Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g0965 | ATGAGTGCTCATGCCGGCAGGCAGAGAGAGTTAAGAGAAACAAGTCACCACGCACAGGATGGTAATGGAAGCGTGAACAATGGTGTATCTGGCAGGGAACAGAGCCCGGTTGAGGAAAATGAGTTGAAGGTCAATGGATTAACTAGAAATACGGAGGATGGTCGAAAAAACACTGTTCATGCCCAGGAAATTCTGCAAATACAACAGCAGCAGCAGCCTCAAGGATCTATGGTCTGCTGGGAGAGATTCCTACATCTTAGGTCCCTCAAGGTTTTGCTTGTCGAAAATGATGACTCCACTCGGCATCTAGTCACTGCACTGCTTCGTAATTGCAGTTATGAAGTTATCGCGGCTGCAAATGGACTACACGCATGGAAGATGCTAGAAGATCTGACAAATCACATAGATCTTGTCCTAACAGAGGTGGTCATGCCTTGTTTATCTGGCATTGGTCTTTTATGCAAGATTATGAACCATAAAACGAGGAAGAATATACCTGTAATCATGATGTCTTCTCATGATTCAATGGGTTTAGTCTTTAAATGTTTGTCAAAGGGTGCTGTTGATTTTTTAGTGAAGCCCATTCGGAAGAATGAACTTAAAAACCTTTGGCAACATGTTTGGAGAAGATGCCATAGTTCTAGCGGCAGTGGAAGTGAGAGTGGCACACAGACCCAAAAATCTGTGAAGTCAAAAAGTGTTGAAAAATCAGACAACAACACCGGGAGCAACGATGAAGAAGAAGACAATGAGAGCATTGGTTTCAACATTGGTGATGGAAGTGATGATGGCAGTGGCACACAGAGTTCTTGGACCAAGCAAGCTATAGAAGTTGAAAGCCCTCGACCAGTATCTGCATCAGCATGGGATCAAAAACGTGAACGTCCTGATAGTACTTGTGCTCAAGTTGTCCACTCAAATGCTGATGCATTTGCCAATAATGCTCCAATTCTTTTGACAGCAGGGTGCCAGGTGCAGAAAAAGCAACTTGAAACTGTTACCTTTGGTAAAGTTGAACTAGGCATGCACAGGAATCTTGATTTACAACTTGAACTCTCTACGGAACATCCAACCAAGCTAGTTAACAGAAAACAGAACATTAGGGTTGAGATCGGGTCCAGTGGATTCAACGAGCAGTTCAACAAAGGACATCTTGACCTCAACTCTGAGAGCCCATCCAGCAAACTGAAGTATGAGGAAACAACTGTTACTGGTCTTGCCACCAATCTTTCTGATTGTAAGATGGATGTTGCTGTGTTTGAGGCGCCAAGCAGCCATCCGAAGACCACAGACATTAAGAATAAAGATGTTACAGATTCAGAGGATTTTCCATCCCTTGAGCTTGGATTAAAAAGGCTTAGAGGAGTTCAAACGACAGGGAAAGCGGTACAAGATGAGCGGAATGTTTTGAGACGCTCAGATTCTTCAGCTTTTTCTAGGTACAATGCTGGCTCAAATTCTAACAAGACTCCAACGGGAAATGCCGGAAGTAACTCTCCACCTGTTAATGGCTTAGAAGTTACAAATCAAGAGAACATGCAAGATATTCGATCTCATTCAAGTGGTAACCCTCCCAATCAATGCTCAAATGGAGATAGCAATAATATTGACATGGGGTCCACTACTAATAATGCATTTTCCAAGTCCGTAGTTACTAATAACAAGTCAGCAATGGCATCAACGGTCAACTGTTTGTACCCATCGGGAGCTTTCCAACCTGTTAAGAATGACAGTCAATCTGTTCCACAGCAAGCTGATAATGTCAATAATGTCACAACTACAACAATGCAAGCTAAGTCTAATTTTGTGCACAGGGAATCTCAAATGCAGCAACTTTGTCACCCGTATGATCCCACTCATCAGCTTGTCCACAATATTCAACGATTGTCATCTGAGCATAATGATTTTTCATTAAAGAAAATATCTGCAGCTCCCACGCATTGTGGGTCAACCAATGTTTTAAATGGTACTTTAGAAGGTAATGCAGCAAACTATAGTGTGAACGGTAGCGCCTCGGGCAGTAACCATGGAAGCAATGGCCAAAATGGGAGTAGCACTGCAGTAAATGCTGGAGGGCTGAATATGGAAAGTGATAATGGAATAGGTCGAAGTGGGGATGCCAGTGGAAGTGGGAGTGGGAGTGGGAGTGGGAGTGGAAACAAAATGGACCAGAACAAAGTTTCACAAAGGGAAGCTGCCTTGACAAAGTTTCGCCAGAAAAGGAAGGAAAGATGCTTTCGTAAAAAGGTCCGATACCAAAGCAGAAAGAGATTAGCAGAACAGAGACCCCGTGTCAGGGGACAGTTTGTGAGACAAAACACGAGCGAAAACACGAGCAATGCAGGAGATGGCTAA | 2355 | 43.4 | MSAHAGRQRELRETSHHAQDGNGSVNNGVSGREQSPVEENELKVNGLTRNTEDGRKNTVHAQEILQIQQQQQPQGSMVCWERFLHLRSLKVLLVENDDSTRHLVTALLRNCSYEVIAAANGLHAWKMLEDLTNHIDLVLTEVVMPCLSGIGLLCKIMNHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSVEKSDNNTGSNDEEEDNESIGFNIGDGSDDGSGTQSSWTKQAIEVESPRPVSASAWDQKRERPDSTCAQVVHSNADAFANNAPILLTAGCQVQKKQLETVTFGKVELGMHRNLDLQLELSTEHPTKLVNRKQNIRVEIGSSGFNEQFNKGHLDLNSESPSSKLKYEETTVTGLATNLSDCKMDVAVFEAPSSHPKTTDIKNKDVTDSEDFPSLELGLKRLRGVQTTGKAVQDERNVLRRSDSSAFSRYNAGSNSNKTPTGNAGSNSPPVNGLEVTNQENMQDIRSHSSGNPPNQCSNGDSNNIDMGSTTNNAFSKSVVTNNKSAMASTVNCLYPSGAFQPVKNDSQSVPQQADNVNNVTTTTMQAKSNFVHRESQMQQLCHPYDPTHQLVHNIQRLSSEHNDFSLKKISAAPTHCGSTNVLNGTLEGNAANYSVNGSASGSNHGSNGQNGSSTAVNAGGLNMESDNGIGRSGDASGSGSGSGSGSGNKMDQNKVSQREAALTKFRQKRKERCFRKKVRYQSRKRLAEQRPRVRGQFVRQNTSENTSNAGDG | 784 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 28270709 | 28277892 | - | CrPI670011_04g009650.1 | Cre04g0965 | 495269 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g0965 | 784 | ProSiteProfiles | CCT domain profile. | 730 | 772 | IPR010402 | GO:0005515(InterPro) | |
Cre04g0965 | 784 | MobiDBLite | consensus disorder prediction | 213 | 230 | - | - | |
Cre04g0965 | 784 | FunFam | Two-component response regulator-like PRR37 | 89 | 247 | - | - | |
Cre04g0965 | 784 | MobiDBLite | consensus disorder prediction | 459 | 541 | - | - | |
Cre04g0965 | 784 | CDD | psREC_PRR | 91 | 194 | - | - | |
Cre04g0965 | 784 | MobiDBLite | consensus disorder prediction | 18 | 34 | - | - | |
Cre04g0965 | 784 | MobiDBLite | consensus disorder prediction | 767 | 784 | - | - | |
Cre04g0965 | 784 | MobiDBLite | consensus disorder prediction | 740 | 755 | - | - | |
Cre04g0965 | 784 | MobiDBLite | consensus disorder prediction | 669 | 784 | - | - | |
Cre04g0965 | 784 | MobiDBLite | consensus disorder prediction | 474 | 541 | - | - | |
Cre04g0965 | 784 | Pfam | Response regulator receiver domain | 91 | 202 | IPR001789 | GO:0000160(InterPro) | |
Cre04g0965 | 784 | MobiDBLite | consensus disorder prediction | 213 | 295 | - | - | |
Cre04g0965 | 784 | SUPERFAMILY | CheY-like | 87 | 213 | IPR011006 | - | |
Cre04g0965 | 784 | Gene3D | - | 88 | 336 | - | - | |
Cre04g0965 | 784 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cre04g0965 | 784 | MobiDBLite | consensus disorder prediction | 701 | 732 | - | - | |
Cre04g0965 | 784 | Pfam | CCT motif | 730 | 772 | IPR010402 | GO:0005515(InterPro) | |
Cre04g0965 | 784 | SMART | REC_2 | 89 | 204 | IPR001789 | GO:0000160(InterPro) | |
Cre04g0965 | 784 | ProSiteProfiles | Response regulatory domain profile. | 90 | 208 | IPR001789 | GO:0000160(InterPro) | |
Cre04g0965 | 784 | MobiDBLite | consensus disorder prediction | 261 | 276 | - | - | |
Cre04g0965 | 784 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Cre04g0965 | 784 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 75 | 356 | IPR045279 | GO:0009736(InterPro) | |
Cre04g0965 | 784 | MobiDBLite | consensus disorder prediction | 669 | 693 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g0965 | Cre-Chr4:28270709 | Cre09g2496 | Cre-Chr9:44218898 | 1.90E-43 | dispersed | |
Cre04g0965 | Cre-Chr4:28270709 | Cre01g1541 | Cre-Chr1:28617391 | 2.20E-12 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53427 | PF00072 | Response_reg | 1.60E-20 | CL0304 | Cre | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g0965 | K12129 | - | csv:101210765 | 1370.14 |