Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0965 ATGAGTGCTCATGCCGGCAGGCAGAGAGAGTTAAGAGAAACAAGTCACCACGCACAGGATGGTAATGGAAGCGTGAACAATGGTGTATCTGGCAGGGAACAGAGCCCGGTTGAGGAAAATGAGTTGAAGGTCAATGGATTAACTAGAAATACGGAGGATGGTCGAAAAAACACTGTTCATGCCCAGGAAATTCTGCAAATACAACAGCAGCAGCAGCCTCAAGGATCTATGGTCTGCTGGGAGAGATTCCTACATCTTAGGTCCCTCAAGGTTTTGCTTGTCGAAAATGATGACTCCACTCGGCATCTAGTCACTGCACTGCTTCGTAATTGCAGTTATGAAGTTATCGCGGCTGCAAATGGACTACACGCATGGAAGATGCTAGAAGATCTGACAAATCACATAGATCTTGTCCTAACAGAGGTGGTCATGCCTTGTTTATCTGGCATTGGTCTTTTATGCAAGATTATGAACCATAAAACGAGGAAGAATATACCTGTAATCATGATGTCTTCTCATGATTCAATGGGTTTAGTCTTTAAATGTTTGTCAAAGGGTGCTGTTGATTTTTTAGTGAAGCCCATTCGGAAGAATGAACTTAAAAACCTTTGGCAACATGTTTGGAGAAGATGCCATAGTTCTAGCGGCAGTGGAAGTGAGAGTGGCACACAGACCCAAAAATCTGTGAAGTCAAAAAGTGTTGAAAAATCAGACAACAACACCGGGAGCAACGATGAAGAAGAAGACAATGAGAGCATTGGTTTCAACATTGGTGATGGAAGTGATGATGGCAGTGGCACACAGAGTTCTTGGACCAAGCAAGCTATAGAAGTTGAAAGCCCTCGACCAGTATCTGCATCAGCATGGGATCAAAAACGTGAACGTCCTGATAGTACTTGTGCTCAAGTTGTCCACTCAAATGCTGATGCATTTGCCAATAATGCTCCAATTCTTTTGACAGCAGGGTGCCAGGTGCAGAAAAAGCAACTTGAAACTGTTACCTTTGGTAAAGTTGAACTAGGCATGCACAGGAATCTTGATTTACAACTTGAACTCTCTACGGAACATCCAACCAAGCTAGTTAACAGAAAACAGAACATTAGGGTTGAGATCGGGTCCAGTGGATTCAACGAGCAGTTCAACAAAGGACATCTTGACCTCAACTCTGAGAGCCCATCCAGCAAACTGAAGTATGAGGAAACAACTGTTACTGGTCTTGCCACCAATCTTTCTGATTGTAAGATGGATGTTGCTGTGTTTGAGGCGCCAAGCAGCCATCCGAAGACCACAGACATTAAGAATAAAGATGTTACAGATTCAGAGGATTTTCCATCCCTTGAGCTTGGATTAAAAAGGCTTAGAGGAGTTCAAACGACAGGGAAAGCGGTACAAGATGAGCGGAATGTTTTGAGACGCTCAGATTCTTCAGCTTTTTCTAGGTACAATGCTGGCTCAAATTCTAACAAGACTCCAACGGGAAATGCCGGAAGTAACTCTCCACCTGTTAATGGCTTAGAAGTTACAAATCAAGAGAACATGCAAGATATTCGATCTCATTCAAGTGGTAACCCTCCCAATCAATGCTCAAATGGAGATAGCAATAATATTGACATGGGGTCCACTACTAATAATGCATTTTCCAAGTCCGTAGTTACTAATAACAAGTCAGCAATGGCATCAACGGTCAACTGTTTGTACCCATCGGGAGCTTTCCAACCTGTTAAGAATGACAGTCAATCTGTTCCACAGCAAGCTGATAATGTCAATAATGTCACAACTACAACAATGCAAGCTAAGTCTAATTTTGTGCACAGGGAATCTCAAATGCAGCAACTTTGTCACCCGTATGATCCCACTCATCAGCTTGTCCACAATATTCAACGATTGTCATCTGAGCATAATGATTTTTCATTAAAGAAAATATCTGCAGCTCCCACGCATTGTGGGTCAACCAATGTTTTAAATGGTACTTTAGAAGGTAATGCAGCAAACTATAGTGTGAACGGTAGCGCCTCGGGCAGTAACCATGGAAGCAATGGCCAAAATGGGAGTAGCACTGCAGTAAATGCTGGAGGGCTGAATATGGAAAGTGATAATGGAATAGGTCGAAGTGGGGATGCCAGTGGAAGTGGGAGTGGGAGTGGGAGTGGGAGTGGAAACAAAATGGACCAGAACAAAGTTTCACAAAGGGAAGCTGCCTTGACAAAGTTTCGCCAGAAAAGGAAGGAAAGATGCTTTCGTAAAAAGGTCCGATACCAAAGCAGAAAGAGATTAGCAGAACAGAGACCCCGTGTCAGGGGACAGTTTGTGAGACAAAACACGAGCGAAAACACGAGCAATGCAGGAGATGGCTAA 2355 43.4 MSAHAGRQRELRETSHHAQDGNGSVNNGVSGREQSPVEENELKVNGLTRNTEDGRKNTVHAQEILQIQQQQQPQGSMVCWERFLHLRSLKVLLVENDDSTRHLVTALLRNCSYEVIAAANGLHAWKMLEDLTNHIDLVLTEVVMPCLSGIGLLCKIMNHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSVEKSDNNTGSNDEEEDNESIGFNIGDGSDDGSGTQSSWTKQAIEVESPRPVSASAWDQKRERPDSTCAQVVHSNADAFANNAPILLTAGCQVQKKQLETVTFGKVELGMHRNLDLQLELSTEHPTKLVNRKQNIRVEIGSSGFNEQFNKGHLDLNSESPSSKLKYEETTVTGLATNLSDCKMDVAVFEAPSSHPKTTDIKNKDVTDSEDFPSLELGLKRLRGVQTTGKAVQDERNVLRRSDSSAFSRYNAGSNSNKTPTGNAGSNSPPVNGLEVTNQENMQDIRSHSSGNPPNQCSNGDSNNIDMGSTTNNAFSKSVVTNNKSAMASTVNCLYPSGAFQPVKNDSQSVPQQADNVNNVTTTTMQAKSNFVHRESQMQQLCHPYDPTHQLVHNIQRLSSEHNDFSLKKISAAPTHCGSTNVLNGTLEGNAANYSVNGSASGSNHGSNGQNGSSTAVNAGGLNMESDNGIGRSGDASGSGSGSGSGSGNKMDQNKVSQREAALTKFRQKRKERCFRKKVRYQSRKRLAEQRPRVRGQFVRQNTSENTSNAGDG 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28270709 28277892 - CrPI670011_04g009650.1 Cre04g0965 495269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0965 784 ProSiteProfiles CCT domain profile. 730 772 IPR010402 GO:0005515(InterPro)
Cre04g0965 784 MobiDBLite consensus disorder prediction 213 230 - -
Cre04g0965 784 FunFam Two-component response regulator-like PRR37 89 247 - -
Cre04g0965 784 MobiDBLite consensus disorder prediction 459 541 - -
Cre04g0965 784 CDD psREC_PRR 91 194 - -
Cre04g0965 784 MobiDBLite consensus disorder prediction 18 34 - -
Cre04g0965 784 MobiDBLite consensus disorder prediction 767 784 - -
Cre04g0965 784 MobiDBLite consensus disorder prediction 740 755 - -
Cre04g0965 784 MobiDBLite consensus disorder prediction 669 784 - -
Cre04g0965 784 MobiDBLite consensus disorder prediction 474 541 - -
Cre04g0965 784 Pfam Response regulator receiver domain 91 202 IPR001789 GO:0000160(InterPro)
Cre04g0965 784 MobiDBLite consensus disorder prediction 213 295 - -
Cre04g0965 784 SUPERFAMILY CheY-like 87 213 IPR011006 -
Cre04g0965 784 Gene3D - 88 336 - -
Cre04g0965 784 MobiDBLite consensus disorder prediction 1 17 - -
Cre04g0965 784 MobiDBLite consensus disorder prediction 701 732 - -
Cre04g0965 784 Pfam CCT motif 730 772 IPR010402 GO:0005515(InterPro)
Cre04g0965 784 SMART REC_2 89 204 IPR001789 GO:0000160(InterPro)
Cre04g0965 784 ProSiteProfiles Response regulatory domain profile. 90 208 IPR001789 GO:0000160(InterPro)
Cre04g0965 784 MobiDBLite consensus disorder prediction 261 276 - -
Cre04g0965 784 MobiDBLite consensus disorder prediction 1 55 - -
Cre04g0965 784 PANTHER TWO-COMPONENT RESPONSE REGULATOR 75 356 IPR045279 GO:0009736(InterPro)
Cre04g0965 784 MobiDBLite consensus disorder prediction 669 693 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0965 Cre-Chr4:28270709 Cre09g2496 Cre-Chr9:44218898 1.90E-43 dispersed
Cre04g0965 Cre-Chr4:28270709 Cre01g1541 Cre-Chr1:28617391 2.20E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53427 PF00072 Response_reg 1.60E-20 CL0304 Cre TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0965 K12129 - csv:101210765 1370.14