Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0948 ATGGGTAACGCCCATGGCCACCGCAAGCATTTCAACCATGGCGTAAATACCTCTCCACCCACTAATAACGCTCCTTCTCCCTTCAATAAATACTCCTCATCTGAACCCACTTCTCGAAATTCCACCTCCACCTCGAAGATGGAGTCCTTGCCCTACGCCCATGTTGATTCCAGCCTGCGAGCCCTTGCCGCTCAGGCTGAGGGCTTTGGCCGCTCTGCCATTGGTGGTCTCCATGGTTCTGTTTATTGTGTCACTAATTTAGCAGATGATGGTCCGGGATCACTTAGGTTTGGATGTCGTAAGAAAGAGCCCCTTTGGATTATCTTTGAAGTTTCGGGCACAATTCACTTGTCTACATATCTGAGTGTATCATCGTACAAGACTGTAGACGGTCGTGGTCAAAGGATAAAACTTACAGGAAAGGGATTGAGGCTGAAGGAATGTGAGCATGTGATCATTTGCAATTTGGAGTTTGAAGGTGGCAGAGGTCATGATGTTGATGGAATTCAAATTAAGCCTAATTCAAAGCACATATGGATAGACCGTTGCAGCCTCCGAGACTATGATGATGGGTTGATTGATATCACCCGAGGAAGCACGGATATCACTATTTCTAGGTGTCACTTCTCACAGCATGACAAGACAATGCTCATCGGAGCAGATCCCTCTCACATTGGCGACCGATGTATCCGTGTCACTATCCACCATTGTTTTTTCGACGGTACACATCAACGGCATCCACGTGTTAGATATGCTCAAGTCCATCTATACAATAATTACACCAGAAACTGGGGGATCTATGCTGTCTGTGCTAGTGTAGAATCACAGATTTACTCTCAGTGCAACATATATGAAGCAGGAGCGAAAAAGGTGGCGTTTAAATATCTAACTGAAAAGGCAGCAGACAAAGAAGAACCCTCAAGTGGTTGCATATGGTCTGATGGAGACTTATTTGTAAATGGCACTCAAAGTGGGCTGTTGGCTGCAACTGCTGAACACAACTTGTTTCATCCTTCACAACACTACTCTGCTTGGACAGTGGAACCTCCAACAGATTCTCTTAAACACATTCTCCAACATTGTACTGGATGCCAAAACATTCCAAGACCAACTGATCTTCCCTTGGTATCTTAG 1134 45.33 MGNAHGHRKHFNHGVNTSPPTNNAPSPFNKYSSSEPTSRNSTSTSKMESLPYAHVDSSLRALAAQAEGFGRSAIGGLHGSVYCVTNLADDGPGSLRFGCRKKEPLWIIFEVSGTIHLSTYLSVSSYKTVDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRGSTDITISRCHFSQHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTHQRHPRVRYAQVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGAKKVAFKYLTEKAADKEEPSSGCIWSDGDLFVNGTQSGLLAATAEHNLFHPSQHYSAWTVEPPTDSLKHILQHCTGCQNIPRPTDLPLVS 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28137859 28141087 - CrPI670011_04g009480.1 Cre04g0948 495252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0948 377 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Cre04g0948 377 PRINTS Pollen allergen Amb family signature 65 82 IPR018082 -
Cre04g0948 377 PRINTS Pollen allergen Amb family signature 267 286 IPR018082 -
Cre04g0948 377 SMART amb_all 77 290 IPR002022 -
Cre04g0948 377 Pfam Pectate lyase 121 283 IPR002022 -
Cre04g0948 377 MobiDBLite consensus disorder prediction 1 49 - -
Cre04g0948 377 Gene3D - 51 358 IPR012334 -
Cre04g0948 377 ProSiteProfiles Zinc finger integrase-type profile. 324 365 IPR003308 GO:0008270(InterPro)
Cre04g0948 377 PANTHER PECTATE LYASE 18-RELATED 58 349 IPR045032 GO:0030570(InterPro)
Cre04g0948 377 MobiDBLite consensus disorder prediction 14 49 - -
Cre04g0948 377 SUPERFAMILY Pectin lyase-like 65 372 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0948 Cre-Chr4:28137859 Cre08g0734 Cre-Chr8:20400979 1.60E-40 dispersed
Cre04g0948 Cre-Chr4:28137859 Cre05g2309 Cre-Chr5:34642720 1.70E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0948 K01728 - csv:101219724 708.753