Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0986 ATGAAGTTTCGTGGTCTTCTTTCTAATTGTTGTTACTCTCCATCGCCGACTGCCATGGAAAATAGCCGCCACGATAGACAAGACAATGAGAGTTTTCGTGTGTACTCTTATAACGAGCTTAAATCGGCCACCAATGGATTTAGTGGAGCGAATAAGGTTGGAGAGGGTGGATTCGGCATTGTTTACAAGGGTCGGCTTCGAGATGGCAGGAAGATTGCTGTGAAGGTGCTTTCTATTGAGGTAGAATCCATGAGAGGAGAAAGGGAGTTCATAGCTGAGTTAACTTCACTTTCTAACATTAGACATGAAAATCTGGTTGAGCTTAAAGGGTGTTATGTTGATGGAAGTAACAGATACTTGGTCTATGATTACATGGAAAACAACAGCCTTGCACATGCTCTTCAGGGTGTGAGGGAAAATAGAATGAGACTTAGTTGGCTAGCCAGAAAGGAAATTTTAATTGGAGTTGCTCGTGGGCTTGCCTATCTTCATGAGGAGGTTGAGCCGCATATAGTTCATAGAGATATAAAATCCAGCAATATACTACTCGACCATAATTTTACACCTAAAGTTGCGGATTTTGGATTGGCTAAGTTGTTGAGAGAGAACCATTCTCATGTTAGTACTCGTGTTGCTGGCACAATAGGATATCTTGCTCCAGAATATGCTGTGAGCGGCCATTTGACGCGAAAATCGGATGTCTATAGCTTCGGAGTGTTGTTGTTGGAGATTGTCAGTGGAAGAGCAACTGTTGATTTTGATTTGGAACATGGTGAGCACCATTTGGTTCAAAAGGTATGGGAACATTACAAGGCGAACGAGCTAGTAAAATTGATAGATCCCATGCTTGACATAGACTTCTGCGAAGAAGAAGCTGTTCGGTTTATGAAGATTGGTCTACTCTGTGTGCAAGAAAACACAACGAAACGACCACGAATGTCTCTTGCTTTAAGCATGTTGATGAAAGAGACTGACGTTAATGATCATAATATTTCACAACCTGGACATATTATTGACTTCATGGACATTAAAATGGGTAAAGGAAACTCGTCAACCAGCATTTTCTCCAAGGTTTCCACAGGAAATAGCTTATTAAGTCCTACAAAGGTAAGAGATGAATCAGATGATGTACTTACTTGGAAAAGAAAACTGAGGCAAGGCAATGTTCTTAAGCTTAATGTGGTTTCTTTGCGTATGCAAATTTATATATGCATGGCTCCTTGCATGCCATTTAAGAAGGCCACCTATTCTCGGATGATGGGCTTTGCAAATGGCATACAGGGAGCCAGGCATACAATGCTACATACTTTTGCAATTGAGCCAAAAGAAGAAAGAAAGAGTGAAAAATGA 1350 40.89 MKFRGLLSNCCYSPSPTAMENSRHDRQDNESFRVYSYNELKSATNGFSGANKVGEGGFGIVYKGRLRDGRKIAVKVLSIEVESMRGEREFIAELTSLSNIRHENLVELKGCYVDGSNRYLVYDYMENNSLAHALQGVRENRMRLSWLARKEILIGVARGLAYLHEEVEPHIVHRDIKSSNILLDHNFTPKVADFGLAKLLRENHSHVSTRVAGTIGYLAPEYAVSGHLTRKSDVYSFGVLLLEIVSGRATVDFDLEHGEHHLVQKVWEHYKANELVKLIDPMLDIDFCEEEAVRFMKIGLLCVQENTTKRPRMSLALSMLMKETDVNDHNISQPGHIIDFMDIKMGKGNSSTSIFSKVSTGNSLLSPTKVRDESDDVLTWKRKLRQGNVLKLNVVSLRMQIYICMAPCMPFKKATYSRMMGFANGIQGARHTMLHTFAIEPKEERKSEK 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28454958 28457208 + CrPI670011_04g009860.1 Cre04g0986 495290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0986 449 SMART serkin_6 47 296 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g0986 449 CDD STKc_IRAK 53 322 - -
Cre04g0986 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g0986 449 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524(InterPro)
Cre04g0986 449 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 25 356 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cre04g0986 449 Gene3D Phosphorylase Kinase; domain 1 17 124 - -
Cre04g0986 449 ProSiteProfiles Protein kinase domain profile. 47 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g0986 449 FunFam Serine/threonine-protein kinase receptor 17 124 - -
Cre04g0986 449 Gene3D Transferase(Phosphotransferase) domain 1 125 335 - -
Cre04g0986 449 SUPERFAMILY Protein kinase-like (PK-like) 28 320 IPR011009 -
Cre04g0986 449 FunFam Putative LRR receptor-like serine/threonine-protein kinase 125 332 - -
Cre04g0986 449 Pfam Protein kinase domain 51 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0986 Cre-Chr4:28454958 Cre07g1434 Cre-Chr7:29393672 4.30E-101 dispersed
Cre04g0986 Cre-Chr4:28454958 Cre05g0950 Cre-Chr5:8750622 1.50E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64042 PF00069 Pkinase 1.30E-49 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0986 - - - 0.0