Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g0986 | ATGAAGTTTCGTGGTCTTCTTTCTAATTGTTGTTACTCTCCATCGCCGACTGCCATGGAAAATAGCCGCCACGATAGACAAGACAATGAGAGTTTTCGTGTGTACTCTTATAACGAGCTTAAATCGGCCACCAATGGATTTAGTGGAGCGAATAAGGTTGGAGAGGGTGGATTCGGCATTGTTTACAAGGGTCGGCTTCGAGATGGCAGGAAGATTGCTGTGAAGGTGCTTTCTATTGAGGTAGAATCCATGAGAGGAGAAAGGGAGTTCATAGCTGAGTTAACTTCACTTTCTAACATTAGACATGAAAATCTGGTTGAGCTTAAAGGGTGTTATGTTGATGGAAGTAACAGATACTTGGTCTATGATTACATGGAAAACAACAGCCTTGCACATGCTCTTCAGGGTGTGAGGGAAAATAGAATGAGACTTAGTTGGCTAGCCAGAAAGGAAATTTTAATTGGAGTTGCTCGTGGGCTTGCCTATCTTCATGAGGAGGTTGAGCCGCATATAGTTCATAGAGATATAAAATCCAGCAATATACTACTCGACCATAATTTTACACCTAAAGTTGCGGATTTTGGATTGGCTAAGTTGTTGAGAGAGAACCATTCTCATGTTAGTACTCGTGTTGCTGGCACAATAGGATATCTTGCTCCAGAATATGCTGTGAGCGGCCATTTGACGCGAAAATCGGATGTCTATAGCTTCGGAGTGTTGTTGTTGGAGATTGTCAGTGGAAGAGCAACTGTTGATTTTGATTTGGAACATGGTGAGCACCATTTGGTTCAAAAGGTATGGGAACATTACAAGGCGAACGAGCTAGTAAAATTGATAGATCCCATGCTTGACATAGACTTCTGCGAAGAAGAAGCTGTTCGGTTTATGAAGATTGGTCTACTCTGTGTGCAAGAAAACACAACGAAACGACCACGAATGTCTCTTGCTTTAAGCATGTTGATGAAAGAGACTGACGTTAATGATCATAATATTTCACAACCTGGACATATTATTGACTTCATGGACATTAAAATGGGTAAAGGAAACTCGTCAACCAGCATTTTCTCCAAGGTTTCCACAGGAAATAGCTTATTAAGTCCTACAAAGGTAAGAGATGAATCAGATGATGTACTTACTTGGAAAAGAAAACTGAGGCAAGGCAATGTTCTTAAGCTTAATGTGGTTTCTTTGCGTATGCAAATTTATATATGCATGGCTCCTTGCATGCCATTTAAGAAGGCCACCTATTCTCGGATGATGGGCTTTGCAAATGGCATACAGGGAGCCAGGCATACAATGCTACATACTTTTGCAATTGAGCCAAAAGAAGAAAGAAAGAGTGAAAAATGA | 1350 | 40.89 | MKFRGLLSNCCYSPSPTAMENSRHDRQDNESFRVYSYNELKSATNGFSGANKVGEGGFGIVYKGRLRDGRKIAVKVLSIEVESMRGEREFIAELTSLSNIRHENLVELKGCYVDGSNRYLVYDYMENNSLAHALQGVRENRMRLSWLARKEILIGVARGLAYLHEEVEPHIVHRDIKSSNILLDHNFTPKVADFGLAKLLRENHSHVSTRVAGTIGYLAPEYAVSGHLTRKSDVYSFGVLLLEIVSGRATVDFDLEHGEHHLVQKVWEHYKANELVKLIDPMLDIDFCEEEAVRFMKIGLLCVQENTTKRPRMSLALSMLMKETDVNDHNISQPGHIIDFMDIKMGKGNSSTSIFSKVSTGNSLLSPTKVRDESDDVLTWKRKLRQGNVLKLNVVSLRMQIYICMAPCMPFKKATYSRMMGFANGIQGARHTMLHTFAIEPKEERKSEK | 449 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 28454958 | 28457208 | + | CrPI670011_04g009860.1 | Cre04g0986 | 495290 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g0986 | 449 | SMART | serkin_6 | 47 | 296 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre04g0986 | 449 | CDD | STKc_IRAK | 53 | 322 | - | - | |
Cre04g0986 | 449 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 171 | 183 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre04g0986 | 449 | ProSitePatterns | Protein kinases ATP-binding region signature. | 53 | 75 | IPR017441 | GO:0005524(InterPro) | |
Cre04g0986 | 449 | PANTHER | CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 | 25 | 356 | IPR052059 | GO:0004674(PANTHER)|GO:0006468(PANTHER) | |
Cre04g0986 | 449 | Gene3D | Phosphorylase Kinase; domain 1 | 17 | 124 | - | - | |
Cre04g0986 | 449 | ProSiteProfiles | Protein kinase domain profile. | 47 | 332 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre04g0986 | 449 | FunFam | Serine/threonine-protein kinase receptor | 17 | 124 | - | - | |
Cre04g0986 | 449 | Gene3D | Transferase(Phosphotransferase) domain 1 | 125 | 335 | - | - | |
Cre04g0986 | 449 | SUPERFAMILY | Protein kinase-like (PK-like) | 28 | 320 | IPR011009 | - | |
Cre04g0986 | 449 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 125 | 332 | - | - | |
Cre04g0986 | 449 | Pfam | Protein kinase domain | 51 | 317 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g0986 | Cre-Chr4:28454958 | Cre07g1434 | Cre-Chr7:29393672 | 4.30E-101 | dispersed | |
Cre04g0986 | Cre-Chr4:28454958 | Cre05g0950 | Cre-Chr5:8750622 | 1.50E-66 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64042 | PF00069 | Pkinase | 1.30E-49 | CL0016 | Cre | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g0986 | - | - | - | 0.0 |