
Cre07g1116 . 122 821 Antiporter Super Family AT3G53720 50.4 6.5e-182 634.8
Cre09g0382 . 47 790 Antiporter Super Family AT3G52080 54.1 4.9e-233 804.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004121 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 3 3 1 2 1 2 2 43