Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0982 ATGATGGCTGGTATTGAATTTTCTGTTTCTTCTAATTCTAATGGAGAATTTGCTGATCATCAACAACAAAATTCTCAACTTTATCATCATCTTCCTCATAACCCTAACCCTAACCCTAATCCAAATCTTGATTCTTCTTTTCCTCCTCCTACTCTCCCCAAGAAGAAGAGAAACTTGCCAGGAAAACCAGATCCAGATGCTGAGGTAATTGCTTTATCTCCCAACACTTTAATGGCTACAAACAGATTCATATGTGAAATATGCAATAAAGGGTTTCAAAGGGACCAAAATTTGCAACTTCATAGAAGAGGGCATAATTTGCCATGGAAGCTAAGGCAAAGAAGCAATAAAGAAGTAGTGAAGAAGAAAGTATATATTTGCCCTGAAAAATGTTGTGTTCATCATGATCCAAGCAGAGCCCTTGGGGACCTAACTGGAATTAAAAAACATTTCAGTAGAAAACATGGGGAGAAAAAATGGAAGTGTGAGAAATGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAGACTTGTGGTACTAGAGAATACAAATGTGACTGTGGAACACTATTTTCCAGGAAAGACAGCTTCATAACTCACAGGGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAAGCTAATATCATCTGTTACAGCAGCAAATTCAAGACTTAATTTCATTGCCAGTAATAATAATAATTCAATCAACCAATCTCTTTTCAATTCCCAATTACAAGACCATAATTTTGAATCATCACCTGCTTTCCCCCAATTTCTTCCACCCTATAATAATCTCTACCAAATCTCAAACCAAATTTTGAGTTTGAATAACAAAAACAATGCTTCAGAAACAGCCACCATGAACCTCACTCTGTCCTCCTCTGCCAACAAACAACAACAAGCTTATAACTTGCCATCGTTTTGCTCCGGTGGCGGTGGCGGAGGGATGTCGGCGACGGCACTGCTGCTGAAAGCGGCGCAATTGGGGTCGACAAAGAGTAAAGATAACTCATTTTCTTCAGGGAGTAACAGTGTGGGAGTAGTTATGAGTTCATCTCCAAATAATATTTCATTTGAGAGTGGTAATTGTAATTATTATGGGGGAAAGGGAGATGGGTTGAGGGATTTTTTTGGGAGGAAGGAGGGAGAAGGGAATGATCATCAGTTGATTATTCCATTAATGGAGATGACCAAATTTGCTAACTCTATGAGCTCCGAGATGGGTTTGAGCCAATTCATTGGCAATGATAATCCGGGATAA 1275 38.82 MMAGIEFSVSSNSNGEFADHQQQNSQLYHHLPHNPNPNPNPNLDSSFPPPTLPKKKRNLPGKPDPDAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVVKKKVYICPEKCCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESAKLISSVTAANSRLNFIASNNNNSINQSLFNSQLQDHNFESSPAFPQFLPPYNNLYQISNQILSLNNKNNASETATMNLTLSSSANKQQQAYNLPSFCSGGGGGGMSATALLLKAAQLGSTKSKDNSFSSGSNSVGVVMSSSPNNISFESGNCNYYGGKGDGLRDFFGRKEGEGNDHQLIIPLMEMTKFANSMSSEMGLSQFIGNDNPG 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28428145 28431662 + CrPI670011_04g009820.1 Cre04g0982 495286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0982 424 FunFam protein indeterminate-domain 5, chloroplastic-like 138 217 - -
Cre04g0982 424 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 34 348 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre04g0982 424 MobiDBLite consensus disorder prediction 1 68 - -
Cre04g0982 424 MobiDBLite consensus disorder prediction 1 33 - -
Cre04g0982 424 FunFam protein indeterminate-domain 12-like 62 131 - -
Cre04g0982 424 SUPERFAMILY beta-beta-alpha zinc fingers 82 180 IPR036236 -
Cre04g0982 424 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 121 155 - -
Cre04g0982 424 Gene3D Classic Zinc Finger 139 217 - -
Cre04g0982 424 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 159 183 - -
Cre04g0982 424 Gene3D Classic Zinc Finger 63 136 - -
Cre04g0982 424 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 186 224 - -
Cre04g0982 424 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 105 IPR013087 -
Cre04g0982 424 MobiDBLite consensus disorder prediction 34 56 - -
Cre04g0982 424 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Cre04g0982 424 SMART c2h2final6 160 180 IPR013087 -
Cre04g0982 424 SMART c2h2final6 83 105 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1304 Cre-Chr2:15680288 Cre04g0982 Cre-Chr4:28428145 5.30E-88 dispersed
Cre04g0982 Cre-Chr4:28428145 Cre09g0064 Cre-Chr9:901632 4.30E-87 dispersed
Cre03g1971 Cre-Chr3:36732042 Cre04g0982 Cre-Chr4:28428145 3.80E-86 transposed
Cre10g2152 Cre-Chr10:36064706 Cre04g0982 Cre-Chr4:28428145 5.80E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53430 PF12171 zf-C2H2_jaz 6.00E-05 CL0361 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0982 K25870 - csv:101221389 578.556