Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0972 ATGTTGGACCTCAATCTCTGTATTCTTTCCGGAGATTCCTCTTCCGGTGGAACTGGTTTAAATCCCTTCAATCTTTCCGCTCCCGGAGTTCAGAGTCCCATTTCATCCTCCGTCGTCAACGCCGATCAGTCCAACGTTATTGGCGATGACGGCTCCTCTTCCAACGCTGATTGTGGGTTCACTTTCTCTTTCAGCATCCTCAACAACAGCAACGACGATCAACGCGGCCGGACTGTCGCCGGCAGGTTTTCCTCCGACGTCTATTCACAGAGGAAATGGATGGTTCAACAGTCCGTTCATCCGGCGAAAAAGGGCCGGCGAGGCCCGAAATCAAGAAGCTCCGAGTATCGTGGGGTTACGTATTATCGAAGAACAGGGAGATGGGAATCGCATATCTGGGATAGCGGGAAACAAGTCTATTTGGGTGGTTTTGATACTGCCCATTCTGCAGCCAGGGCTTATGATCGAGCTGCAATAAAGTTTCGAGGGGTTCATGCTGATATAAATTTCAATATCAGTGACTACAGTGAAGAGATTAAACAGATGAGTAATTTTAGTAAAGAGGAGTTTGTTCATATTCTTCGAAGGCAGAGCACTGGATTTTCAAGAGGGAGTTCTAAATACAGAGGGGTTACTCTTCACAAGTGTGGGAGATGGGAGGCTCGAATGGGACAGTTCTTGGGGAAGAAGTATGTGTATCTTGGGCTGTTTGATAGTGAGATAGAGGCTGCAAGAGCATATGATAAGGCTGCCATAAAATATAATGGAAGGGAAGCTGTTACCAATTTTGATCAGAGTTCCTATGAGATGGAGATTGCTTTTAAATCTCAAAACCAAGACATGGGTGATATTGACTTGAACTTGGGCATTGCCCCTCCTTGTCCATCTGAAGACCAAAAGGACAACCTGAATGTCTGTGCTCCAAATTTCTGTAGCTTAAATAAATCAGATTCTGAGAGATCTGAGTTGATAATGCTTGAAAACCATTCTTCTGTGGCTGTGAGAGCACATCCTTCTTTTATGAGTTGTCCCAATTTCTTTCCTACCTACCAGGGAAGAGCAATGGAGAAGATAATGGAAGTTGAAACTTTACCGAACTGGGGGTGGCGCCAGATCCCAATCTCCTACGGCGGAGCAGCTTCCGTCCCTTTCTTCTCCACTGCAGCATCATCAGGATTCCCTTCTTCTCCGGCTGCCCAGCTTCCTCCCCCCTCTCCTCCCCATCTCCTTCGTCCATCGCCGCCGTTCCTCCGCTACCATTTTCCCCCCACTAACAGCGTTCCTCATTTCTACTGCAGCACCTGA 1305 47.36 MLDLNLCILSGDSSSGGTGLNPFNLSAPGVQSPISSSVVNADQSNVIGDDGSSSNADCGFTFSFSILNNSNDDQRGRTVAGRFSSDVYSQRKWMVQQSVHPAKKGRRGPKSRSSEYRGVTYYRRTGRWESHIWDSGKQVYLGGFDTAHSAARAYDRAAIKFRGVHADINFNISDYSEEIKQMSNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKYNGREAVTNFDQSSYEMEIAFKSQNQDMGDIDLNLGIAPPCPSEDQKDNLNVCAPNFCSLNKSDSERSELIMLENHSSVAVRAHPSFMSCPNFFPTYQGRAMEKIMEVETLPNWGWRQIPISYGGAASVPFFSTAASSGFPSSPAAQLPPPSPPHLLRPSPPFLRYHFPPTNSVPHFYCST 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28342347 28346935 + CrPI670011_04g009720.1 Cre04g0972 495276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0972 434 PRINTS Ethylene responsive element binding protein signature 208 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g0972 434 PRINTS Ethylene responsive element binding protein signature 246 266 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g0972 434 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 73 298 - -
Cre04g0972 434 ProSiteProfiles AP2/ERF domain profile. 207 264 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g0972 434 CDD AP2 206 266 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g0972 434 Gene3D AP2/ERF domain 206 265 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g0972 434 Gene3D AP2/ERF domain 115 173 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g0972 434 Pfam AP2 domain 206 256 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g0972 434 Pfam AP2 domain 115 163 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g0972 434 SUPERFAMILY DNA-binding domain 206 265 IPR016177 GO:0003677(InterPro)
Cre04g0972 434 ProSiteProfiles AP2/ERF domain profile. 115 171 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g0972 434 FunFam AP2-like ethylene-responsive transcription factor 114 173 - -
Cre04g0972 434 SUPERFAMILY DNA-binding domain 114 173 IPR016177 GO:0003677(InterPro)
Cre04g0972 434 FunFam AP2-like ethylene-responsive transcription factor 206 266 - -
Cre04g0972 434 SMART rav1_2 207 270 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g0972 434 SMART rav1_2 115 177 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g0972 434 CDD AP2 114 173 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0972 Cre-Chr4:28342347 Cre04g1320 Cre-Chr4:32003930 3.20E-85 dispersed
Cre10g2174 Cre-Chr10:36291159 Cre04g0972 Cre-Chr4:28342347 3.70E-104 wgd
Cre02g2381 Cre-Chr2:37234669 Cre04g0972 Cre-Chr4:28342347 8.30E-98 wgd
Cre02g1701 Cre-Chr2:30101729 Cre04g0972 Cre-Chr4:28342347 6.40E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53428 PF00847 AP2 1.40E-10 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0972 K09284 - csv:101211008 686.797